data_JDP
# 
_chem_comp.id                                    JDP 
_chem_comp.name                                  "1-[4-(benzylamino)-7,8-dihydro-5H-pyrano[4,3-d]pyrimidin-2-yl]-2-methyl-1H-indole-4-carboxamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H23 N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-09-04 
_chem_comp.pdbx_modified_date                    2019-01-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        413.472 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JDP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6MCK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JDP C22 C1  C 0 1 Y N N 66.818 28.498 62.914 -5.410 3.473  -1.192 C22 JDP 1  
JDP C21 C2  C 0 1 Y N N 66.341 29.795 63.111 -5.992 3.843  0.006  C21 JDP 2  
JDP O01 O1  O 0 1 N N N 68.481 27.968 54.787 6.473  0.579  -0.007 O01 JDP 3  
JDP C02 C3  C 0 1 N N N 67.791 28.572 55.595 5.858  1.628  0.005  C02 JDP 4  
JDP C03 C4  C 0 1 Y N N 67.996 28.418 57.062 4.384  1.618  0.007  C03 JDP 5  
JDP C04 C5  C 0 1 Y N N 67.117 28.988 57.971 3.672  2.816  0.015  C04 JDP 6  
JDP C05 C6  C 0 1 Y N N 67.275 28.835 59.354 2.289  2.803  0.017  C05 JDP 7  
JDP C06 C7  C 0 1 Y N N 68.302 28.119 59.905 1.592  1.612  0.011  C06 JDP 8  
JDP C07 C8  C 0 1 Y N N 69.155 27.560 59.007 2.274  0.401  0.003  C07 JDP 9  
JDP C08 C9  C 0 1 Y N N 69.041 27.666 57.603 3.680  0.398  -0.005 C08 JDP 10 
JDP C09 C10 C 0 1 Y N N 70.128 26.922 57.029 4.084  -1.006 -0.021 C09 JDP 11 
JDP C10 C11 C 0 1 Y N N 70.828 26.413 58.058 2.958  -1.741 -0.027 C10 JDP 12 
JDP C11 C12 C 0 1 N N N 72.064 25.567 57.933 2.907  -3.247 -0.042 C11 JDP 13 
JDP N12 N1  N 0 1 Y N N 70.227 26.790 59.295 1.864  -0.918 -0.004 N12 JDP 14 
JDP C13 C13 C 0 1 Y N N 70.571 26.485 60.572 0.540  -1.345 -0.005 C13 JDP 15 
JDP N14 N2  N 0 1 Y N N 70.467 27.477 61.430 -0.429 -0.443 -0.004 N14 JDP 16 
JDP C15 C14 C 0 1 Y N N 70.785 27.238 62.691 -1.703 -0.821 -0.002 C15 JDP 17 
JDP N16 N3  N 0 1 N N N 70.789 28.324 63.504 -2.716 0.124  -0.001 N16 JDP 18 
JDP C17 C15 C 0 1 N N N 70.102 28.593 64.738 -2.387 1.552  -0.000 C17 JDP 19 
JDP C18 C16 C 0 1 Y N N 68.792 29.041 64.194 -3.658 2.361  0.002  C18 JDP 20 
JDP C19 C17 C 0 1 Y N N 68.362 30.338 64.390 -4.240 2.731  1.200  C19 JDP 21 
JDP C20 C18 C 0 1 Y N N 67.123 30.699 63.849 -5.406 3.473  1.202  C20 JDP 22 
JDP C23 C19 C 0 1 Y N N 68.038 28.128 63.444 -4.244 2.731  -1.194 C23 JDP 23 
JDP C24 C20 C 0 1 Y N N 71.198 25.950 63.092 -2.005 -2.186 -0.004 C24 JDP 24 
JDP C25 C21 C 0 1 N N N 71.598 25.650 64.531 -3.443 -2.628 0.003  C25 JDP 25 
JDP O26 O2  O 0 1 N N N 72.612 24.632 64.574 -3.536 -4.005 -0.361 O26 JDP 26 
JDP C27 C22 C 0 1 N N N 72.331 23.427 63.769 -2.669 -4.851 0.405  C27 JDP 27 
JDP C28 C23 C 0 1 N N N 71.648 23.588 62.378 -1.224 -4.574 -0.014 C28 JDP 28 
