data_KEO
# 
_chem_comp.id                                    KEO 
_chem_comp.name                                  "e(R)-beta-lysyl-hydroxylysine" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C12 H26 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               LYS 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-10-05 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        290.359 
_chem_comp.one_letter_code                       K 
_chem_comp.three_letter_code                     KEO 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6ENU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KEO CA  CA  C 0 1 N N S Y N N 177.342 201.288 197.779 5.545   -0.123 -0.457 CA  KEO 1  
KEO N   N   N 0 1 N N N Y Y N 177.359 200.335 198.885 5.725   -1.520 -0.038 N   KEO 2  
KEO C   C   C 0 1 N N N Y N Y 177.114 200.666 196.404 6.760   0.679  -0.067 C   KEO 3  
KEO O   O   O 0 1 N N N Y N Y 177.365 201.291 195.435 7.504   0.269  0.792  O   KEO 4  
KEO CB  CB  C 0 1 N N N N N N 178.575 202.179 197.746 4.308   0.459  0.230  C01 KEO 5  
KEO CG  CG  C 0 1 N N S N N N 178.270 203.596 198.184 3.059   -0.275 -0.262 C02 KEO 6  
KEO CD  CD  C 0 1 N N N N N N 179.478 204.105 198.934 1.812   0.388  0.329  C03 KEO 7  
KEO CE  CE  C 0 1 N N N N N N 179.399 205.611 199.039 0.560   -0.266 -0.260 C04 KEO 8  
KEO C05 C05 C 0 1 N N N N N N 179.267 207.665 197.674 -1.859  -0.047 -0.070 C05 KEO 9  
KEO C06 C06 C 0 1 N N N N N N 179.417 208.484 198.947 -3.087  0.605  0.511  C06 KEO 10 
KEO C07 C07 C 0 1 N N S N N N 180.417 209.594 198.711 -4.339  -0.048 -0.077 C07 KEO 11 
KEO C08 C08 C 0 1 N N N N N N 179.652 210.898 198.574 -5.582  0.695  0.416  C08 KEO 12 
KEO C09 C09 C 0 1 N N N N N N 179.400 211.506 199.941 -6.824  0.122  -0.268 C09 KEO 13 
KEO C10 C10 C 0 1 N N N N N N 180.701 211.819 200.664 -8.067  0.865  0.225  C10 KEO 14 
KEO NZ  NZ  N 0 1 N N N N N N 179.259 206.221 197.740 -0.633  0.369  0.305  N01 KEO 15 
KEO N02 N02 N 0 1 N N N N N N 181.107 209.319 197.471 -4.406  -1.452 0.351  N02 KEO 16 
KEO N03 N03 N 0 1 N N N N N N 180.551 211.581 202.082 -9.260  0.314  -0.432 N03 KEO 17 
KEO O01 O01 O 0 1 N N N N N N 177.181 203.601 199.059 3.114   -1.641 0.154  O01 KEO 18 
KEO O02 O02 O 0 1 N N N N N N 179.169 208.216 196.634 -1.974  -0.947 -0.876 O02 KEO 19 
KEO OXT OXT O 0 1 N Y N Y N Y 176.624 199.435 196.363 7.015   1.849  -0.674 O1  KEO 20 
KEO HA  H1  H 0 1 N N N Y N N 176.488 201.959 197.953 5.414   -0.082 -1.538 H1  KEO 21 
KEO H2  H2  H 0 1 N Y N Y Y N 177.513 200.823 199.744 5.849   -1.585 0.961  H2  KEO 22 
KEO H   H3  H 0 1 N N N Y Y N 176.482 199.857 198.926 4.952   -2.092 -0.345 H3  KEO 23 
KEO H5  H5  H 0 1 N N N N N N 179.335 201.756 198.419 4.400   0.337  1.309  H5  KEO 24 
KEO H6  H6  H 0 1 N N N N N N 178.967 202.203 196.719 4.224   1.519  -0.010 H6  KEO 25 
KEO H7  H7  H 0 1 N N N N N N 178.084 204.227 197.303 3.014   -0.228 -1.350 H7  KEO 26 
KEO H8  H8  H 0 1 N N N N N N 179.497 203.666 199.943 1.812   0.263  1.411  H8  KEO 27 
KEO H9  H9  H 0 1 N N N N N N 180.393 203.821 198.394 1.816   1.450  0.085  H9  KEO 28 
KEO H10 H10 H 0 1 N N N N N N 180.318 205.986 199.513 0.560   -0.141 -1.343 H10 KEO 29 
KEO H11 H11 H 0 1 N N N N N N 178.531 205.882 199.657 0.557   -1.328 -0.016 H11 KEO 30 
KEO H12 H12 H 0 1 N N N N N N 178.444 208.918 199.222 -3.087  0.481  1.594  H12 KEO 31 
KEO H13 H13 H 0 1 N N N N N N 179.773 207.836 199.761 -3.083  1.668  0.268  H13 KEO 32 
KEO H14 H14 H 0 1 N N N N N N 181.122 209.655 199.553 -4.296  -0.002 -1.165 H14 KEO 33 
KEO H15 H15 H 0 1 N N N N N N 180.240 211.602 197.967 -5.673  0.573  1.496  H15 KEO 34 
KEO H16 H16 H 0 1 N N N N N N 178.689 210.703 198.080 -5.491  1.754  0.176  H16 KEO 35 
