data_K1N
#

_chem_comp.id                                   K1N
_chem_comp.name                                 "(3~{S},7~{R},10~{R},13~{S})-4-[(3~{S},6~{R},8~{a}~{S})-1'-[(2~{S})-2-acetamido-3-(2-chlorophenyl)propanoyl]-5-oxidanylidene-spiro[1,2,3,8~{a}-tetrahydroindolizine-6,2'-pyrrolidine]-3-yl]carbonyl-2-oxidanylidene-1,4-diazatricyclo[8.3.0.0^{3,7}]tridec-8-ene-13-carboxylic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C35 H40 Cl N5 O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-04-16
_chem_comp.pdbx_modified_date                   2020-05-08
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       678.174
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    K1N
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6RD2
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
K1N  CAM  C1   C   0  1  N  N  N  23.833  22.719  25.268  -5.904   3.744  -0.950  CAM   K1N   1  
K1N  CAS  C2   C   0  1  N  N  N  26.907  24.584  19.319  -1.102  -1.502   2.817  CAS   K1N   2  
K1N  CAU  C3   C   0  1  N  N  N  27.592  26.459  20.597  -0.509   0.257   1.165  CAU   K1N   3  
K1N  CAK  C4   C   0  1  N  N  N  23.635  23.550  24.002  -5.130   2.472  -0.718  CAK   K1N   4  
K1N  CAQ  C5   C   0  1  N  N  N  24.758  24.512  20.276  -3.263  -1.725   1.791  CAQ   K1N   5  
K1N  CAR  C6   C   0  1  N  N  N  25.790  23.667  19.499  -1.950  -2.518   2.007  CAR   K1N   6  
K1N  CAT  C7   C   0  1  N  N  R  27.073  25.138  20.713  -1.516  -0.146   2.210  CAT   K1N   7  
K1N  N    N1   N   0  1  N  N  N  23.964  24.824  24.100  -5.624   1.522   0.100  N     K1N   8  
K1N  CA   C8   C   0  1  N  N  S  23.908  25.635  22.881  -4.872   0.285   0.326  CA    K1N   9  
K1N  C    C9   C   0  1  N  N  N  25.381  25.717  22.383  -3.528   0.616   0.923  C     K1N  10  
K1N  O    O1   O   0  1  N  N  N  26.274  26.219  23.070  -3.074   1.735   0.810  O     K1N  11  
K1N  CB   C10  C   0  1  N  N  N  23.419  27.065  23.066  -4.673  -0.441  -1.006  CB    K1N  12  
K1N  CG   C11  C   0  1  Y  N  N  22.003  27.181  23.401  -6.011  -0.880  -1.543  CG    K1N  13  
K1N  CD1  C12  C   0  1  Y  N  N  20.939  27.022  22.528  -6.616  -2.021  -1.045  CD1   K1N  14  
K1N  CD2  C13  C   0  1  Y  N  N  21.670  27.538  24.675  -6.636  -0.141  -2.529  CD2   K1N  15  
K1N  CE1  C14  C   0  1  Y  N  N  19.598  27.187  22.862  -7.844  -2.424  -1.539  CE1   K1N  16  
K1N  CE2  C15  C   0  1  Y  N  N  20.339  27.615  25.070  -7.864  -0.544  -3.022  CE2   K1N  17  
K1N  CZ   C16  C   0  1  Y  N  N  19.301  27.519  24.172  -8.466  -1.687  -2.529  CZ    K1N  18  
K1N  CAX  C17  C   0  1  N  N  N  27.900  24.290  21.543  -1.608   0.883   3.298  CAX   K1N  19  
K1N  CAY  C18  C   0  1  N  N  N  29.266  24.563  21.658  -0.639   1.702   3.591  CAY   K1N  20  
K1N  CAZ  C19  C   0  1  N  N  S  29.865  25.625  20.959   0.663   1.673   2.845  CAZ   K1N  21  