JDP C29 C24 C 0 1 Y N N 71.235 24.994 62.096 -0.969 -3.090 -0.007 C29 JDP 29 
JDP N30 N4  N 0 1 Y N N 70.907 25.236 60.842 0.281  -2.643 -0.012 N30 JDP 30 
JDP N31 N5  N 0 1 N N N 66.759 29.369 55.193 6.524  2.800  0.016  N31 JDP 31 
JDP H1  H1  H 0 1 N N N 66.235 27.786 62.349 -5.870 3.758  -2.127 H1  JDP 32 
JDP H2  H2  H 0 1 N N N 65.388 30.098 62.703 -6.903 4.423  0.008  H2  JDP 33 
JDP H3  H3  H 0 1 N N N 66.285 29.568 57.601 4.202  3.757  0.020  H3  JDP 34 
JDP H4  H4  H 0 1 N N N 66.557 29.301 60.012 1.748  3.738  0.023  H4  JDP 35 
JDP H5  H5  H 0 1 N N N 68.425 28.007 60.972 0.512  1.620  0.013  H5  JDP 36 
JDP H6  H6  H 0 1 N N N 70.341 26.796 55.978 5.096  -1.383 -0.026 H6  JDP 37 
JDP H7  H7  H 0 1 N N N 72.953 26.215 57.927 2.897  -3.621 0.982  H7  JDP 38 
JDP H8  H8  H 0 1 N N N 72.122 24.874 58.785 2.005  -3.576 -0.558 H8  JDP 39 
JDP H9  H9  H 0 1 N N N 72.022 24.993 56.996 3.784  -3.635 -0.562 H9  JDP 40 
JDP H10 H10 H 0 1 N N N 71.754 28.440 63.740 -3.644 -0.160 0.000  H10 JDP 41 
JDP H11 H11 H 0 1 N N N 70.002 27.690 65.358 -1.803 1.789  0.889  H11 JDP 42 
JDP H12 H12 H 0 1 N N N 70.597 29.384 65.320 -1.805 1.791  -0.891 H12 JDP 43 
JDP H13 H13 H 0 1 N N N 68.960 31.049 64.941 -3.783 2.440  2.135  H13 JDP 44 
JDP H14 H14 H 0 1 N N N 66.757 31.703 64.004 -5.860 3.763  2.138  H14 JDP 45 
JDP H15 H15 H 0 1 N N N 68.414 27.129 63.280 -3.789 2.441  -2.130 H15 JDP 46 
JDP H16 H16 H 0 1 N N N 71.987 26.567 64.996 -3.858 -2.489 1.001  H16 JDP 47 
JDP H17 H17 H 0 1 N N N 70.714 25.303 65.087 -4.009 -2.027 -0.708 H17 JDP 48 
JDP H18 H18 H 0 1 N N N 71.679 22.780 64.375 -2.791 -4.634 1.466  H18 JDP 49 
JDP H19 H19 H 0 1 N N N 73.293 22.922 63.599 -2.915 -5.895 0.214  H19 JDP 50 
JDP H20 H20 H 0 1 N N N 70.755 22.947 62.349 -0.544 -5.062 0.685  H20 JDP 51 
JDP H21 H21 H 0 1 N N N 72.356 23.267 61.600 -1.055 -4.966 -1.017 H21 JDP 52 
JDP H22 H22 H 0 1 N N N 66.554 29.468 54.219 7.494  2.806  0.015  H22 JDP 53 
JDP H23 H23 H 0 1 N N N 66.208 29.854 55.872 6.033  3.636  0.026  H23 JDP 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JDP O01 C02 DOUB N N 1  
JDP N31 C02 SING N N 2  
JDP C02 C03 SING N N 3  
JDP C09 C08 SING Y N 4  
JDP C09 C10 DOUB Y N 5  
JDP C03 C08 DOUB Y N 6  
JDP C03 C04 SING Y N 7  
JDP C08 C07 SING Y N 8  
JDP C11 C10 SING N N 9  
JDP C04 C05 DOUB Y N 10 
JDP C10 N12 SING Y N 11 
JDP C07 N12 SING Y N 12 
JDP C07 C06 DOUB Y N 13 
JDP N12 C13 SING N N 14 
JDP C05 C06 SING Y N 15 
JDP C13 N30 DOUB Y N 16 
JDP C13 N14 SING Y N 17 
JDP N30 C29 SING Y N 18 
JDP N14 C15 DOUB Y N 19 
JDP C29 C28 SING N N 20 
JDP C29 C24 DOUB Y N 21 
JDP C28 C27 SING N N 22 
JDP C15 C24 SING Y N 23 
JDP C15 N16 SING N N 24 
JDP C22 C21 DOUB Y N 25 
JDP C22 C23 SING Y N 26 
