data_PVN
#

_chem_comp.id                                   PVN
_chem_comp.name                                 PHYCOVIOLOBILIN
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C33 H40 N4 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "Phycoviolobilin, bound form"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2006-11-02
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       588.694
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    PVN
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2J96
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PVN  C31   C31   C  0  1  N  N  N  -24.875  15.221  -3.833  -5.821   2.758  -0.135  C31   PVN   1  
PVN  C32   C32   C  0  1  N  N  N  -24.306  14.331  -4.946  -6.085   1.568   0.789  C32   PVN   2  
PVN  C3    C3    C  0  1  N  N  N  -26.110  16.059  -4.362  -4.792   2.374  -1.167  C3    PVN   3  
PVN  C2    C2    C  0  1  N  N  N  -26.081  17.051  -5.300  -5.033   1.931  -2.397  C2    PVN   4  
PVN  C21   C21   C  0  1  N  N  N  -24.894  17.618  -6.084  -6.403   1.729  -2.992  C21   PVN   5  
PVN  C1    C1    C  0  1  N  N  N  -27.494  17.517  -5.444  -3.766   1.668  -3.088  C1    PVN   6  
PVN  O1    O1    O  0  1  N  N  N  -27.835  18.394  -6.196  -3.666   1.255  -4.227  O1    PVN   7  
PVN  N1    N1    N  0  1  N  N  N  -28.318  16.832  -4.629  -2.731   1.953  -2.275  N1    PVN   8  
PVN  C4    C4    C  0  1  N  N  R  -27.571  15.897  -3.896  -3.291   2.426  -1.002  C4    PVN   9  
PVN  C5    C5    C  0  1  N  N  N  -27.812  15.921  -2.400  -2.853   1.504   0.138  C5    PVN  10  
PVN  C6    C6    C  0  1  Y  N  N  -29.180  15.480  -1.920  -1.375   1.669   0.378  C6    PVN  11  
PVN  C7    C7    C  0  1  Y  N  N  -30.332  16.270  -1.856  -0.799   2.679   1.086  C7    PVN  12  
PVN  C41   C41   C  0  1  N  N  N  -30.502  17.696  -2.230  -1.525   3.815   1.760  C41   PVN  13  
PVN  N2    N2    N  0  1  Y  N  N  -29.481  14.215  -1.458  -0.414   0.837  -0.070  N2    PVN  14  
PVN  C9    C9    C  0  1  Y  N  N  -30.826  14.193  -1.103   0.814   1.314   0.348  C9    PVN  15  
PVN  C8    C8    C  0  1  Y  N  N  -31.366  15.464  -1.357   0.577   2.480   1.080  C8    PVN  16  
PVN  C51   C51   C  0  1  N  N  N  -32.776  16.001  -1.168   1.614   3.352   1.740  C51   PVN  17  
PVN  C52   C52   C  0  1  N  N  N  -32.981  16.702   0.183   1.857   2.864   3.169  C52   PVN  18  
PVN  C53   C53   C  0  1  N  N  N  -33.710  15.783   1.138   2.894   3.736   3.829  C53   PVN  19  
PVN  O54   O54   O  0  1  N  N  N  -34.682  15.095   0.708   3.268   3.493   5.095  O54   PVN  20  
PVN  O55   O55   O  0  1  N  N  N  -33.325  15.731   2.338   3.388   4.654   3.218  O55   PVN  21  
