data_P5P
# 
_chem_comp.id                                    P5P 
_chem_comp.name                                  
;PURINE RIBOSIDE-5'-MONOPHOSPHATE
;
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C10 H13 N4 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               A 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        332.207 
_chem_comp.one_letter_code                       A 
_chem_comp.three_letter_code                     P5P 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1RBN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
P5P N1     N1     N 0 1 Y N N 18.473 25.817 -4.354  -0.886 0.457  6.020  N1     P5P 1  
P5P C2     C2     C 0 1 Y N N 19.080 25.465 -5.492  0.144  1.055  5.452  C2     P5P 2  
P5P N3     N3     N 0 1 Y N N 18.835 25.886 -6.737  0.400  0.948  4.165  N3     P5P 3  
P5P C4     C4     C 0 1 Y N N 17.803 26.774 -6.714  -0.381 0.217  3.383  C4     P5P 4  
P5P C5     C5     C 0 1 Y N N 17.096 27.245 -5.636  -1.497 -0.434 3.948  C5     P5P 5  
P5P C6     C6     C 0 1 Y N N 17.460 26.713 -4.391  -1.723 -0.287 5.317  C6     P5P 6  
P5P N7     N7     N 0 1 Y N N 16.090 28.144 -6.041  -2.120 -1.097 2.944  N7     P5P 7  
P5P C8     C8     C 0 1 Y N N 16.272 28.187 -7.333  -1.480 -0.896 1.829  C8     P5P 8  
P5P N9     N9     N 0 1 Y N N 17.262 27.416 -7.725  -0.403 -0.090 2.046  N9     P5P 9  
P5P "C1'"  "C1'"  C 0 1 N N R 17.714 27.376 -8.971  0.559  0.359  1.037  "C1'"  P5P 10 
P5P "C2'"  "C2'"  C 0 1 N N R 17.394 28.553 -9.932  1.731  -0.640 0.928  "C2'"  P5P 11 
P5P "O2'"  "O2'"  O 0 1 N N N 17.387 28.197 -11.337 2.854  -0.184 1.684  "O2'"  P5P 12 
P5P "C3'"  "C3'"  C 0 1 N N S 18.595 29.443 -9.613  2.066  -0.662 -0.579 "C3'"  P5P 13 
P5P "O3'"  "O3'"  O 0 1 N N N 18.876 30.293 -10.736 3.406  -0.217 -0.801 "O3'"  P5P 14 
P5P "C4'"  "C4'"  C 0 1 N N R 19.730 28.429 -9.312  1.057  0.325  -1.206 "C4'"  P5P 15 
P5P "O4'"  "O4'"  O 0 1 N N N 19.107 27.095 -9.245  -0.047 0.362  -0.273 "O4'"  P5P 16 
P5P "C5'"  "C5'"  C 0 1 N N N 20.525 28.875 -8.040  0.584  -0.179 -2.571 "C5'"  P5P 17 
P5P "O5'"  "O5'"  O 0 1 N N N 21.399 30.040 -8.217  -0.400 0.714  -3.094 "O5'"  P5P 18 
P5P P      P      P 0 1 N N N 22.943 29.930 -8.820  -0.850 0.125  -4.523 P      P5P 19 
P5P OP1    O1P    O 0 1 N N N 23.448 31.207 -9.429  -1.415 -1.231 -4.342 OP1    P5P 20 
P5P OP2    O2P    O 0 1 N N N 22.971 28.732 -9.717  -1.965 1.087  -5.173 OP2    P5P 21 
P5P OP3    O3P    O 0 1 N Y N 23.809 29.601 -7.477  0.427  0.048  -5.499 OP3    P5P 22 
P5P H2     H2     H 0 1 N N N 19.893 24.727 -5.389  0.801  1.654  6.065  H2     P5P 23 
P5P H6     H6     H 0 1 N N N 16.955 26.996 -3.451  -2.563 -0.771 5.793  H6     P5P 24 
P5P H8     H8     H 0 1 N N N 15.660 28.802 -8.013  -1.762 -1.307 0.871  H8     P5P 25 
P5P "H1'"  "H1'"  H 0 1 N N N 17.085 26.477 -9.169  0.930  1.354  1.286  "H1'"  P5P 26 
P5P "H2'"  "H2'"  H 0 1 N N N 16.377 28.987 -9.786  1.421  -1.629 1.265  "H2'"  P5P 27 
P5P "HO2'" "'HO2" H 0 0 N N N 17.191 28.917 -11.924 3.570  -0.815 1.528  "HO2'" P5P 28 
P5P "H3'"  "H3'"  H 0 1 N N N 18.442 30.137 -8.754  1.924  -1.663 -0.987 "H3'"  P5P 29 
P5P "HO3'" "'HO3" H 0 0 N Y N 19.622 30.846 -10.537 3.987  -0.854 -0.364 "HO3'" P5P 30 
P5P "H4'"  "H4'"  H 0 1 N N N 20.507 28.388 -10.110 1.506  1.313  -1.302 "H4'"  P5P 31 
