data_G5M
#

_chem_comp.id                                   G5M
_chem_comp.name                                 "(2S)-2-{[2-(L-cysteinylamino)-2-deoxy-alpha-D-glucopyranosyl]oxy}butanedioic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H22 N2 O10 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-05-08
_chem_comp.pdbx_modified_date                   2022-04-08
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       398.386
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    G5M
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6DCK
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
G5M  C7   C1   C  0  1  N  N  N  49.589  122.906  61.391   2.306   0.521  -0.747  C7   G5M   1  
G5M  C9   C2   C  0  1  N  N  S  54.290  121.855  62.034  -1.609  -1.971   0.107  C9   G5M   2  
G5M  C4   C3   C  0  1  N  N  S  51.311  118.682  60.200  -2.039   2.606   0.138  C4   G5M   3  
G5M  C6   C4   C  0  1  N  N  N  53.570  118.100  59.077  -4.200   1.792  -0.818  C6   G5M   4  
G5M  C1   C5   C  0  1  N  N  R  52.507  121.278  60.625  -0.860   0.132  -0.766  C1   G5M   5  
G5M  C3   C6   C  0  1  N  N  R  50.562  119.684  61.090  -0.666   2.171   0.660  C3   G5M   6  
G5M  C2   C7   C  0  1  N  N  R  50.994  121.092  60.666   0.030   1.325  -0.410  C2   G5M   7  
G5M  C5   C8   C  0  1  N  N  R  52.831  118.999  60.070  -2.850   1.363  -0.239  C5   G5M   8  
G5M  C10  C9   C  0  1  N  N  N  55.462  120.972  61.674  -2.986  -2.051   0.714  C10  G5M   9  
G5M  C11  C10  C  0  1  N  N  N  54.465  122.351  63.461  -0.723  -3.066   0.706  C11  G5M  10  
G5M  C12  C11  C  0  1  N  N  N  53.361  123.293  63.858   0.615  -3.064   0.013  C12  G5M  11  
G5M  C24  C12  C  0  1  N  N  N  49.516  123.517  63.838   4.466   1.212   0.255  C24  G5M  12  
G5M  C8   C13  C  0  1  N  N  R  49.381  124.001  62.418   3.625   0.023  -0.216  C8   G5M  13  
G5M  N2   N1   N  0  1  N  N  N  50.586  122.153  61.558   1.313   0.841   0.106  N2   G5M  14  
G5M  N25  N2   N  0  1  N  N  N  48.151  124.763  62.240   4.343  -0.693  -1.280  N25  G5M  15  
G5M  O1   O1   O  0  1  N  N  N  53.076  121.170  61.891  -1.039  -0.691   0.388  O1   G5M  16  
G5M  O13  O2   O  0  1  N  N  N  56.375  121.486  61.039  -3.376  -1.173   1.447  O13  G5M  17  
G5M  O14  O3   O  0  1  N  N  N  55.477  119.780  62.004  -3.780  -3.098   0.439  O14  G5M  18  
G5M  O15  O4   O  0  1  N  N  N  53.342  124.420  63.416   0.837  -2.269  -0.869  O15  G5M  19  
G5M  O16  O5   O  0  1  N  N  N  52.500  122.883  64.620   1.559  -3.946   0.375  O16  G5M  20  
G5M  O3   O6   O  0  1  N  N  N  49.173  119.497  60.948   0.124   3.326   0.948  O3   G5M  21  
G5M  O4   O7   O  0  1  N  N  N  51.082  117.340  60.601  -2.728   3.335   1.156  O4   G5M  22  
G5M  O5   O8   O  0  1  N  N  N  53.087  120.358  59.755  -2.132   0.606  -1.215  O5   G5M  23  