PVN  C10   C10   C  0  1  N  N  N  -31.554  13.075  -0.569   2.060   0.737   0.090  C10   PVN  22  
PVN  C11   C11   C  0  1  N  N  N  -31.147  11.720  -0.529   2.139  -0.596  -0.347  C11   PVN  23  
PVN  C12   C12   C  0  1  N  N  N  -31.970  10.640  -0.083   3.281  -1.219  -0.907  C12   PVN  24  
PVN  C61   C61   C  0  1  N  N  N  -33.389  10.746   0.434   4.626  -0.584  -1.145  C61   PVN  25  
PVN  C62   C62   C  0  1  N  N  N  -33.579  10.249   1.884   4.616   0.144  -2.491  C62   PVN  26  
PVN  C63   C63   C  0  1  N  N  N  -32.642  10.935   2.827   5.961   0.779  -2.729  C63   PVN  27  
PVN  O64   O64   O  0  1  N  N  N  -32.952  12.084   3.247   6.839   0.663  -1.906  O64   PVN  28  
PVN  O65   O65   O  0  1  N  N  N  -31.573  10.341   3.149   6.185   1.475  -3.855  O65   PVN  29  
PVN  N3    N3    N  0  1  N  N  N  -29.917  11.185  -0.922   1.149  -1.497  -0.299  N3    PVN  30  
PVN  C14   C14   C  0  1  N  N  N  -29.975   9.852  -0.745   1.578  -2.654  -0.795  C14   PVN  31  
PVN  C13   C13   C  0  1  N  N  N  -31.231   9.487  -0.227   2.929  -2.501  -1.188  C13   PVN  32  
PVN  C71   C71   C  0  1  N  N  N  -31.671   8.078   0.093   3.810  -3.560  -1.799  C71   PVN  33  
PVN  C15   C15   C  0  1  N  N  N  -28.917   8.933  -1.100   0.788  -3.877  -0.911  C15   PVN  34  
PVN  C16   C16   C  0  1  N  N  N  -28.563   8.516  -2.421  -0.049  -4.256   0.114  C16   PVN  35  
PVN  C17   C17   C  0  1  N  N  N  -29.381   8.562  -3.629  -0.981  -3.428   0.780  C17   PVN  36  
PVN  C81   C81   C  0  1  N  N  N  -30.773   9.061  -3.785  -1.240  -1.970   0.499  C81   PVN  37  
PVN  N4    N4    N  0  1  N  N  N  -27.308   7.963  -2.727  -0.137  -5.525   0.678  N4    PVN  38  
PVN  C19   C19   C  0  1  N  N  N  -27.346   7.677  -4.065  -1.069  -5.492   1.650  C19   PVN  39  
PVN  O19   O19   O  0  1  N  N  N  -26.411   7.175  -4.688  -1.400  -6.434   2.350  O19   PVN  40  
PVN  C18   C18   C  0  1  N  N  N  -28.593   8.029  -4.656  -1.601  -4.188   1.720  C18   PVN  41  
PVN  C91   C91   C  0  1  N  N  N  -28.984   7.853  -6.128  -2.673  -3.720   2.671  C91   PVN  42  
PVN  C92   C92   C  0  1  N  N  N  -29.121   6.370  -6.503  -4.049  -4.015   2.072  C92   PVN  43  
PVN  H321  H321  H  0  0  N  N  N  -25.084  13.636  -5.293  -5.159   1.283   1.288  H321  PVN  44  
PVN  H322  H322  H  0  0  N  N  N  -23.975  14.960  -5.785  -6.829   1.846   1.536  H322  PVN  45  
PVN  HC4   HC4   H  0  1  N  N  N  -27.880  14.897  -4.234  -2.969   3.448  -0.805  HC4   PVN  46  
PVN  H211  H211  H  0  0  N  N  N  -24.429  16.816  -6.676  -7.109   1.475  -2.201  H211  PVN  47  
PVN  H212  H212  H  0  0  N  N  N  -25.245  18.414  -6.757  -6.723   2.646  -3.486  H212  PVN  48  
PVN  H213  H213  H  0  0  N  N  N  -24.155  18.031  -5.382  -6.366   0.918  -3.720  H213  PVN  49  