P5P "H5'1" "1H5'" H 0 0 N N N 19.821 29.050 -7.192  1.432  -0.226 -3.254 "H5'1" P5P 32 
P5P "H5'2" "2H5'" H 0 0 N N N 21.110 28.016 -7.635  0.151  -1.173 -2.460 "H5'2" P5P 33 
P5P HOP2   2HOP   H 0 0 N N N 23.854 28.669 -10.061 -2.207 0.700  -6.025 HOP2   P5P 34 
P5P HOP3   3HOP   H 0 0 N N N 24.692 29.538 -7.821  0.763  0.950  -5.590 HOP3   P5P 35 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
P5P N1    C2     SING Y N 1  
P5P N1    C6     DOUB Y N 2  
P5P C2    N3     DOUB Y N 3  
P5P C2    H2     SING N N 4  
P5P N3    C4     SING Y N 5  
P5P C4    C5     DOUB Y N 6  
P5P C4    N9     SING Y N 7  
P5P C5    C6     SING Y N 8  
P5P C5    N7     SING Y N 9  
P5P C6    H6     SING N N 10 
P5P N7    C8     DOUB Y N 11 
P5P C8    N9     SING Y N 12 
P5P C8    H8     SING N N 13 
P5P N9    "C1'"  SING N N 14 
P5P "C1'" "C2'"  SING N N 15 
P5P "C1'" "O4'"  SING N N 16 
P5P "C1'" "H1'"  SING N N 17 
P5P "C2'" "O2'"  SING N N 18 
P5P "C2'" "C3'"  SING N N 19 
P5P "C2'" "H2'"  SING N N 20 
P5P "O2'" "HO2'" SING N N 21 
P5P "C3'" "O3'"  SING N N 22 
P5P "C3'" "C4'"  SING N N 23 
P5P "C3'" "H3'"  SING N N 24 
P5P "O3'" "HO3'" SING N N 25 
P5P "C4'" "O4'"  SING N N 26 
P5P "C4'" "C5'"  SING N N 27 
P5P "C4'" "H4'"  SING N N 28 
P5P "C5'" "O5'"  SING N N 29 
P5P "C5'" "H5'1" SING N N 30 
P5P "C5'" "H5'2" SING N N 31 
P5P "O5'" P      SING N N 32 
P5P P     OP1    DOUB N N 33 
P5P P     OP2    SING N N 34 
P5P P     OP3    SING N N 35 
P5P OP2   HOP2   SING N N 36 
P5P OP3   HOP3   SING N N 37 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
P5P SMILES           ACDLabs              10.04 "O=P(O)(O)OCC3OC(n2cnc1cncnc12)C(O)C3O"                                                                                                            
P5P SMILES_CANONICAL CACTVS               3.341 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3cncnc23"                                                                                       
P5P SMILES           CACTVS               3.341 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)n2cnc3cncnc23"                                                                                              
P5P SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O"                                                                                    
P5P SMILES           "OpenEye OEToolkits" 1.5.0 "c1c2c(ncn1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)O"                                                                                                      
P5P InChI            InChI                1.03  "InChI=1S/C10H13N4O7P/c15-7-6(2-20-22(17,18)19)21-10(8(7)16)14-4-13-5-1-11-3-12-9(5)14/h1,3-4,6-8,10,15-16H,2H2,(H2,17,18,19)/t6-,7-,8-,10-/m1/s1" 
P5P InChIKey         InChI                1.03  MCWDCZIDTUQRHK-FDDDBJFASA-N                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
P5P "SYSTEMATIC NAME" ACDLabs              10.04 "9-(5-O-phosphono-beta-D-ribofuranosyl)-9H-purine"                                  
P5P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-3,4-dihydroxy-5-purin-9-yl-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
P5P "Create component"  1999-07-08 RCSB 
P5P "Modify descriptor" 2011-06-04 RCSB 
# 
