data_BDP
#

_chem_comp.id                                   BDP
_chem_comp.name                                 "beta-D-glucopyranuronic acid"
_chem_comp.type                                 "D-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C6 H10 O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "beta-D-glucuronic acid; D-glucuronic acid; glucuronic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2001-11-26
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       194.139
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    BDP
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1GQK
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  BDP  "beta-D-glucuronic acid"  PDB  ?  
2  BDP  "D-glucuronic acid"       PDB  ?  
3  BDP  "glucuronic acid"         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BDP  C1    C1   C  0  1  N  N  R   8.748  -11.725  3.342  -1.248   1.252   0.387  C1    BDP   1  
BDP  C2    C2   C  0  1  N  N  R   9.125  -11.206  4.727  -1.851  -0.001  -0.255  C2    BDP   2  
BDP  C3    C3   C  0  1  N  N  S   8.484  -11.996  5.851  -1.037  -1.226   0.173  C3    BDP   3  
BDP  C4    C4   C  0  1  N  N  S   6.984  -12.052  5.582   0.427  -1.017  -0.224  C4    BDP   4  
BDP  C5    C5   C  0  1  N  N  S   6.755  -12.709  4.238   0.942   0.275   0.417  C5    BDP   5  
BDP  C6    C6   C  0  1  N  N  N   5.298  -12.692  3.781   2.364   0.519  -0.016  C6    BDP   6  
BDP  O2    O2   O  0  1  N  N  N  10.540  -11.232  4.784  -3.205  -0.153   0.174  O2    BDP   7  
BDP  O3    O3   O  0  1  N  N  N   8.730  -11.292  7.057  -1.548  -2.390  -0.480  O3    BDP   8  
BDP  O4    O4   O  0  1  N  N  N   6.322  -12.815  6.554   1.209  -2.121   0.235  O4    BDP   9  
BDP  O5    O5   O  0  1  N  N  N   7.382  -11.957  3.235   0.123   1.370   0.002  O5    BDP  10  
BDP  O6A   O6A  O  0  1  N  N  N   4.562  -13.559  4.253   2.632   1.482  -0.695  O6A   BDP  11  
BDP  O1    O1   O  0  1  N  Y  N   8.947  -10.588  2.508  -1.968   2.406  -0.053  O1    BDP  12  
BDP  O6B   O6B  O  0  1  N  N  N   4.954  -11.847  2.932   3.334  -0.333   0.352  O6B   BDP  13  
BDP  H1    H1   H  0  1  N  N  N   9.311  -12.642  3.111  -1.316   1.173   1.472  H1    BDP  14  
BDP  H2    H2   H  0  1  N  N  N   8.743  -10.185  4.873  -1.820   0.096  -1.341  H2    BDP  15  
BDP  H3    H3   H  0  1  N  N  N   8.887  -13.017  5.921  -1.108  -1.351   1.253  H3    BDP  16  
BDP  H4    H4   H  0  1  N  N  N   6.591  -11.025  5.602   0.504  -0.941  -1.308  H4    BDP  17  
BDP  H5    H5   H  0  1  N  N  N   7.127  -13.736  4.371   0.903   0.183   1.503  H5    BDP  18  
BDP  HO2   HB   H  0  1  N  Y  N  10.829  -10.916  5.632  -3.778   0.591  -0.060  HO2   BDP  19  
BDP  HO3   HC   H  0  1  N  Y  N   8.340  -11.763  7.784  -2.474  -2.579  -0.279  HO3   BDP  20  
BDP  HO4   HD   H  0  1  N  Y  N   5.590  -13.271  6.155   2.149  -2.055   0.018  HO4   BDP  21  
BDP  HO1   HA   H  0  1  N  Y  N   8.735  -10.813  1.610  -1.640   3.237   0.315  HO1   BDP  22  
BDP  HO6B  H6B  H  0  0  N  N  N   4.040  -11.977  2.708   4.231  -0.135   0.050  HO6B  BDP  23  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BDP  C1   C2    SING  N  N   1  
BDP  C1   O5    SING  N  N   2  
BDP  C1   O1    SING  N  N   3  
BDP  C1   H1    SING  N  N   4  
BDP  C2   C3    SING  N  N   5  
BDP  C2   O2    SING  N  N   6  
BDP  C2   H2    SING  N  N   7  
BDP  C3   C4    SING  N  N   8  
BDP  C3   O3    SING  N  N   9  
BDP  C3   H3    SING  N  N  10  
BDP  C4   C5    SING  N  N  11  
BDP  C4   O4    SING  N  N  12  
BDP  C4   H4    SING  N  N  13  
BDP  C5   C6    SING  N  N  14  
BDP  C5   O5    SING  N  N  15  
BDP  C5   H5    SING  N  N  16  
BDP  C6   O6A   DOUB  N  N  17  
BDP  C6   O6B   SING  N  N  18  
BDP  O2   HO2   SING  N  N  19  
BDP  O3   HO3   SING  N  N  20  
BDP  O4   HO4   SING  N  N  21  
BDP  O1   HO1   SING  N  N  22  
BDP  O6B  HO6B  SING  N  N  23  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BDP  SMILES            ACDLabs               12.01  "O=C(O)C1OC(O)C(O)C(O)C1O"  
BDP  SMILES_CANONICAL  CACTVS                3.370  "O[C@@H]1O[C@@H]([C@@H](O)[C@H](O)[C@H]1O)C(O)=O"  
BDP  SMILES            CACTVS                3.370  "O[CH]1O[CH]([CH](O)[CH](O)[CH]1O)C(O)=O"  
BDP  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "[C@@H]1([C@@H]([C@H](O[C@H]([C@@H]1O)O)C(=O)O)O)O"  
BDP  SMILES            "OpenEye OEToolkits"  1.7.0  "C1(C(C(OC(C1O)O)C(=O)O)O)O"  
BDP  InChI             InChI                 1.03   "InChI=1S/C6H10O7/c7-1-2(8)4(5(10)11)13-6(12)3(1)9/h1-4,6-9,12H,(H,10,11)/t1-,2-,3+,4-,6+/m0/s1"  
BDP  InChIKey          InChI                 1.03   AEMOLEFTQBMNLQ-QIUUJYRFSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BDP  "SYSTEMATIC NAME"                      ACDLabs               12.01  "beta-D-glucopyranuronic acid"  
BDP  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  1.7.0  "(2S,3S,4S,5R,6R)-3,4,5,6-tetrahydroxyoxane-2-carboxylic acid"  
BDP  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    DGlcpAb  
BDP  "COMMON NAME"                          GMML                  1.0    "b-D-glucopyranuronic acid"  
BDP  "IUPAC CARBOHYDRATE SYMBOL"            PDB-CARE              1.0    b-D-GlcpA  
BDP  "SNFG CARBOHYDRATE SYMBOL"             GMML                  1.0    GlcA  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
BDP  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
BDP  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
BDP  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
BDP  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BDP  "Create component"          2001-11-26  EBI   
BDP  "Modify descriptor"         2011-06-04  RCSB  
BDP  "Other modification"        2019-08-12  RCSB  
BDP  "Other modification"        2019-12-19  RCSB  
BDP  "Other modification"        2020-07-03  RCSB  
BDP  "Modify name"               2020-07-17  RCSB  
BDP  "Modify synonyms"           2020-07-17  RCSB  
BDP  "Modify atom id"            2020-07-17  RCSB  
BDP  "Modify component atom id"  2020-07-17  RCSB  
##