PVN  HN1   HN1   H  0  1  N  N  N  -29.306  16.968  -4.557  -1.790   1.865  -2.492  HN1   PVN  50  
PVN  H5C1  H5C1  H  0  0  N  N  N  -27.655  16.953  -2.054  -3.400   1.764   1.045  H5C1  PVN  51  
PVN  H5C2  H5C2  H  0  0  N  N  N  -27.067  15.261  -1.932  -3.065   0.469  -0.130  H5C2  PVN  52  
PVN  HN2   HN2   H  0  1  N  N  N  -28.843  13.448  -1.390  -0.559   0.036  -0.597  HN2   PVN  53  
PVN  H411  H411  H  0  0  N  N  N  -30.791  17.766  -3.289  -1.778   3.530   2.781  H411  PVN  54  
PVN  H412  H412  H  0  0  N  N  N  -31.287  18.148  -1.605  -0.885   4.697   1.777  H412  PVN  55  
PVN  H413  H413  H  0  0  N  N  N  -29.554  18.232  -2.072  -2.439   4.039   1.209  H413  PVN  56  
PVN  H101  H101  H  0  0  N  N  N  -32.525  13.294  -0.149   2.962   1.315   0.225  H101  PVN  57  
PVN  H511  H511  H  0  0  N  N  N  -32.986  16.722  -1.971   2.545   3.300   1.175  H511  PVN  58  
PVN  H512  H512  H  0  0  N  N  N  -33.482  15.160  -1.236   1.260   4.383   1.763  H512  PVN  59  
PVN  H521  H521  H  0  0  N  N  N  -33.574  17.616   0.033   0.926   2.915   3.734  H521  PVN  60  
PVN  H522  H522  H  0  0  N  N  N  -32.002  16.967   0.608   2.211   1.833   3.146  H522  PVN  61  
PVN  H54   H54   H  0  1  N  N  N  -35.037  14.571   1.416   3.936   4.079   5.475  H54   PVN  62  
PVN  H611  H611  H  0  0  N  N  N  -33.693  11.802   0.390   4.837   0.130  -0.348  H611  PVN  63  
PVN  H612  H612  H  0  0  N  N  N  -34.040  10.149  -0.222   5.396  -1.355  -1.155  H612  PVN  64  
PVN  H621  H621  H  0  0  N  N  N  -34.614  10.451   2.198   4.405  -0.570  -3.288  H621  PVN  65  
PVN  H622  H622  H  0  0  N  N  N  -33.390   9.166   1.918   3.846   0.915  -2.481  H622  PVN  66  
PVN  H65   H65   H  0  1  N  N  N  -31.069  10.891   3.737   7.064   1.865  -3.963  H65   PVN  67  
PVN  H151  H151  H  0  0  N  N  N  -28.337   8.521  -0.287   0.861  -4.485  -1.801  H151  PVN  68  
PVN  H711  H711  H  0  0  N  N  N  -31.931   8.009   1.160   3.199  -4.253  -2.377  H711  PVN  69  
PVN  H712  H712  H  0  0  N  N  N  -32.550   7.821  -0.516   4.544  -3.089  -2.454  H712  PVN  70  
PVN  H713  H713  H  0  0  N  N  N  -30.853   7.378  -0.131   4.326  -4.104  -1.008  H713  PVN  71  
PVN  HN4   HN4   H  0  1  N  N  N  -26.546   7.810  -2.098   0.384  -6.300   0.417  HN4   PVN  72  
PVN  H811  H811  H  0  0  N  N  N  -31.088   8.950  -4.833  -0.619  -1.645  -0.336  H811  PVN  73  
PVN  H812  H812  H  0  0  N  N  N  -31.445   8.480  -3.137  -2.291  -1.830   0.246  H812  PVN  74  
PVN  H813  H813  H  0  0  N  N  N  -30.816  10.123  -3.500  -0.997  -1.381   1.383  H813  PVN  75  
PVN  H911  H911  H  0  0  N  N  N  -29.946   8.356  -6.304  -2.570  -4.244   3.621  H911  PVN  76  