K1N  CBA  C20  C   0  1  N  N  N  30.869  26.428  21.802   1.212   3.105   2.652  CBA   K1N  22  
K1N  CBB  C21  C   0  1  N  N  N  31.064  27.523  20.793   2.117   2.909   1.403  CBB   K1N  23  
K1N  CBC  C22  C   0  1  N  N  S  29.612  27.958  20.499   1.314   1.895   0.556  CBC   K1N  24  
K1N  CBD  C23  C   0  1  N  N  N  29.506  28.461  19.165   2.253   0.916  -0.101  CBD   K1N  25  
K1N  CBG  C24  C   0  1  N  N  S  29.720  30.380  17.627   4.238   0.557  -1.586  CBG   K1N  26  
K1N  CBH  C25  C   0  1  N  N  N  30.453  29.749  16.588   4.701  -0.614  -0.847  CBH   K1N  27  
K1N  CBK  C26  C   0  1  N  N  S  30.907  29.478  14.159   6.378  -2.224  -0.001  CBK   K1N  28  
K1N  CBL  C27  C   0  1  N  N  N  32.208  30.061  13.930   6.335  -1.582   1.362  CBL   K1N  29  
K1N  CBN  C28  C   0  1  N  N  N  29.877  29.812  13.077   7.831  -2.546  -0.377  CBN   K1N  30  
K1N  CBO  C29  C   0  1  N  N  N  29.532  31.260  13.433   8.122  -1.689  -1.625  CBO   K1N  31  
K1N  CBP  C30  C   0  1  N  N  R  29.281  31.115  14.908   6.712  -1.362  -2.183  CBP   K1N  32  
K1N  CBQ  C31  C   0  1  N  N  N  29.451  32.381  15.538   6.818  -0.137  -3.008  CBQ   K1N  33  
K1N  CBR  C32  C   0  1  N  N  N  29.893  32.679  16.837   6.304   1.013  -2.919  CBR   K1N  34  
K1N  CBS  C33  C   0  1  N  N  R  30.312  31.773  17.830   5.335   1.549  -1.956  CBS   K1N  35  
K1N  CBT  C34  C   0  1  N  N  N  29.780  32.093  19.222   4.515   2.753  -2.462  CBT   K1N  36  
K1N  CBU  C35  C   0  1  N  N  N  30.263  30.829  19.887   3.278   2.725  -1.528  CBU   K1N  37  
K1N  NAP  N2   N   0  1  N  N  N  25.667  25.178  21.210  -2.832  -0.331   1.581  NAP   K1N  38  
K1N  NAW  N3   N   0  1  N  N  N  28.901  26.694  20.651   0.415   1.186   1.473  NAW   K1N  39  
K1N  NBF  N4   N   0  1  N  N  N  29.829  29.733  18.958   3.170   1.353  -0.987  NBF   K1N  40  
K1N  NBJ  N5   N   0  1  N  N  N  30.233  30.048  15.324   5.841  -1.287  -1.012  NBJ   K1N  41  
K1N  OAL  O2   O   0  1  N  N  N  23.086  23.063  23.007  -4.062   2.303  -1.267  OAL   K1N  42  
K1N  OAV  O3   O   0  1  N  N  N  26.876  27.407  20.389  -0.530  -0.248   0.063  OAV   K1N  43  
K1N  OBE  O4   O   0  1  N  N  N  29.091  27.748  18.250   2.184  -0.265   0.168  OBE   K1N  44  
K1N  OBI  O5   O   0  1  N  N  N  31.365  28.925  16.775   3.961  -1.024   0.022  OBI   K1N  45  
K1N  OBM  O6   O   0  1  N  N  N  32.472  31.235  14.178   5.904  -0.461   1.489  OBM   K1N  46  
K1N  CL1  CL1  CL  0  0  N  N  N  21.270  26.636  20.886  -5.834  -2.947   0.198  CLAA  K1N  47  
K1N  HAM  H1   H   0  1  N  N  N  23.425  21.709  25.112  -6.830   3.715  -0.377  HAM   K1N  48  
K1N  HZL  H2   H   0  1  N  N  N  24.907  22.649  25.496  -5.305   4.597  -0.630  HZL   K1N  49  
K1N  HZM  H3   H   0  1  N  N  N  23.310  23.200  26.108  -6.135   3.840  -2.010  HZM   K1N  50  
