data_XPL
# 
_chem_comp.id                                    XPL 
_chem_comp.name                                  "N~6~-[(3R,5R)-5-amino-3-methyl-D-prolyl]-L-lysine" 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C12 H24 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               PYL 
_chem_comp.pdbx_synonyms                         "4-amino reduced pyrrolysine" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-07-30 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        272.344 
_chem_comp.one_letter_code                       O 
_chem_comp.three_letter_code                     XPL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1L2Q 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XPL C    C    C 0 1 N N N Y N Y 20.008 90.748 89.668 6.314  0.450  -0.033 C    XPL 1  
XPL N    N    N 0 1 N N N Y Y N 18.299 92.300 89.090 5.278  -1.737 0.177  N    XPL 2  
XPL O    O    O 0 1 N N N Y N Y 20.909 91.577 89.794 7.014  0.138  0.902  O    XPL 3  
XPL CA   CA   C 0 1 N N S Y N N 18.844 90.999 88.724 5.121  -0.394 -0.396 CA   XPL 4  
XPL CB   CB   C 0 1 N N N N N N 19.329 90.987 87.269 3.850  0.252  0.160  CB   XPL 5  
XPL CD   CD   C 0 1 N N N N N N 21.235 89.310 86.927 1.357  0.110  0.243  CD   XPL 6  
XPL CE   CE   C 0 1 N N N N N N 22.024 89.815 85.713 0.134  -0.678 -0.231 CE   XPL 7  
XPL CG   CG   C 0 1 N N N N N N 19.736 89.593 86.775 2.628  -0.536 -0.313 CG   XPL 8  
XPL NZ   NZ   N 0 1 N N N N N N 23.458 89.367 85.723 -1.082 -0.060 0.302  NZ   XPL 9  
XPL OXT  OXT  O 0 1 N Y N Y N Y 19.963 89.612 90.352 6.598  1.553  -0.744 OXT  XPL 10 
XPL C2   C2   C 0 1 N N N N N N 24.375 89.776 84.840 -2.288 -0.587 0.013  C2   XPL 11 
XPL N2   N2   N 0 1 N N N N N N 26.023 88.000 84.819 -4.658 -0.910 0.501  N2   XPL 12 
XPL O2   O2   O 0 1 N N N N N N 24.172 90.664 84.039 -2.367 -1.574 -0.687 O2   XPL 13 
XPL N3   N3   N 0 1 N N N N N N 28.327 87.302 84.930 -7.041 -0.684 0.144  N3   XPL 14 
XPL CA2  CA2  C 0 1 N N R N N N 25.797 89.376 85.285 -3.539 0.049  0.561  CA2  XPL 15 
XPL CB2  CB2  C 0 1 N N N N N N 26.257 90.827 87.302 -3.481 2.569  0.357  CB2  XPL 16 
XPL CD2  CD2  C 0 1 N N N N N N 27.564 88.867 86.670 -5.481 1.179  -0.346 CD2  XPL 17 
XPL CE2  CE2  C 0 1 N N R N N N 27.154 87.701 85.724 -5.708 -0.353 -0.378 CE2  XPL 18 
XPL CG2  CG2  C 0 1 N N R N N N 26.176 89.452 86.748 -3.932 1.265  -0.305 CG2  XPL 19 
XPL H    HN   H 0 1 N N N Y Y N 17.524 92.517 88.496 6.075  -2.210 -0.223 HN   XPL 20 
XPL H2   HNA  H 0 1 N Y N Y Y N 17.993 92.277 90.042 5.350  -1.695 1.183  HNA  XPL 21 
XPL HA   HA   H 0 1 N N N Y N N 18.085 90.214 88.861 5.045  -0.469 -1.481 HA   XPL 22 
XPL HB   HB   H 0 1 N N N N N N 18.517 91.361 86.628 3.887  0.246  1.250  HB   XPL 23 
XPL HBA  HBA  H 0 1 N N N N N N 20.199 91.654 87.186 3.780  1.280  -0.196 HBA  XPL 24 
XPL HD   HD   H 0 1 N N N N N N 21.386 88.225 87.026 1.287  1.138  -0.113 HD   XPL 25 
XPL HDA  HDA  H 0 1 N N N N N N 21.605 89.816 87.831 1.394  0.104  1.332  HDA  XPL 26 
XPL HE   HE   H 0 1 N N N N N N 21.544 89.436 84.799 0.098  -0.673 -1.320 HE   XPL 27 
XPL HEA  HEA  H 0 1 N N N N N N 21.999 90.915 85.711 0.205  -1.706 0.125  HEA  XPL 28 
XPL HG   HG   H 0 1 N N N N N N 19.178 88.841 87.353 2.591  -0.530 -1.403 HG   XPL 29 
XPL HGA  HGA  H 0 1 N N N N N N 19.471 89.508 85.711 2.698  -1.564 0.042  HGA  XPL 30 
XPL HNZ  HNZ  H 0 1 N N N N N N 23.744 88.724 86.433 -1.019 0.730  0.862  HNZ  XPL 31 
XPL HXT  HXT  H 0 0 N Y N Y N Y 20.716 89.559 90.928 7.372  2.065  -0.470 HXT  XPL 32 
XPL HN2  HN2  H 0 1 N N N N N N 25.235 87.406 84.979 -4.345 -1.809 0.167  HN2  XPL 33 
XPL HN3  HN3  H 0 1 N N N N N N 29.091 87.100 85.542 -7.179 -1.683 0.176  HN3  XPL 34 
XPL HN3A HN3A H 0 0 N N N N N N 28.105 86.488 84.394 -7.186 -0.270 1.053  HN3A XPL 35 