JDP C24 C25 SING N N 27 
JDP C21 C20 SING Y N 28 
JDP C23 C18 DOUB Y N 29 
JDP N16 C17 SING N N 30 
JDP C27 O26 SING N N 31 
JDP C20 C19 DOUB Y N 32 
JDP C18 C19 SING Y N 33 
JDP C18 C17 SING N N 34 
JDP C25 O26 SING N N 35 
JDP C22 H1  SING N N 36 
JDP C21 H2  SING N N 37 
JDP C04 H3  SING N N 38 
JDP C05 H4  SING N N 39 
JDP C06 H5  SING N N 40 
JDP C09 H6  SING N N 41 
JDP C11 H7  SING N N 42 
JDP C11 H8  SING N N 43 
JDP C11 H9  SING N N 44 
JDP N16 H10 SING N N 45 
JDP C17 H11 SING N N 46 
JDP C17 H12 SING N N 47 
JDP C19 H13 SING N N 48 
JDP C20 H14 SING N N 49 
JDP C23 H15 SING N N 50 
JDP C25 H16 SING N N 51 
JDP C25 H17 SING N N 52 
JDP C27 H18 SING N N 53 
JDP C27 H19 SING N N 54 
JDP C28 H20 SING N N 55 
JDP C28 H21 SING N N 56 
JDP N31 H22 SING N N 57 
JDP N31 H23 SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JDP SMILES           ACDLabs              12.01 "c5cccc(CNc3nc(n2c1cccc(C(=O)N)c1cc2C)nc4c3COCC4)c5"                                                                                                                        
JDP InChI            InChI                1.03  "InChI=1S/C24H23N5O2/c1-15-12-18-17(22(25)30)8-5-9-21(18)29(15)24-27-20-10-11-31-14-19(20)23(28-24)26-13-16-6-3-2-4-7-16/h2-9,12H,10-11,13-14H2,1H3,(H2,25,30)(H,26,27,28)" 
JDP InChIKey         InChI                1.03  RDALZZCKQFLGJP-UHFFFAOYSA-N                                                                                                                                                 
JDP SMILES_CANONICAL CACTVS               3.385 "Cc1cc2c(cccc2C(N)=O)n1c3nc4CCOCc4c(NCc5ccccc5)n3"                                                                                                                          
JDP SMILES           CACTVS               3.385 "Cc1cc2c(cccc2C(N)=O)n1c3nc4CCOCc4c(NCc5ccccc5)n3"                                                                                                                          
JDP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1cc2c(cccc2n1c3nc4c(c(n3)NCc5ccccc5)COCC4)C(=O)N"                                                                                                                        
JDP SMILES           "OpenEye OEToolkits" 2.0.6 "Cc1cc2c(cccc2n1c3nc4c(c(n3)NCc5ccccc5)COCC4)C(=O)N"                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
JDP "SYSTEMATIC NAME" ACDLabs              12.01 "1-[4-(benzylamino)-7,8-dihydro-5H-pyrano[4,3-d]pyrimidin-2-yl]-2-methyl-1H-indole-4-carboxamide"        
JDP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "2-methyl-1-[4-[(phenylmethyl)amino]-7,8-dihydro-5~{H}-pyrano[4,3-d]pyrimidin-2-yl]indole-4-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JDP "Create component" 2018-09-04 RCSB 
JDP "Initial release"  2019-01-23 RCSB 
# 