PVN  H912  H912  H  0  0  N  N  N  -28.209   8.311  -6.760  -2.570  -2.647   2.834  H912  PVN  77  
PVN  H921  H921  H  0  0  N  N  N  -29.402   6.284  -7.563  -4.187  -5.093   1.990  H921  PVN  78  
PVN  H922  H922  H  0  0  N  N  N  -28.161   5.859  -6.335  -4.823  -3.598   2.717  H922  PVN  79  
PVN  H923  H923  H  0  0  N  N  N  -29.898   5.904  -5.879  -4.120  -3.563   1.082  H923  PVN  80  
PVN  H31   H31   H  0  1  N  N  N  -25.201  14.587  -2.995  -6.747   3.043  -0.634  H31   PVN  81  
PVN  H323  H323  H  0  0  N  N  N  -23.451  13.759  -4.557  -6.455   0.728   0.203  H323  PVN  82  
PVN  HXT   HXT   H  0  1  N  Y  N  -24.092  15.912  -3.487  -5.450   3.599   0.451  HXT   PVN  83  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PVN  C31  C32   SING  N  N   1  
PVN  C31  C3    SING  N  N   2  
PVN  C31  H31   SING  N  N   3  
PVN  C31  HXT   SING  N  N   4  
PVN  C32  H323  SING  N  N   5  
PVN  C32  H321  SING  N  N   6  
PVN  C32  H322  SING  N  N   7  
PVN  C3   C4    SING  N  N   8  
PVN  C3   C2    DOUB  N  N   9  
PVN  C2   C21   SING  N  N  10  
PVN  C2   C1    SING  N  N  11  
PVN  C21  H212  SING  N  N  12  
PVN  C21  H213  SING  N  N  13  
PVN  C21  H211  SING  N  N  14  
PVN  C1   O1    DOUB  N  N  15  
PVN  C1   N1    SING  N  N  16  
PVN  N1   C4    SING  N  N  17  
PVN  N1   HN1   SING  N  N  18  
PVN  C4   C5    SING  N  N  19  
PVN  C4   HC4   SING  N  N  20  
PVN  C5   C6    SING  N  N  21  
PVN  C5   H5C2  SING  N  N  22  
PVN  C5   H5C1  SING  N  N  23  
PVN  C6   C7    DOUB  Y  N  24  
PVN  C6   N2    SING  Y  N  25  
PVN  C7   C41   SING  N  N  26  
PVN  C7   C8    SING  Y  N  27  
PVN  C41  H411  SING  N  N  28  
PVN  C41  H412  SING  N  N  29  
PVN  C41  H413  SING  N  N  30  
PVN  N2   C9    SING  Y  N  31  
PVN  N2   HN2   SING  N  N  32  
PVN  C9   C8    DOUB  Y  N  33  
PVN  C9   C10   SING  N  N  34  
PVN  C8   C51   SING  N  N  35  
PVN  C51  C52   SING  N  N  36  
PVN  C51  H511  SING  N  N  37  
PVN  C51  H512  SING  N  N  38  
PVN  C52  C53   SING  N  N  39  
PVN  C52  H522  SING  N  N  40  
PVN  C52  H521  SING  N  N  41  
PVN  C53  O54   SING  N  N  42  
PVN  C53  O55   DOUB  N  N  43  
PVN  O54  H54   SING  N  N  44  
PVN  C10  C11   DOUB  N  Z  45  
PVN  C10  H101  SING  N  N  46  
PVN  C11  C12   SING  N  N  47  
PVN  C11  N3    SING  N  N  48  
PVN  C12  C61   SING  N  N  49  
PVN  C12  C13   DOUB  N  N  50  
PVN  C61  H611  SING  N  N  51  
PVN  C61  H612  SING  N  N  52  
PVN  C61  C62   SING  N  N  53  
PVN  C62  H621  SING  N  N  54  
PVN  C62  H622  SING  N  N  55  
PVN  C62  C63   SING  N  N  56  
PVN  C63  O65   SING  N  N  57  
PVN  C63  O64   DOUB  N  N  58  
PVN  O65  H65   SING  N  N  59  
