data_PDP
# 
_chem_comp.id                                    PDP 
_chem_comp.name                                  "PYRIDOXAL-5'-DIPHOSPHATE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C8 H11 N O9 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        327.122 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     PDP 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1ABB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
PDP N1   N1   N 0 1 Y N N 41.414 3.391  29.326 2.102  -0.031 3.405  N1   PDP 1  
PDP C2   C2   C 0 1 Y N N 40.922 2.422  30.122 1.379  -0.021 4.504  C2   PDP 2  
PDP C2A  C2A  C 0 1 N N N 40.717 2.678  31.575 2.064  -0.041 5.846  C2A  PDP 3  
PDP C3   C3   C 0 1 Y N N 40.549 1.209  29.571 -0.008 0.002  4.443  C3   PDP 4  
PDP O3   O3   O 0 1 N N N 40.112 0.178  30.408 -0.749 0.012  5.579  O3   PDP 5  
PDP C4   C4   C 0 1 Y N N 40.681 0.980  28.227 -0.630 0.026  3.182  C4   PDP 6  
PDP C4A  C4A  C 0 1 N N N 40.191 -0.290 27.603 -2.097 0.058  3.061  C4A  PDP 7  
PDP O4A  O4A  O 0 1 N Y N 39.161 -0.958 28.230 -2.787 0.068  4.057  O4A  PDP 8  
PDP C5   C5   C 0 1 Y N N 41.215 1.952  27.405 0.187  0.014  2.043  C5   PDP 9  
PDP C6   C6   C 0 1 Y N N 41.557 3.194  27.982 1.557  -0.015 2.204  C6   PDP 10 
PDP C5A  C5A  C 0 1 N N N 41.212 1.798  25.954 -0.420 0.033  0.665  C5A  PDP 11 
PDP O5A  O5A  O 0 1 N N N 40.398 2.906  25.428 0.619  0.015  -0.314 O5A  PDP 12 
PDP PA   PA   P 0 1 N N S 39.956 3.348  23.924 -0.097 0.036  -1.755 PA   PDP 13 
PDP O1A  O1A  O 0 1 N N N 38.483 3.179  23.966 -0.916 1.262  -1.881 O1A  PDP 14 
PDP O3A  O3A  O 0 1 N N N 40.085 4.937  23.425 1.021  0.017  -2.912 O3A  PDP 15 
PDP O2A  O2A  O 0 1 N N N 40.621 2.495  22.897 -1.044 -1.258 -1.902 O2A  PDP 16 
PDP PB   PB   P 0 1 N N N 41.487 5.820  23.427 0.237  0.039  -4.318 PB   PDP 17 
PDP O1B  O1B  O 0 1 N N N 41.658 6.257  24.844 -0.586 1.265  -4.404 O1B  PDP 18 
PDP O2B  O2B  O 0 1 N N N 42.608 4.970  22.870 1.301  0.021  -5.526 O2B  PDP 19 
PDP O3B  O3B  O 0 1 N N N 41.138 6.976  22.566 -0.714 -1.255 -4.423 O3B  PDP 20 
PDP H2A1 1H2A H 0 0 N N N 40.309 1.875  32.233 2.251  0.981  6.174  H2A1 PDP 21 
PDP H2A2 2H2A H 0 0 N N N 41.680 3.033  32.008 1.426  -0.544 6.572  H2A2 PDP 22 
PDP H2A3 3H2A H 0 0 N N N 40.074 3.582  31.685 3.011  -0.574 5.763  H2A3 PDP 23 
PDP HO3  HO3  H 0 1 N N N 39.855 -0.654 30.029 -0.925 -0.910 5.806  HO3  PDP 24 
PDP H4A  H4A  H 0 1 N N N 40.590 -0.735 26.676 -2.558 0.072  2.084  H4A  PDP 25 
PDP H6   H6   H 0 1 N N N 41.943 4.026  27.370 2.193  -0.024 1.331  H6   PDP 26 
PDP H5A1 1H5A H 0 0 N N N 42.233 1.747  25.510 -1.056 -0.843 0.536  H5A1 PDP 27 
PDP H5A2 2H5A H 0 0 N N N 40.867 0.793  25.614 -1.018 0.936  0.543  H5A2 PDP 28 
PDP HOA2 2HOA H 0 0 N N N 40.363 2.752  22.019 -0.472 -2.033 -1.815 HOA2 PDP 29 
PDP HOB2 2HOB H 0 0 N N N 43.411 5.476  22.871 0.791  0.035  -6.348 HOB2 PDP 30 
PDP HOB3 3HOB H 0 0 N N N 41.941 7.482  22.567 -0.139 -2.030 -4.362 HOB3 PDP 31 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PDP N1  C2   DOUB Y N 1  
PDP N1  C6   SING Y N 2  
PDP C2  C2A  SING N N 3  
PDP C2  C3   SING Y N 4  
PDP C2A H2A1 SING N N 5  
PDP C2A H2A2 SING N N 6  
PDP C2A H2A3 SING N N 7  
PDP C3  O3   SING N N 8  
PDP C3  C4   DOUB Y N 9  
PDP O3  HO3  SING N N 10 
PDP C4  C4A  SING N N 11 
PDP C4  C5   SING Y N 12 
PDP C4A O4A  DOUB N N 13 
PDP C4A H4A  SING N N 14 
PDP C5  C6   DOUB Y N 15 
PDP C5  C5A  SING N N 16 
PDP C6  H6   SING N N 17 
PDP C5A O5A  SING N N 18 
PDP C5A H5A1 SING N N 19 
PDP C5A H5A2 SING N N 20 
PDP O5A PA   SING N N 21 
PDP PA  O1A  DOUB N N 22 
PDP PA  O3A  SING N N 23 
PDP PA  O2A  SING N N 24 
PDP O3A PB   SING N N 25 
PDP O2A HOA2 SING N N 26 
PDP PB  O1B  DOUB N N 27 
PDP PB  O2B  SING N N 28 
PDP PB  O3B  SING N N 29 
PDP O2B HOB2 SING N N 30 
PDP O3B HOB3 SING N N 31 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PDP SMILES           ACDLabs              10.04 "O=P(O)(O)OP(=O)(O)OCc1cnc(c(O)c1C=O)C"                                                                             
PDP SMILES_CANONICAL CACTVS               3.341 "Cc1ncc(CO[P@@](O)(=O)O[P](O)(O)=O)c(C=O)c1O"                                                                       
PDP SMILES           CACTVS               3.341 "Cc1ncc(CO[P](O)(=O)O[P](O)(O)=O)c(C=O)c1O"                                                                         
PDP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(cn1)CO[P@](=O)(O)OP(=O)(O)O)C=O)O"                                                                        
PDP SMILES           "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(cn1)COP(=O)(O)OP(=O)(O)O)C=O)O"                                                                           
PDP InChI            InChI                1.03  "InChI=1S/C8H11NO9P2/c1-5-8(11)7(3-10)6(2-9-5)4-17-20(15,16)18-19(12,13)14/h2-3,11H,4H2,1H3,(H,15,16)(H2,12,13,14)" 
PDP InChIKey         InChI                1.03  BLPOUZDLIYAHLN-UHFFFAOYSA-N                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PDP "SYSTEMATIC NAME" ACDLabs              10.04 "(4-formyl-5-hydroxy-6-methylpyridin-3-yl)methyl trihydrogen diphosphate"          
PDP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(5-hydroxy-4-methanoyl-6-methyl-pyridin-3-yl)methyl phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
PDP "Create component"  1999-07-08 EBI  
PDP "Modify descriptor" 2011-06-04 RCSB 
# 
