data_A5O
# 
_chem_comp.id                                    A5O 
_chem_comp.name                                  
;ADENINE ARABINOSE-5'-PHOSPHATE
;
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C10 H14 N5 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               A 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-10-09 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        347.221 
_chem_comp.one_letter_code                       A 
_chem_comp.three_letter_code                     A5O 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2KP3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A5O P      P      P 0 1 N N N -10.340 0.146  -4.477 -4.853 -0.946 0.169  P      A5O 1  
A5O N1     N1     N 0 1 Y N N -1.456  3.813  -3.408 5.801  -0.366 0.763  N1     A5O 2  
A5O C2     C2     C 0 1 Y N N -2.380  4.590  -2.864 5.141  0.604  1.370  C2     A5O 3  
A5O N3     N3     N 0 1 Y N N -3.696  4.483  -2.965 3.846  0.783  1.214  N3     A5O 4  
A5O C4     C4     C 0 1 Y N N -4.055  3.437  -3.757 3.141  -0.023 0.425  C4     A5O 5  
A5O C5     C5     C 0 1 Y N N -3.231  2.549  -4.391 3.798  -1.070 -0.243 C5     A5O 6  
A5O C6     C6     C 0 1 Y N N -1.854  2.785  -4.162 5.181  -1.219 -0.044 C6     A5O 7  
A5O N6     N6     N 0 1 N N N -0.859  2.054  -4.632 5.881  -2.233 -0.675 N6     A5O 8  
A5O N7     N7     N 0 1 Y N N -3.975  1.606  -5.111 2.863  -1.728 -0.969 N7     A5O 9  
A5O C8     C8     C 0 1 Y N N -5.210  1.968  -4.868 1.703  -1.165 -0.794 C8     A5O 10 
A5O N9     N9     N 0 1 Y N N -5.336  3.052  -4.042 1.822  -0.108 0.058  N9     A5O 11 
A5O "C1'"  "C1'"  C 0 1 N N R -6.548  3.675  -3.474 0.740  0.775  0.501  "C1'"  A5O 12 
A5O "C2'"  "C2'"  C 0 1 N N S -7.505  4.272  -4.489 0.655  2.020  -0.409 "C2'"  A5O 13 
A5O "O2'"  "O2'"  O 0 1 N N N -7.595  3.529  -5.695 1.214  1.740  -1.694 "O2'"  A5O 14 
A5O "C3'"  "C3'"  C 0 1 N N S -8.832  4.283  -3.716 -0.861 2.295  -0.527 "C3'"  A5O 15 
A5O "O3'"  "O3'"  O 0 1 N N N -9.150  5.514  -3.081 -1.178 3.584  0.003  "O3'"  A5O 16 
A5O "C4'"  "C4'"  C 0 1 N N R -8.631  3.202  -2.648 -1.512 1.184  0.327  "C4'"  A5O 17 
A5O "O4'"  "O4'"  O 0 1 N N N -7.295  2.738  -2.726 -0.537 0.118  0.353  "O4'"  A5O 18 
A5O "C5'"  "C5'"  C 0 1 N N N -9.583  2.025  -2.833 -2.812 0.706  -0.323 "C5'"  A5O 19 
A5O "O5'"  "O5'"  O 0 1 N N N -9.436  1.421  -4.112 -3.456 -0.235 0.537  "O5'"  A5O 20 
A5O OP1    OP1    O 0 1 N N N -11.752 0.484  -4.206 -5.346 -1.839 1.415  OP1    A5O 21 
A5O OP2    OP2    O 0 1 N N N -9.924  -0.374 -5.795 -5.870 0.088  -0.129 OP2    A5O 22 
A5O OP3    OP3    O 0 1 N Y N -9.826  -0.854 -3.323 -4.653 -1.889 -1.120 OP3    A5O 23 
A5O H2     H2     H 0 1 N N N -2.016  5.411  -2.265 5.683  1.276  2.018  H2     A5O 24 
A5O H8     H8     H 0 1 N N N -6.062  1.452  -5.286 0.781  -1.488 -1.256 H8     A5O 25 
A5O HN6    HN6    H 0 1 N N N 0.011   2.433  -4.317 6.836  -2.326 -0.530 HN6    A5O 26 
A5O HN6A   HN6A   H 0 0 N N N -0.952  1.114  -4.303 5.418  -2.850 -1.262 HN6A   A5O 27 
A5O "H5'"  "H5'"  H 0 1 N N N -10.616 2.388  -2.732 -3.471 1.559  -0.488 "H5'"  A5O 28 
A5O "H1'"  "H1'"  H 0 1 N N N -6.148  4.492  -2.855 0.895  1.073  1.538  "H1'"  A5O 29 
A5O "H2'"  "H2'"  H 0 1 N N N -7.182  5.263  -4.840 1.162  2.866  0.053  "H2'"  A5O 30 
A5O "H3'"  "H3'"  H 0 1 N N N -9.669  4.116  -4.410 -1.183 2.220  -1.565 "H3'"  A5O 31 
A5O "H4'"  "H4'"  H 0 1 N N N -8.843  3.646  -1.664 -1.704 1.546  1.337  "H4'"  A5O 32 