XPL HA2  HA2  H 0 1 N N N N N N 26.494 90.029 84.738 -3.375 0.363  1.592  HA2  XPL 36 
XPL HB2  HB2  H 0 1 N N N N N N 26.537 90.779 88.365 -2.398 2.558  0.478  HB2  XPL 37 
XPL HB2A HB2A H 0 0 N N N N N N 27.015 91.401 86.749 -3.768 3.413  -0.271 HB2A XPL 38 
XPL HB2B HB2B H 0 0 N N N N N N 25.279 91.320 87.203 -3.955 2.664  1.334  HB2B XPL 39 
XPL HD2  HD2  H 0 1 N N N N N N 27.941 88.520 87.644 -5.874 1.651  -1.246 HD2  XPL 40 
XPL HD2A HD2A H 0 0 N N N N N N 28.296 89.552 86.217 -5.920 1.620  0.548  HD2A XPL 41 
XPL HE2  HE2  H 0 1 N N N N N N 26.866 86.852 86.361 -5.594 -0.734 -1.393 HE2  XPL 42 
XPL HG2  HG2  H 0 1 N N N N N N 25.516 88.816 87.356 -3.514 1.175  -1.307 HG2  XPL 43 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XPL CA  C    SING N N 1  
XPL C   O    DOUB N N 2  
XPL C   OXT  SING N N 3  
XPL CA  N    SING N N 4  
XPL N   H    SING N N 5  
XPL N   H2   SING N N 6  
XPL CB  CA   SING N N 7  
XPL CA  HA   SING N N 8  
XPL CG  CB   SING N N 9  
XPL CB  HB   SING N N 10 
XPL CB  HBA  SING N N 11 
XPL CE  CD   SING N N 12 
XPL CG  CD   SING N N 13 
XPL CD  HD   SING N N 14 
XPL CD  HDA  SING N N 15 
XPL CE  NZ   SING N N 16 
XPL CE  HE   SING N N 17 
XPL CE  HEA  SING N N 18 
XPL CG  HG   SING N N 19 
XPL CG  HGA  SING N N 20 
XPL C2  NZ   SING N N 21 
XPL NZ  HNZ  SING N N 22 
XPL OXT HXT  SING N N 23 
XPL O2  C2   DOUB N N 24 
XPL C2  CA2  SING N N 25 
XPL N2  CA2  SING N N 26 
XPL N2  CE2  SING N N 27 
XPL N2  HN2  SING N N 28 
XPL N3  CE2  SING N N 29 
XPL N3  HN3  SING N N 30 
XPL N3  HN3A SING N N 31 
XPL CA2 CG2  SING N N 32 
XPL CA2 HA2  SING N N 33 
XPL CG2 CB2  SING N N 34 
XPL CB2 HB2  SING N N 35 
XPL CB2 HB2A SING N N 36 
XPL CB2 HB2B SING N N 37 
XPL CE2 CD2  SING N N 38 
XPL CD2 CG2  SING N N 39 
XPL CD2 HD2  SING N N 40 
XPL CD2 HD2A SING N N 41 
XPL CE2 HE2  SING N N 42 
XPL CG2 HG2  SING N N 43 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XPL SMILES           ACDLabs              12.01 "O=C(NCCCCC(C(=O)O)N)C1NC(N)CC1C"                                                                                                         
XPL InChI            InChI                1.03  "InChI=1S/C12H24N4O3/c1-7-6-9(14)16-10(7)11(17)15-5-3-2-4-8(13)12(18)19/h7-10,16H,2-6,13-14H2,1H3,(H,15,17)(H,18,19)/t7-,8+,9-,10-/m1/s1" 
XPL InChIKey         InChI                1.03  BUXWWMHLAXRADI-UTINFBMNSA-N                                                                                                               
XPL SMILES_CANONICAL CACTVS               3.385 "C[C@@H]1C[C@H](N)N[C@H]1C(=O)NCCCC[C@H](N)C(O)=O"                                                                                        
XPL SMILES           CACTVS               3.385 "C[CH]1C[CH](N)N[CH]1C(=O)NCCCC[CH](N)C(O)=O"                                                                                             
XPL SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H]1C[C@@H](N[C@H]1C(=O)NCCCC[C@@H](C(=O)O)N)N"                                                                                      
XPL SMILES           "OpenEye OEToolkits" 1.7.6 "CC1CC(NC1C(=O)NCCCCC(C(=O)O)N)N"                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XPL "SYSTEMATIC NAME" ACDLabs              12.01 "N~6~-[(3R,5R)-5-amino-3-methyl-D-prolyl]-L-lysine"                                          
XPL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-azanyl-6-[[(2R,3R,5R)-5-azanyl-3-methyl-pyrrolidin-2-yl]carbonylamino]hexanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XPL "Create component" 2014-07-30 RCSB 
XPL "Modify synonyms"  2020-06-05 PDBE 
XPL "Modify backbone"  2023-11-03 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      XPL 
_pdbx_chem_comp_synonyms.name         "4-amino reduced pyrrolysine" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