PVN  N3   C14   DOUB  N  N  60  
PVN  C14  C13   SING  N  N  61  
PVN  C14  C15   SING  N  N  62  
PVN  C13  C71   SING  N  N  63  
PVN  C71  H713  SING  N  N  64  
PVN  C71  H711  SING  N  N  65  
PVN  C71  H712  SING  N  N  66  
PVN  C15  H151  SING  N  N  67  
PVN  C15  C16   DOUB  N  E  68  
PVN  C16  C17   SING  N  N  69  
PVN  C16  N4    SING  N  N  70  
PVN  C17  C81   SING  N  N  71  
PVN  C17  C18   DOUB  N  N  72  
PVN  C81  H811  SING  N  N  73  
PVN  C81  H812  SING  N  N  74  
PVN  C81  H813  SING  N  N  75  
PVN  N4   HN4   SING  N  N  76  
PVN  N4   C19   SING  N  N  77  
PVN  C19  O19   DOUB  N  N  78  
PVN  C19  C18   SING  N  N  79  
PVN  C18  C91   SING  N  N  80  
PVN  C91  H911  SING  N  N  81  
PVN  C91  H912  SING  N  N  82  
PVN  C91  C92   SING  N  N  83  
PVN  C92  H921  SING  N  N  84  
PVN  C92  H922  SING  N  N  85  
PVN  C92  H923  SING  N  N  86  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PVN  InChI             InChI                 1.03   "InChI=1S/C33H40N4O7/c1-7-20-15(2)25(36-33(20)44)12-23-16(3)21(8-10-29(39)40)26(34-23)14-27-22(9-11-30(41)42)17(4)24(35-27)13-28-31(19(6)38)18(5)32(43)37-28/h12,14,19,28,35,38H,7-11,13H2,1-6H3,(H,36,44)(H,37,43)(H,39,40)(H,41,42)/b25-12+,26-14-/t19?,28-/m1/s1"  
PVN  InChIKey          InChI                 1.03   SYEAKBPGLNVPDH-HVONXEAXSA-N  
PVN  SMILES_CANONICAL  CACTVS                3.370  "CCC1=C(C)C(=O)N[C@@H]1Cc2[nH]c(\C=C\3N=C(\C=C/4NC(=O)C(=C/4C)CC)C(=C\3CCC(O)=O)C)c(CCC(O)=O)c2C"  
PVN  SMILES            CACTVS                3.370  "CCC1=C(C)C(=O)N[CH]1Cc2[nH]c(C=C3N=C(C=C4NC(=O)C(=C4C)CC)C(=C3CCC(O)=O)C)c(CCC(O)=O)c2C"  
PVN  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "CCC1=C(C(=O)N[C@@H]1Cc2c(c(c([nH]2)/C=C\3/C(=C(C(=N3)/C=C/4\C(=C(C(=O)N4)CC)C)C)CCC(=O)O)CCC(=O)O)C)C"  
PVN  SMILES            "OpenEye OEToolkits"  1.7.6  "CCC1=C(C(=O)NC1Cc2c(c(c([nH]2)C=C3C(=C(C(=N3)C=C4C(=C(C(=O)N4)CC)C)C)CCC(=O)O)CCC(=O)O)C)C"  
#
_pdbx_chem_comp_identifier.comp_id          PVN
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  1.7.6
_pdbx_chem_comp_identifier.identifier       "3-[5-[[(2R)-3-ethyl-4-methyl-5-oxidanylidene-1,2-dihydropyrrol-2-yl]methyl]-2-[(Z)-[5-[(E)-(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-pyrrol-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PVN  "Create component"    2006-11-02  RCSB  
PVN  "Modify descriptor"   2011-06-04  RCSB  
PVN  "Modify synonyms"     2012-07-17  EBI   
PVN  "Modify value order"  2012-07-17  EBI   
PVN  "Modify synonyms"     2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     PVN
_pdbx_chem_comp_synonyms.name        "Phycoviolobilin, bound form"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