G5M  O6   O9   O  0  1  N  N  N  53.194  118.280  57.732  -5.002   0.635  -1.061  O6   G5M  24  
G5M  O7   O10  O  0  1  N  N  N  48.818  122.817  60.476   2.139   0.638  -1.943  O7   G5M  25  
G5M  S26  S1   S  0  1  N  N  N  48.085  122.720  64.567   6.054   0.613   0.895  S26  G5M  26  
G5M  H1   H1   H  0  1  N  N  N  54.302  122.729  61.366  -1.678  -2.109  -0.972  H1   G5M  27  
G5M  H2   H2   H  0  1  N  N  N  50.892  118.800  59.190  -1.911   3.239  -0.740  H2   G5M  28  
G5M  H3   H3   H  0  1  N  N  N  53.374  117.053  59.351  -4.709   2.444  -0.108  H3   G5M  29  
G5M  H4   H4   H  0  1  N  N  N  54.647  118.306  59.163  -4.041   2.327  -1.754  H4   G5M  30  
G5M  H5   H5   H  0  1  N  N  N  52.695  122.291  60.241  -0.389  -0.450  -1.558  H5   G5M  31  
G5M  H6   H6   H  0  1  N  N  N  50.866  119.522  62.135  -0.791   1.580   1.567  H6   G5M  32  
G5M  H7   H7   H  0  1  N  N  N  50.594  121.287  59.660   0.200   1.931  -1.300  H7   G5M  33  
G5M  H8   H8   H  0  1  N  N  N  53.270  118.796  61.058  -3.012   0.752   0.649  H8   G5M  34  
G5M  H9   H9   H  0  1  N  N  N  54.460  121.487  64.142  -0.581  -2.877   1.770  H9   G5M  35  
G5M  H10  H10  H  0  1  N  N  N  55.428  122.876  63.541  -1.202  -4.035   0.569  H10  G5M  36  
G5M  H11  H11  H  0  1  N  N  N  50.347  122.796  63.865   4.643   1.887  -0.582  H11  G5M  37  
G5M  H12  H12  H  0  1  N  N  N  49.765  124.387  64.463   3.934   1.743   1.044  H12  G5M  38  
G5M  H13  H13  H  0  1  N  N  N  50.207  124.711  62.265   3.448  -0.652   0.621  H13  G5M  39  
G5M  H14  H14  H  0  1  N  N  N  51.141  122.302  62.376   1.448   0.752   1.063  H14  G5M  40  
G5M  H15  H15  H  0  1  N  N  N  48.086  125.462  62.952   4.518  -0.088  -2.068  H15  G5M  41  
G5M  H16  H16  H  0  1  N  N  N  48.158  125.202  61.341   5.201  -1.092  -0.931  H16  G5M  42  
G5M  H18  H18  H  0  1  N  N  N  56.277  119.374  61.691  -4.655  -3.106   0.851  H18  G5M  43  
G5M  H19  H19  H  0  1  N  N  N  51.866  123.571  64.781   2.402  -3.907  -0.098  H19  G5M  44  
G5M  H20  H20  H  0  1  N  N  N  48.711  120.118  61.499  -0.262   3.911   1.615  H20  G5M  45  
G5M  H21  H21  H  0  1  N  N  N  50.147  117.185  60.669  -3.606   3.642   0.894  H21  G5M  46  
G5M  H22  H22  H  0  1  N  N  N  53.694  117.690  57.181  -5.874   0.831  -1.430  H22  G5M  47  
G5M  H23  H23  H  0  1  N  N  N  48.515  122.430  65.759   6.677   1.745   1.266  H23  G5M  48  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
G5M  O6   C6   SING  N  N   1  
G5M  C6   C5   SING  N  N   2  
G5M  O5   C5   SING  N  N   3  
G5M  O5   C1   SING  N  N   4  
G5M  C5   C4   SING  N  N   5  
G5M  C4   O4   SING  N  N   6  
G5M  C4   C3   SING  N  N   7  
G5M  O7   C7   DOUB  N  N   8  
G5M  C1   C2   SING  N  N   9  