K1N  HAS  H4   H   0  1  N  N  N  27.812  24.054  18.987  -1.356  -1.545   3.876  HAS   K1N  51  
K1N  HZP  H5   H   0  1  N  N  N  26.662  25.378  18.598  -0.037  -1.683   2.667  HZP   K1N  52  
K1N  HZN  H6   H   0  1  N  N  N  24.237  25.229  19.624  -3.790  -2.096   0.912  HZN   K1N  53  
K1N  HAQ  H7   H   0  1  N  N  N  24.019  23.885  20.796  -3.901  -1.797   2.672  HAQ   K1N  54  
K1N  HZO  H8   H   0  1  N  N  N  25.385  23.345  18.529  -1.474  -2.753   1.055  HZO   K1N  55  
K1N  HAR  H9   H   0  1  N  N  N  26.095  22.784  20.081  -2.132  -3.424   2.586  HAR   K1N  56  
K1N  H    H10  H   0  1  N  N  N  24.242  25.222  24.975  -6.478   1.657   0.540  H     K1N  57  
K1N  HA   H11  H   0  1  N  N  N  23.297  25.133  22.116  -5.425  -0.357   1.011  HA    K1N  58  
K1N  HB2  H12  H   0  1  N  N  N  24.003  27.526  23.876  -4.199   0.232  -1.720  HB2   K1N  59  
K1N  HB1  H13  H   0  1  N  N  N  23.597  27.613  22.129  -4.039  -1.314  -0.853  HB1   K1N  60  
K1N  HD2  H14  H   0  1  N  N  N  22.451  27.764  25.386  -6.167   0.752  -2.915  HD2   K1N  61  
K1N  HE1  H15  H   0  1  N  N  N  18.818  27.061  22.126  -8.316  -3.314  -1.151  HE1   K1N  62  
K1N  HE2  H16  H   0  1  N  N  N  20.112  27.755  26.117  -8.352   0.034  -3.792  HE2   K1N  63  
K1N  HZ   H17  H   0  1  N  N  N  18.282  27.698  24.481  -9.425  -2.001  -2.914  HZ    K1N  64  
K1N  HAX  H18  H   0  1  N  N  N  27.466  23.453  22.069  -2.524   0.948   3.866  HAX   K1N  65  
K1N  HAY  H19  H   0  1  N  N  N  29.875  23.943  22.299  -0.775   2.417   4.389  HAY   K1N  66  
K1N  HAZ  H20  H   0  1  N  N  N  30.356  25.274  20.039   1.390   1.046   3.361  HAZ   K1N  67  
K1N  HZQ  H21  H   0  1  N  N  N  31.794  25.870  22.010   0.407   3.810   2.446  HZQ   K1N  68  
K1N  HBA  H22  H   0  1  N  N  N  30.439  26.790  22.747   1.797   3.421   3.516  HBA   K1N  69  
K1N  HZR  H23  H   0  1  N  N  N  31.559  27.146  19.886   2.242   3.848   0.865  HZR   K1N  70  
K1N  HBB  H24  H   0  1  N  N  N  31.652  28.353  21.213   3.085   2.497   1.688  HBB   K1N  71  
K1N  HBC  H25  H   0  1  N  N  N  29.280  28.697  21.243   0.733   2.421  -0.201  HBC   K1N  72  
K1N  HBG  H26  H   0  1  N  N  N  28.660  30.477  17.349   3.843   0.179  -2.529  HBG   K1N  73  
K1N  HBK  H27  H   0  1  N  N  N  30.986  28.386  14.261   5.787  -3.139   0.004  HBK   K1N  74  
K1N  HZS  H29  H   0  1  N  N  N  28.995  29.159  13.145   8.503  -2.272   0.436  HZS   K1N  75  
K1N  HBN  H30  H   0  1  N  N  N  30.312  29.737  12.069   7.935  -3.606  -0.613  HBN   K1N  76  
K1N  HBO  H31  H   0  1  N  N  N  30.370  31.942  13.227   8.646  -0.775  -1.347  HBO   K1N  77  
K1N  HZT  H32  H   0  1  N  N  N  28.636  31.609  12.899   8.700  -2.257  -2.353  HZT   K1N  78  