A5O "H5'A" "H5'A" H 0 0 N N N -9.367  1.272  -2.061 -2.588 0.231  -1.278 "H5'A" A5O 33 
A5O "HO2'" "HO2'" H 0 0 N N N -8.207  3.954  -6.284 1.186  2.487  -2.307 "HO2'" A5O 34 
A5O "HO3'" "HO3'" H 0 0 N N N -9.982  5.432  -2.629 -0.747 4.316  -0.459 "HO3'" A5O 35 
A5O HOP1   HOP1   H 0 0 N N N -12.274 0.312  -4.981 -6.184 -2.297 1.264  HOP1   A5O 36 
A5O HOP3   HOP3   H 0 0 N Y N -9.357  -1.580 -3.718 -3.999 -2.591 -0.996 HOP3   A5O 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A5O OP2   P      DOUB N N 1  
A5O P     OP1    SING N N 2  
A5O P     "O5'"  SING N N 3  
A5O P     OP3    SING N N 4  
A5O C6    N1     DOUB Y N 5  
A5O N1    C2     SING Y N 6  
A5O N3    C2     DOUB Y N 7  
A5O C2    H2     SING N N 8  
A5O C4    N3     SING Y N 9  
A5O C5    C4     DOUB Y N 10 
A5O N9    C4     SING Y N 11 
A5O N7    C5     SING Y N 12 
A5O C5    C6     SING Y N 13 
A5O N6    C6     SING N N 14 
A5O HN6   N6     SING N N 15 
A5O N6    HN6A   SING N N 16 
A5O N7    C8     DOUB Y N 17 
A5O H8    C8     SING N N 18 
A5O C8    N9     SING Y N 19 
A5O N9    "C1'"  SING N N 20 
A5O "C2'" "C1'"  SING N N 21 
A5O "C1'" "H1'"  SING N N 22 
A5O "C1'" "O4'"  SING N N 23 
A5O "O2'" "C2'"  SING N N 24 
A5O "H2'" "C2'"  SING N N 25 
A5O "C2'" "C3'"  SING N N 26 
A5O "O2'" "HO2'" SING N N 27 
A5O "H3'" "C3'"  SING N N 28 
A5O "C3'" "O3'"  SING N N 29 
A5O "C3'" "C4'"  SING N N 30 
A5O "O3'" "HO3'" SING N N 31 
A5O "C5'" "C4'"  SING N N 32 
A5O "O4'" "C4'"  SING N N 33 
A5O "C4'" "H4'"  SING N N 34 
A5O "O5'" "C5'"  SING N N 35 
A5O "C5'" "H5'A" SING N N 36 
A5O "C5'" "H5'"  SING N N 37 
A5O OP1   HOP1   SING N N 38 
A5O OP3   HOP3   SING N N 39 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A5O SMILES           ACDLabs              11.02 "O=P(O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O"                                                                                                                       
A5O SMILES_CANONICAL CACTVS               3.352 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]3O"                                                                                                  
A5O SMILES           CACTVS               3.352 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O"                                                                                                         
A5O SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)N"                                                                                                
A5O SMILES           "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)O)N"                                                                                                                 
A5O InChI            InChI                1.03  "InChI=1S/C10H14N5O7P/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(22-10)1-21-23(18,19)20/h2-4,6-7,10,16-17H,1H2,(H2,11,12,13)(H2,18,19,20)/t4-,6-,7+,10-/m1/s1" 
A5O InChIKey         InChI                1.03  UDMBCSSLTHHNCD-UHTZMRCNSA-N                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A5O "SYSTEMATIC NAME" ACDLabs              11.02 "9-(5-O-phosphono-beta-D-arabinofuranosyl)-9H-purin-6-amine"                                 
A5O "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[(2R,3S,4S,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A5O "Create component"     2009-10-09 RCSB 
A5O "Modify aromatic_flag" 2011-06-04 RCSB 
A5O "Modify descriptor"    2011-06-04 RCSB 
# 
