data_GMO
# 
_chem_comp.id                                    GMO 
_chem_comp.name                                  "{(4Z)-2-[(1R,2R)-1-amino-2-hydroxypropyl]-4-[(4-nitrophenyl)methylidene]-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C15 H16 N4 O6" 
_chem_comp.mon_nstd_parent_comp_id               "THR, TYR, GLY" 
_chem_comp.pdbx_synonyms                         "PEPTIDE DERIVED CHROMOPHORE" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-10-13 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        348.311 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     GMO 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6B9C 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
GMO N1   N   N 0  1 N N N Y Y N 75.153 -1.955 12.450 -1.417 2.331  1.311  N   GMO 1  
GMO CA1  CA  C 0  1 N N R Y N N 73.764 -2.343 12.334 -2.302 1.748  0.294  CA  GMO 2  
GMO C3   C   C 0  1 N N N Y N Y 72.198 -0.755 9.571  -4.572 -1.070 0.917  C   GMO 3  
GMO O3   O   O 0  1 N N N Y N Y 72.399 0.204  8.563  -3.799 -1.332 1.808  O   GMO 4  
GMO CB1  CB1 C 0  1 N N R N N N 73.448 -3.636 13.101 -2.333 2.656  -0.937 CB1 GMO 5  
GMO CB2  CB2 C 0  1 N N N N N N 71.091 0.893  14.878 0.750  -1.943 -0.743 CB2 GMO 6  
GMO CG1  CG1 C 0  1 N N N N N N 74.312 -4.780 12.572 -2.735 4.071  -0.517 CG1 GMO 7  
GMO OG1  OG1 O 0  1 N N N N N N 73.689 -3.483 14.472 -1.036 2.688  -1.538 OG1 GMO 8  
GMO CG2  CG2 C 0  1 Y N N N N N 70.924 0.429  16.334 2.043  -1.329 -0.421 CG2 GMO 9  
GMO CD1  CD1 C 0  1 Y N N N N N 71.439 -0.773 16.803 2.108  0.018  -0.041 CD1 GMO 10 
GMO CD2  CD2 C 0  1 Y N N N N N 70.226 1.257  17.206 3.219  -2.087 -0.488 CD2 GMO 11 
GMO CE1  CE1 C 0  1 Y N N N N N 71.247 -1.132 18.133 3.327  0.586  0.259  CE1 GMO 12 
GMO CE2  CE2 C 0  1 Y N N N N N 70.038 0.906  18.536 4.429  -1.502 -0.185 CE2 GMO 13 
GMO CZ   CZ  C 0  1 Y N N N N N 70.549 -0.292 18.994 4.485  -0.169 0.185  CZ  GMO 14 
GMO C1   C1  C 0  1 N N N Y N N 72.920 -1.164 12.799 -1.788 0.387  -0.099 C1  GMO 15 
GMO C2   C2  C 0  1 N N N Y N N 71.942 0.733  12.654 -1.794 -1.728 -0.720 C2  GMO 16 
GMO CA2  CA2 C 0  1 N N N Y N N 71.765 0.257  13.926 -0.414 -1.235 -0.553 CA2 GMO 17 
GMO CA3  CA3 C 0  1 N N N Y N N 73.091 -0.056 10.607 -4.051 -0.671 -0.440 CA3 GMO 18 
GMO N2   N2  N 0  1 N N N Y N N 72.375 -0.916 14.006 -0.533 0.072  -0.169 N2  GMO 19 
GMO N3   N3  N 0  1 N N N Y N N 72.639 -0.151 11.982 -2.586 -0.675 -0.421 N3  GMO 20 
GMO NO   NO  N 1  1 N N N N N N 70.344 -0.682 20.377 5.789  0.451  0.509  NO  GMO 21 
GMO O2   O2  O 0  1 N N N Y N N 71.542 1.761  12.211 -2.145 -2.845 -1.056 O2  GMO 22 
GMO O40  O40 O 0  1 N N N N N N 69.875 0.069  21.159 6.810  -0.210 0.445  O40 GMO 23 
GMO ON1  ON1 O -1 1 N N N N N N 70.688 -1.986 20.751 5.842  1.622  0.840  ON1 GMO 24 
GMO H    H1  H 0  1 N N N Y Y N 75.737 -2.710 12.151 -1.429 1.783  2.158  H1  GMO 25 
GMO H2   H2  H 0  1 N Y N Y Y N 75.324 -1.154 11.876 -0.477 2.429  0.958  H2  GMO 26 
GMO HA1  H4  H 0  1 N N N Y N N 73.535 -2.522 11.273 -3.309 1.652  0.700  H4  GMO 27 
GMO H8   H8  H 0  1 N N N N N N 72.392 -3.890 12.928 -3.057 2.270  -1.655 H8  GMO 28 
GMO H9   H9  H 0  1 N N N N N N 70.616 1.823  14.603 0.712  -2.951 -1.128 H9  GMO 29 
GMO H11  H11 H 0  1 N N N N N N 74.080 -5.702 13.126 -2.011 4.456  0.201  H11 GMO 30 
GMO H12  H12 H 0  1 N N N N N N 74.104 -4.933 11.503 -2.757 4.718  -1.393 H12 GMO 31 
GMO H13  H13 H 0  1 N N N N N N 75.375 -4.529 12.706 -3.724 4.047  -0.058 H13 GMO 32 
GMO H14  H14 H 0  1 N N N N N N 73.486 -4.295 14.922 -0.341 3.021  -0.955 H14 GMO 33 
GMO H15  H15 H 0  1 N N N N N N 71.986 -1.425 16.138 1.205  0.608  0.017  H15 GMO 34 
GMO H16  H16 H 0  1 N N N N N N 69.823 2.190  16.842 3.177  -3.127 -0.776 H16 GMO 35 
GMO H17  H17 H 0  1 N N N N N N 71.642 -2.068 18.499 3.379  1.625  0.553  H17 GMO 36 
