data_1JM
# 
_chem_comp.id                                    1JM 
_chem_comp.name                                  4-carboxy-N-methyl-D-phenylalanine 
_chem_comp.type                                  "D-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C11 H13 N O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-02-15 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        223.225 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     1JM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4IPZ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
1JM CAA CAA C 0 1 N N N N N N 1.893  7.511 87.782 -2.348 2.146  1.312  CAA 1JM 1  
1JM N   N   N 0 1 N N N Y Y N 1.097  8.311 86.813 -2.095 1.427  0.056  N   1JM 2  
1JM CA  CA  C 0 1 N N R Y N N -0.232 7.911 86.253 -2.311 -0.016 0.223  CA  1JM 3  
1JM C   C   C 0 1 N N N Y N Y -0.323 6.360 86.128 -3.772 -0.331 0.032  C   1JM 4  
1JM OXT O   O 0 1 N Y N Y N Y -0.575 5.758 87.208 -4.206 -1.596 0.139  O   1JM 5  
1JM CB  CB  C 0 1 N N N N N N -1.417 8.489 87.075 -1.485 -0.779 -0.816 CB  1JM 6  
1JM CG  CG  C 0 1 Y N N N N N -2.660 7.952 86.699 -0.018 -0.562 -0.549 CG  1JM 7  
1JM CD1 CD1 C 0 1 Y N N N N N -3.512 7.457 87.689 0.664  -1.426 0.290  CD1 1JM 8  
1JM CE1 CE1 C 0 1 Y N N N N N -4.750 6.920 87.351 2.007  -1.233 0.539  CE1 1JM 9  
1JM CZ  CZ  C 0 1 Y N N N N N -5.149 6.872 86.019 2.678  -0.163 -0.057 CZ  1JM 10 
1JM CAL CAL C 0 1 N N N N N N -6.388 6.340 85.679 4.116  0.049  0.205  CAL 1JM 11 
1JM OAB OAB O 0 1 N N N N N N -6.770 5.253 86.167 4.761  1.082  -0.373 OAB 1JM 12 
1JM OAD OAD O 0 1 N N N N N N -7.125 6.963 84.888 4.718  -0.707 0.940  OAD 1JM 13 
1JM CE2 CE2 C 0 1 Y N N N N N -4.307 7.369 85.026 1.984  0.704  -0.903 CE2 1JM 14 
1JM CD2 CD2 C 0 1 Y N N N N N -3.069 7.908 85.364 0.642  0.496  -1.147 CD2 1JM 15 
1JM H1  H1  H 0 1 N N N N N N 2.825  8.044 88.021 -3.380 1.981  1.623  H1  1JM 16 
1JM H4  H2  H 0 1 N N N N N N 1.309  7.364 88.703 -1.673 1.778  2.084  H2  1JM 17 
1JM H3  H3  H 0 1 N N N N N N 2.133  6.533 87.340 -2.181 3.212  1.160  H3  1JM 18 
1JM H   H4  H 0 1 N Y N Y Y N 1.693  8.438 86.020 -1.165 1.616  -0.287 H4  1JM 19 
1JM HA  H6  H 0 1 N N N Y N N -0.309 8.324 85.236 -2.002 -0.317 1.224  H6  1JM 20 
1JM H10 H10 H 0 1 N N N N N N -1.247 8.267 88.139 -1.713 -1.843 -0.751 H10 1JM 21 
1JM H11 H11 H 0 1 N N N N N N -1.447 9.579 86.928 -1.730 -0.415 -1.813 H11 1JM 22 
1JM H12 H12 H 0 1 N N N N N N -3.207 7.491 88.725 0.144  -2.252 0.751  H12 1JM 23 
1JM H13 H13 H 0 1 N N N N N N -5.402 6.540 88.123 2.539  -1.907 1.194  H13 1JM 24 
1JM H14 H14 H 0 1 N N N N N N -7.636 5.044 85.837 5.701  1.180  -0.171 H14 1JM 25 
1JM H15 H15 H 0 1 N N N N N N -4.616 7.336 83.992 2.497  1.531  -1.371 H15 1JM 26 
1JM H16 H16 H 0 1 N N N N N N -2.422 8.294 84.591 0.104  1.166  -1.801 H16 1JM 27 
1JM O   O1  O 0 1 N N N Y N Y ?      ?     ?      -4.553 0.557  -0.218 O1  1JM 28 
1JM HXT H5  H 0 1 N Y N Y N Y -0.888 4.882 87.017 -5.152 -1.749 0.008  H5  1JM 29 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
1JM OAD CAL DOUB N N 1  
1JM CE2 CD2 DOUB Y N 2  
1JM CE2 CZ  SING Y N 3  
1JM CD2 CG  SING Y N 4  
1JM CAL CZ  SING N N 5  
1JM CAL OAB SING N N 6  
1JM CZ  CE1 DOUB Y N 7  
1JM C   CA  SING N N 8  
1JM C   OXT SING N N 9  
1JM CA  N   SING N N 10 
1JM CA  CB  SING N N 11 
1JM CG  CB  SING N N 12 
1JM CG  CD1 DOUB Y N 13 
1JM N   CAA SING N N 14 
1JM CE1 CD1 SING Y N 15 
1JM CAA H1  SING N N 16 
1JM CAA H4  SING N N 17 
1JM CAA H3  SING N N 18 
1JM N   H   SING N N 19 
1JM CA  HA  SING N N 20 
1JM CB  H10 SING N N 21 
1JM CB  H11 SING N N 22 
1JM CD1 H12 SING N N 23 
1JM CE1 H13 SING N N 24 
1JM OAB H14 SING N N 25 
1JM CE2 H15 SING N N 26 
1JM CD2 H16 SING N N 27 
1JM C   O   DOUB N N 28 
1JM OXT HXT SING N N 29 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
1JM SMILES           ACDLabs              12.01 "O=C(O)C(NC)Cc1ccc(cc1)C(=O)O"                                                                                 
1JM InChI            InChI                1.03  "InChI=1S/C11H13NO4/c1-12-9(11(15)16)6-7-2-4-8(5-3-7)10(13)14/h2-5,9,12H,6H2,1H3,(H,13,14)(H,15,16)/t9-/m1/s1" 
1JM InChIKey         InChI                1.03  PYGJXCANQONKFD-SECBINFHSA-N                                                                                    
1JM SMILES_CANONICAL CACTVS               3.370 "CN[C@H](Cc1ccc(cc1)C(O)=O)C(O)=O"                                                                             
1JM SMILES           CACTVS               3.370 "CN[CH](Cc1ccc(cc1)C(O)=O)C(O)=O"                                                                              
1JM SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CN[C@H](Cc1ccc(cc1)C(=O)O)C(=O)O"                                                                             
1JM SMILES           "OpenEye OEToolkits" 1.7.6 "CNC(Cc1ccc(cc1)C(=O)O)C(=O)O"                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
1JM "SYSTEMATIC NAME" ACDLabs              12.01 4-carboxy-N-methyl-D-phenylalanine                                       
1JM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "4-[(2R)-2-(methylamino)-3-oxidanyl-3-oxidanylidene-propyl]benzoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
1JM "Create component" 2013-02-15 RCSB 
1JM "Initial release"  2013-11-06 RCSB 
1JM "Modify backbone"  2023-11-03 PDBE 
# 