KEO H17 H17 H 0 1 N N N N N N 178.828 212.437 199.817 -6.733  0.243  -1.348 H17 KEO 36 
KEO H18 H18 H 0 1 N N N N N N 178.818 210.795 200.546 -6.915  -0.938 -0.028 H18 KEO 37 
KEO H19 H19 H 0 1 N N N N N N 181.501 211.175 200.270 -8.159  0.743  1.304  H19 KEO 38 
KEO H20 H20 H 0 1 N N N N N N 180.965 212.874 200.498 -7.977  1.924  -0.015 H20 KEO 39 
KEO H21 H21 H 0 1 N N N N N N 179.160 205.665 196.915 -0.541  1.088  0.949  H21 KEO 40 
KEO H22 H22 H 0 1 N N N N N N 181.613 208.461 197.554 -4.446  -1.522 1.357  H22 KEO 41 
KEO H23 H23 H 0 1 N N N N N N 180.441 209.242 196.729 -5.189  -1.923 -0.076 H23 KEO 42 
KEO H25 H25 H 0 1 N N N N N N 181.411 211.789 202.548 -9.331  -0.680 -0.278 H25 KEO 43 
KEO H26 H26 H 0 1 N N N N N N 179.826 212.167 202.443 -10.095 0.789  -0.123 H26 KEO 44 
KEO H28 H28 H 0 1 N N N N N N 176.996 204.493 199.329 3.155   -1.758 1.113  H28 KEO 45 
KEO HXT H29 H 0 1 N Y N Y N Y 176.519 199.166 195.458 7.806   2.327  -0.390 H29 KEO 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KEO O   C   DOUB N N 1  
KEO C   CA  SING N N 2  
KEO O02 C05 DOUB N N 3  
KEO N02 C07 SING N N 4  
KEO C05 NZ  SING N N 5  
KEO C05 C06 SING N N 6  
KEO NZ  CE  SING N N 7  
KEO CB  CA  SING N N 8  
KEO CB  CG  SING N N 9  
KEO CA  N   SING N N 10 
KEO CG  CD  SING N N 11 
KEO CG  O01 SING N N 12 
KEO C08 C07 SING N N 13 
KEO C08 C09 SING N N 14 
KEO C07 C06 SING N N 15 
KEO CD  CE  SING N N 16 
KEO C09 C10 SING N N 17 
KEO C10 N03 SING N N 18 
KEO C   OXT SING N N 19 
KEO CA  HA  SING N N 20 
KEO N   H2  SING N N 21 
KEO N   H   SING N N 22 
KEO CB  H5  SING N N 23 
KEO CB  H6  SING N N 24 
KEO CG  H7  SING N N 25 
KEO CD  H8  SING N N 26 
KEO CD  H9  SING N N 27 
KEO CE  H10 SING N N 28 
KEO CE  H11 SING N N 29 
KEO C06 H12 SING N N 30 
KEO C06 H13 SING N N 31 
KEO C07 H14 SING N N 32 
KEO C08 H15 SING N N 33 
KEO C08 H16 SING N N 34 
KEO C09 H17 SING N N 35 
KEO C09 H18 SING N N 36 
KEO C10 H19 SING N N 37 
KEO C10 H20 SING N N 38 
KEO NZ  H21 SING N N 39 
KEO N02 H22 SING N N 40 
KEO N02 H23 SING N N 41 
KEO N03 H25 SING N N 42 
KEO N03 H26 SING N N 43 
KEO O01 H28 SING N N 44 
KEO OXT HXT SING N N 45 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KEO InChI            InChI                1.03  "InChI=1S/C12H26N4O4/c13-4-1-2-8(14)6-11(18)16-5-3-9(17)7-10(15)12(19)20/h8-10,17H,1-7,13-15H2,(H,16,18)(H,19,20)/t8-,9-,10-/m0/s1" 
KEO InChIKey         InChI                1.03  PVEXBIJTZBFREJ-GUBZILKMSA-N                                                                                                         
KEO SMILES_CANONICAL CACTVS               3.385 "NCCC[C@H](N)CC(=O)NCC[C@H](O)C[C@H](N)C(O)=O"                                                                                      
KEO SMILES           CACTVS               3.385 "NCCC[CH](N)CC(=O)NCC[CH](O)C[CH](N)C(O)=O"                                                                                         
KEO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C(C[C@@H](CC(=O)NCC[C@@H](C[C@@H](C(=O)O)N)O)N)CN"                                                                                 
KEO SMILES           "OpenEye OEToolkits" 2.0.6 "C(CC(CC(=O)NCCC(CC(C(=O)O)N)O)N)CN"                                                                                                
# 
_pdbx_chem_comp_identifier.comp_id           KEO 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "(2~{S},4~{S})-2-azanyl-6-[[(3~{S})-3,6-bis(azanyl)hexanoyl]amino]-4-oxidanyl-hexanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KEO "Create component"   2017-10-05 EBI  
KEO "Other modification" 2017-10-05 EBI  
KEO "Other modification" 2017-10-06 EBI  
KEO "Initial release"    2017-11-22 RCSB 
KEO "Modify backbone"    2023-11-03 PDBE 
# 
