data_6DN
# 
_chem_comp.id                                    6DN 
_chem_comp.name                                  "(2~{S})-2-azanyl-6-(2-hydroxy-2-oxoethylamino)hexanoic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C8 H16 N2 O4" 
_chem_comp.mon_nstd_parent_comp_id               LYS 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-03-30 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        204.224 
_chem_comp.one_letter_code                       K 
_chem_comp.three_letter_code                     6DN 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   Y 
_chem_comp.pdbx_model_coordinates_db_code        5J2S 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6DN O1  O1  O 0 1 N N N N N N -10.512 -29.428 1.755 ? ? ? O1  6DN 1  
6DN O2  O2  O 0 1 N N N N N N -10.053 -28.142 0.042 ? ? ? O2  6DN 2  
6DN CB  C1  C 0 1 N N N N N N -14.629 -22.921 3.880 ? ? ? CB  6DN 3  
6DN CA  C2  C 0 1 N N S Y N N -14.600 -21.516 4.479 ? ? ? CA  6DN 4  
6DN C   C3  C 0 1 N N N Y N Y -15.961 -21.150 4.994 ? ? ? C   6DN 5  
6DN O   O3  O 0 1 N N N Y N Y -16.270 -21.443 6.167 ? ? ? O   6DN 6  
6DN N   N1  N 0 1 N N N Y Y N -13.796 -21.460 5.695 ? ? ? N   6DN 7  
6DN CG  C4  C 0 1 N N N N N N -13.376 -23.371 3.088 ? ? ? CG  6DN 8  
6DN CD  C5  C 0 1 N N N N N N -13.515 -24.805 2.528 ? ? ? CD  6DN 9  
6DN CE  C6  C 0 1 N N N N N N -12.717 -25.047 1.250 ? ? ? CE  6DN 10 
6DN NZ  N2  N 0 1 N N N N N N -12.268 -26.425 0.964 ? ? ? NZ  6DN 11 
6DN CX1 C7  C 0 1 N N N N N N -11.308 -27.155 1.790 ? ? ? CX1 6DN 12 
6DN CX2 C8  C 0 1 N N N N N N -10.577 -28.318 1.148 ? ? ? CX2 6DN 13 
6DN OXT O4  O 0 1 N Y N Y N Y -16.741 -20.454 4.166 ? ? ? O3  6DN 14 
6DN H1  H1  H 0 1 N N N N N N -10.019 -30.048 1.231 ? ? ? H1  6DN 15 
6DN HB2 H2  H 0 1 N N N N N N -15.490 -22.974 3.198 ? ? ? H2  6DN 16 
6DN HB3 H3  H 0 1 N N N N N N -14.773 -23.632 4.707 ? ? ? H3  6DN 17 
6DN HA  H4  H 0 1 N N N Y N N -14.254 -20.786 3.732 ? ? ? H4  6DN 18 
6DN H   H5  H 0 1 N N N Y Y N -13.801 -20.527 6.056 ? ? ? H5  6DN 19 
6DN H2  H6  H 0 1 N Y N Y Y N -14.179 -22.083 6.377 ? ? ? H6  6DN 20 
6DN HG2 H8  H 0 1 N N N N N N -12.504 -23.336 3.758 ? ? ? H8  6DN 21 
6DN HG3 H9  H 0 1 N N N N N N -13.221 -22.678 2.248 ? ? ? H9  6DN 22 
6DN HD2 H10 H 0 1 N N N N N N -14.578 -24.992 2.314 ? ? ? H10 6DN 23 
6DN HD3 H11 H 0 1 N N N N N N -13.165 -25.512 3.295 ? ? ? H11 6DN 24 
6DN HE2 H12 H 0 1 N N N N N N -11.819 -24.414 1.300 ? ? ? H12 6DN 25 
6DN HE3 H13 H 0 1 N N N N N N -13.345 -24.726 0.406 ? ? ? H13 6DN 26 
6DN HZ1 H14 H 0 1 N N N N N N -13.097 -26.984 0.952 ? ? ? H14 6DN 27 
6DN H16 H16 H 0 1 N N N N N N -10.549 -26.434 2.128 ? ? ? H16 6DN 28 
6DN H17 H17 H 0 1 N N N N N N -11.854 -27.548 2.660 ? ? ? H17 6DN 29 
6DN HXT H18 H 0 1 N Y N Y N Y -17.550 -20.226 4.609 ? ? ? H18 6DN 30 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6DN O2  CX2 DOUB N N 1  
6DN NZ  CE  SING N N 2  
6DN NZ  CX1 SING N N 3  
6DN CX2 O1  SING N N 4  
6DN CX2 CX1 SING N N 5  
6DN CE  CD  SING N N 6  
6DN CD  CG  SING N N 7  
6DN CG  CB  SING N N 8  
6DN CB  CA  SING N N 9  
6DN CA  C   SING N N 10 
6DN CA  N   SING N N 11 
6DN C   O   DOUB N N 12 
6DN C   OXT SING N N 13 
6DN O1  H1  SING N N 14 
6DN CB  HB2 SING N N 15 
6DN CB  HB3 SING N N 16 
6DN CA  HA  SING N N 17 
6DN N   H   SING N N 18 
6DN N   H2  SING N N 19 
6DN CG  HG2 SING N N 20 
6DN CG  HG3 SING N N 21 
6DN CD  HD2 SING N N 22 
6DN CD  HD3 SING N N 23 
6DN CE  HE2 SING N N 24 
6DN CE  HE3 SING N N 25 
6DN NZ  HZ1 SING N N 26 
6DN CX1 H16 SING N N 27 
6DN CX1 H17 SING N N 28 
6DN OXT HXT SING N N 29 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6DN InChI            InChI                1.03  "InChI=1S/C8H16N2O4/c9-6(8(13)14)3-1-2-4-10-5-7(11)12/h6,10H,1-5,9H2,(H,11,12)(H,13,14)/t6-/m0/s1" 
6DN InChIKey         InChI                1.03  NUXSIDPKKIEIMI-LURJTMIESA-N                                                                        
6DN SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CCCCNCC(O)=O)C(O)=O"                                                                      
6DN SMILES           CACTVS               3.385 "N[CH](CCCCNCC(O)=O)C(O)=O"                                                                        
6DN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "C(CCNCC(=O)O)C[C@@H](C(=O)O)N"                                                                    
6DN SMILES           "OpenEye OEToolkits" 2.0.5 "C(CCNCC(=O)O)CC(C(=O)O)N"                                                                         
# 
_pdbx_chem_comp_identifier.comp_id           6DN 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.5 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-azanyl-6-(2-hydroxy-2-oxoethylamino)hexanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6DN "Create component"      2016-03-30 EBI  
6DN "Modify parent residue" 2016-03-30 EBI  
6DN "Initial release"       2017-10-11 RCSB 
6DN "Other modification"    2019-04-16 EBI  
6DN "Modify backbone"       2023-11-03 PDBE 
# 