GMO H18  H18 H 0  1 N N N N N N 69.499 1.562  19.204 5.337  -2.085 -0.235 H18 GMO 37 
GMO HA31 H20 H 0  1 N N N Y N N 74.094 -0.503 10.548 -4.407 -1.379 -1.189 H20 GMO 38 
GMO HA32 H21 H 0  1 N N N Y N N 73.149 1.010  10.341 -4.409 0.329  -0.686 H21 GMO 39 
GMO OXT  O1  O 0  1 N Y N Y N Y 71.061 -1.414 9.570  -5.895 -1.136 1.135  O1  GMO 40 
GMO HXT  H5  H 0  1 N Y N Y N Y 70.524 -1.119 8.844  -6.181 -1.397 2.021  H5  GMO 41 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GMO O3  C3   DOUB N N 1  
GMO C3  CA3  SING N N 2  
GMO CA3 N3   SING N N 3  
GMO N3  C2   SING N N 4  
GMO N3  C1   SING N N 5  
GMO O2  C2   DOUB N N 6  
GMO CA1 N1   SING N N 7  
GMO CA1 C1   SING N N 8  
GMO CA1 CB1  SING N N 9  
GMO CG1 CB1  SING N N 10 
GMO C2  CA2  SING N N 11 
GMO C1  N2   DOUB N N 12 
GMO CB1 OG1  SING N N 13 
GMO CA2 N2   SING N N 14 
GMO CA2 CB2  DOUB N Z 15 
GMO CB2 CG2  SING N N 16 
GMO CG2 CD1  DOUB Y N 17 
GMO CG2 CD2  SING Y N 18 
GMO CD1 CE1  SING Y N 19 
GMO CD2 CE2  DOUB Y N 20 
GMO CE1 CZ   DOUB Y N 21 
GMO CE2 CZ   SING Y N 22 
GMO CZ  NO   SING N N 23 
GMO NO  ON1  SING N N 24 
GMO NO  O40  DOUB N N 25 
GMO N1  H    SING N N 26 
GMO N1  H2   SING N N 27 
GMO CA1 HA1  SING N N 28 
GMO CB1 H8   SING N N 29 
GMO CB2 H9   SING N N 30 
GMO CG1 H11  SING N N 31 
GMO CG1 H12  SING N N 32 
GMO CG1 H13  SING N N 33 
GMO OG1 H14  SING N N 34 
GMO CD1 H15  SING N N 35 
GMO CD2 H16  SING N N 36 
GMO CE1 H17  SING N N 37 
GMO CE2 H18  SING N N 38 
GMO CA3 HA31 SING N N 39 
GMO CA3 HA32 SING N N 40 
GMO C3  OXT  SING N N 41 
GMO OXT HXT  SING N N 42 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
GMO SMILES           ACDLabs              12.01 "NC(C2=NC(=[C@H]c1ccc(cc1)[N+]([O-])=O)C(N2CC(O)=O)=O)C(O)C"                                                                                          
GMO InChI            InChI                1.03  "InChI=1S/C15H16N4O6/c1-8(20)13(16)14-17-11(15(23)18(14)7-12(21)22)6-9-2-4-10(5-3-9)19(24)25/h2-6,8,13,20H,7,16H2,1H3,(H,21,22)/b11-6-/t8-,13+/m1/s1" 
GMO InChIKey         InChI                1.03  JQDXBTBETHQVKZ-NGDPAIJVSA-N                                                                                                                           
GMO SMILES_CANONICAL CACTVS               3.385 "C[C@@H](O)[C@H](N)C1=NC(=C\c2ccc(cc2)[N+]([O-])=O)/C(=O)N1CC(O)=O"                                                                                   
GMO SMILES           CACTVS               3.385 "C[CH](O)[CH](N)C1=NC(=Cc2ccc(cc2)[N+]([O-])=O)C(=O)N1CC(O)=O"                                                                                        
GMO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[C@H]([C@@H](C1=N/C(=C\c2ccc(cc2)[N+](=O)[O-])/C(=O)N1CC(=O)O)N)O"                                                                                  
GMO SMILES           "OpenEye OEToolkits" 2.0.6 "CC(C(C1=NC(=Cc2ccc(cc2)[N+](=O)[O-])C(=O)N1CC(=O)O)N)O"                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
GMO "SYSTEMATIC NAME" ACDLabs              12.01 "{(4Z)-2-[(1R,2R)-1-amino-2-hydroxypropyl]-4-[(4-nitrophenyl)methylidene]-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid"            
GMO "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "2-[(4~{Z})-2-[(1~{R},2~{R})-1-azanyl-2-oxidanyl-propyl]-4-[(4-nitrophenyl)methylidene]-5-oxidanylidene-imidazol-1-yl]ethanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
GMO "Create component" 2017-10-13 RCSB 
GMO "Initial release"  2018-10-17 RCSB 
GMO "Modify synonyms"  2021-03-01 PDBE 
GMO "Modify backbone"  2023-11-03 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      GMO 
_pdbx_chem_comp_synonyms.name         "PEPTIDE DERIVED CHROMOPHORE" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