K1N  HBP  H33  H   0  1  N  N  N  28.252  30.756  15.059   6.383  -2.182  -2.821  HBP   K1N  79  
K1N  HBQ  H34  H   0  1  N  N  N  29.204  33.237  14.927   7.470  -0.250  -3.861  HBQ   K1N  80  
K1N  HBR  H35  H   0  1  N  N  N  29.914  33.725  17.106   6.630   1.714  -3.673  HBR   K1N  81  
K1N  HBS  H36  H   0  1  N  N  N  31.409  31.702  17.865   5.861   1.849  -1.050  HBS   K1N  82  
K1N  HBT  H37  H   0  1  N  N  N  30.236  32.997  19.651   5.073   3.681  -2.339  HBT   K1N  83  
K1N  HZU  H38  H   0  1  N  N  N  28.684  32.190  19.244   4.220   2.611  -3.501  HZU   K1N  84  
K1N  HBU  H39  H   0  1  N  N  N  29.799  30.708  20.877   3.413   3.435  -0.713  HBU   K1N  85  
K1N  HZV  H40  H   0  1  N  N  N  31.358  30.839  19.994   2.381   2.974  -2.094  HZV   K1N  86  
K1N  O1   O7   O   0  1  N  Y  N  33.083  29.260  13.352   6.777  -2.257   2.435  O1    K1N  87  
K1N  H1   H41  H   0  1  N  N  N  33.887  29.737  13.183   6.730  -1.804   3.288  H1    K1N  88  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
K1N  CBN  CBO  SING  N  N   1  
K1N  CBN  CBK  SING  N  N   2  
K1N  CBO  CBP  SING  N  N   3  
K1N  CBL  CBK  SING  N  N   4  
K1N  CBL  OBM  DOUB  N  N   5  
K1N  CBK  NBJ  SING  N  N   6  
K1N  CBP  NBJ  SING  N  N   7  
K1N  CBP  CBQ  SING  N  N   8  
K1N  NBJ  CBH  SING  N  N   9  
K1N  CBQ  CBR  DOUB  N  N  10  
K1N  CBH  OBI  DOUB  N  N  11  
K1N  CBH  CBG  SING  N  N  12  
K1N  CBR  CBS  SING  N  N  13  
K1N  CBG  CBS  SING  N  N  14  
K1N  CBG  NBF  SING  N  N  15  
K1N  CBS  CBT  SING  N  N  16  
K1N  OBE  CBD  DOUB  N  N  17  
K1N  NBF  CBD  SING  N  N  18  
K1N  NBF  CBU  SING  N  N  19  
K1N  CBD  CBC  SING  N  N  20  
K1N  CBT  CBU  SING  N  N  21  
K1N  CAS  CAR  SING  N  N  22  
K1N  CAS  CAT  SING  N  N  23  
K1N  CAR  CAQ  SING  N  N  24  
K1N  CAQ  NAP  SING  N  N  25  
K1N  OAV  CAU  DOUB  N  N  26  
K1N  CBC  NAW  SING  N  N  27  
K1N  CBC  CBB  SING  N  N  28  
K1N  CAU  NAW  SING  N  N  29  
K1N  CAU  CAT  SING  N  N  30  
K1N  NAW  CAZ  SING  N  N  31  
K1N  CAT  NAP  SING  N  N  32  
K1N  CAT  CAX  SING  N  N  33  
K1N  CBB  CBA  SING  N  N  34  
K1N  CL1  CD1  SING  N  N  35  
K1N  CAZ  CAY  SING  N  N  36  
K1N  CAZ  CBA  SING  N  N  37  
K1N  NAP  C    SING  N  N  38  
K1N  CAX  CAY  DOUB  N  N  39  
K1N  C    CA   SING  N  N  40  
K1N  C    O    DOUB  N  N  41  
K1N  CD1  CE1  DOUB  Y  N  42  
K1N  CD1  CG   SING  Y  N  43  
K1N  CE1  CZ   SING  Y  N  44  
K1N  CA   CB   SING  N  N  45  
K1N  CA   N    SING  N  N  46  
K1N  OAL  CAK  DOUB  N  N  47  
K1N  CB   CG   SING  N  N  48  
K1N  CG   CD2  DOUB  Y  N  49  
K1N  CAK  N    SING  N  N  50  
K1N  CAK  CAM  SING  N  N  51  
K1N  CZ   CE2  DOUB  Y  N  52  
K1N  CD2  CE2  SING  Y  N  53  
K1N  CAM  HAM  SING  N  N  54  
K1N  CAM  HZL  SING  N  N  55  
K1N  CAM  HZM  SING  N  N  56  
K1N  CAS  HAS  SING  N  N  57  
K1N  CAS  HZP  SING  N  N  58  