G5M  C1   O1   SING  N  N  10  
G5M  C2   C3   SING  N  N  11  
G5M  C2   N2   SING  N  N  12  
G5M  O3   C3   SING  N  N  13  
G5M  O13  C10  DOUB  N  N  14  
G5M  C7   N2   SING  N  N  15  
G5M  C7   C8   SING  N  N  16  
G5M  C10  O14  SING  N  N  17  
G5M  C10  C9   SING  N  N  18  
G5M  O1   C9   SING  N  N  19  
G5M  C9   C11  SING  N  N  20  
G5M  N25  C8   SING  N  N  21  
G5M  C8   C24  SING  N  N  22  
G5M  O15  C12  DOUB  N  N  23  
G5M  C11  C12  SING  N  N  24  
G5M  C24  S26  SING  N  N  25  
G5M  C12  O16  SING  N  N  26  
G5M  C9   H1   SING  N  N  27  
G5M  C4   H2   SING  N  N  28  
G5M  C6   H3   SING  N  N  29  
G5M  C6   H4   SING  N  N  30  
G5M  C1   H5   SING  N  N  31  
G5M  C3   H6   SING  N  N  32  
G5M  C2   H7   SING  N  N  33  
G5M  C5   H8   SING  N  N  34  
G5M  C11  H9   SING  N  N  35  
G5M  C11  H10  SING  N  N  36  
G5M  C24  H11  SING  N  N  37  
G5M  C24  H12  SING  N  N  38  
G5M  C8   H13  SING  N  N  39  
G5M  N2   H14  SING  N  N  40  
G5M  N25  H15  SING  N  N  41  
G5M  N25  H16  SING  N  N  42  
G5M  O14  H18  SING  N  N  43  
G5M  O16  H19  SING  N  N  44  
G5M  O3   H20  SING  N  N  45  
G5M  O4   H21  SING  N  N  46  
G5M  O6   H22  SING  N  N  47  
G5M  S26  H23  SING  N  N  48  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
G5M  SMILES            ACDLabs               12.01  "C(NC1C(OC(CC(O)=O)C(O)=O)OC(C(O)C1O)CO)(C(CS)N)=O"  
G5M  InChI             InChI                 1.03   "InChI=1S/C13H22N2O10S/c14-4(3-26)11(21)15-8-10(20)9(19)6(2-16)25-13(8)24-5(12(22)23)1-7(17)18/h4-6,8-10,13,16,19-20,26H,1-3,14H2,(H,15,21)(H,17,18)(H,22,23)/t4-,5-,6+,8+,9+,10+,13-/m0/s1"  
G5M  InChIKey          InChI                 1.03   UHNHELGKNQMNGF-AOQKXWSCSA-N  
G5M  SMILES_CANONICAL  CACTVS                3.385  "N[C@@H](CS)C(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@@H]1O[C@@H](CC(O)=O)C(O)=O"  
G5M  SMILES            CACTVS                3.385  "N[CH](CS)C(=O)N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1O[CH](CC(O)=O)C(O)=O"  
G5M  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O[C@@H](CC(=O)O)C(=O)O)NC(=O)[C@H](CS)N)O)O)O"  
G5M  SMILES            "OpenEye OEToolkits"  2.0.6  "C(C1C(C(C(C(O1)OC(CC(=O)O)C(=O)O)NC(=O)C(CS)N)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
G5M  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2S)-2-{[2-(L-cysteinylamino)-2-deoxy-alpha-D-glucopyranosyl]oxy}butanedioic acid"  
G5M  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(2~{S})-2-[(2~{R},3~{R},4~{R},5~{S},6~{R})-3-[[(2~{R})-2-azanyl-3-sulfanyl-propanoyl]amino]-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxybutanedioic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
G5M  "Create component"  2018-05-08  RCSB  
G5M  "Initial release"   2022-04-13  RCSB  
##