K1N  CAQ  HZN  SING  N  N  59  
K1N  CAQ  HAQ  SING  N  N  60  
K1N  CAR  HZO  SING  N  N  61  
K1N  CAR  HAR  SING  N  N  62  
K1N  N    H    SING  N  N  63  
K1N  CA   HA   SING  N  N  64  
K1N  CB   HB2  SING  N  N  65  
K1N  CB   HB1  SING  N  N  66  
K1N  CD2  HD2  SING  N  N  67  
K1N  CE1  HE1  SING  N  N  68  
K1N  CE2  HE2  SING  N  N  69  
K1N  CZ   HZ   SING  N  N  70  
K1N  CAX  HAX  SING  N  N  71  
K1N  CAY  HAY  SING  N  N  72  
K1N  CAZ  HAZ  SING  N  N  73  
K1N  CBA  HZQ  SING  N  N  74  
K1N  CBA  HBA  SING  N  N  75  
K1N  CBB  HZR  SING  N  N  76  
K1N  CBB  HBB  SING  N  N  77  
K1N  CBC  HBC  SING  N  N  78  
K1N  CBG  HBG  SING  N  N  79  
K1N  CBK  HBK  SING  N  N  80  
K1N  CBN  HZS  SING  N  N  81  
K1N  CBN  HBN  SING  N  N  82  
K1N  CBO  HBO  SING  N  N  83  
K1N  CBO  HZT  SING  N  N  84  
K1N  CBP  HBP  SING  N  N  85  
K1N  CBQ  HBQ  SING  N  N  86  
K1N  CBR  HBR  SING  N  N  87  
K1N  CBS  HBS  SING  N  N  88  
K1N  CBT  HBT  SING  N  N  89  
K1N  CBT  HZU  SING  N  N  90  
K1N  CBU  HBU  SING  N  N  91  
K1N  CBU  HZV  SING  N  N  92  
K1N  CBL  O1   SING  N  N  93  
K1N  O1   H1   SING  N  N  94  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
K1N  InChI             InChI                 1.03   "InChI=1S/C35H40ClN5O7/c1-20(42)37-26(19-22-5-2-3-6-25(22)36)30(43)39-17-4-15-35(39)16-13-24-9-11-27(41(24)34(35)48)31(44)38-18-14-21-7-8-23-10-12-28(33(46)47)40(23)32(45)29(21)38/h2-3,5-8,13,16,21,23-24,26-29H,4,9-12,14-15,17-19H2,1H3,(H,37,42)(H,46,47)/t21-,23-,24-,26-,27-,28-,29-,35+/m0/s1"  
K1N  InChIKey          InChI                 1.03   AYDUPBNKBXOHLZ-QHVDBZGRSA-N  
K1N  SMILES_CANONICAL  CACTVS                3.385  "CC(=O)N[C@@H](Cc1ccccc1Cl)C(=O)N2CCC[C@]23C=C[C@@H]4CC[C@H](N4C3=O)C(=O)N5CC[C@@H]6C=C[C@H]7CC[C@H](N7C(=O)[C@@H]56)C(O)=O"  
K1N  SMILES            CACTVS                3.385  "CC(=O)N[CH](Cc1ccccc1Cl)C(=O)N2CCC[C]23C=C[CH]4CC[CH](N4C3=O)C(=O)N5CC[CH]6C=C[CH]7CC[CH](N7C(=O)[CH]56)C(O)=O"  
K1N  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(=O)N[C@@H](Cc1ccccc1Cl)C(=O)N2CCC[C@]23C=C[C@@H]4CC[C@H](N4C3=O)C(=O)N5CC[C@H]6[C@H]5C(=O)N7[C@H](CC[C@H]7C(=O)O)C=C6"  
K1N  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(=O)NC(Cc1ccccc1Cl)C(=O)N2CCCC23C=CC4CCC(N4C3=O)C(=O)N5CCC6C5C(=O)N7C(CCC7C(=O)O)C=C6"  
#
_pdbx_chem_comp_identifier.comp_id          K1N
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(3~{S},7~{R},10~{R},13~{S})-4-[(3~{S},6~{R},8~{a}~{S})-1'-[(2~{S})-2-acetamido-3-(2-chlorophenyl)propanoyl]-5-oxidanylidene-spiro[1,2,3,8~{a}-tetrahydroindolizine-6,2'-pyrrolidine]-3-yl]carbonyl-2-oxidanylidene-1,4-diazatricyclo[8.3.0.0^{3,7}]tridec-8-ene-13-carboxylic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
K1N  "Create component"  2019-04-16  RCSB  
K1N  "Initial release"   2020-05-13  RCSB  
##
