data_U1P
# 
_chem_comp.id                                    U1P 
_chem_comp.name                                  
;6-[(E)-iminomethyl]uridine 5'-phosphate
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H14 N3 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2008-10-23 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        351.207 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     U1P 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3EWW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
U1P O1P    O1P  O 0 1 N N N 26.340 -9.975  12.799 -4.377 1.855  0.803  O1P  U1P 1  
U1P P      P    P 0 1 N N N 25.301 -10.258 13.859 -4.496 0.919  -0.338 P    U1P 2  
U1P O2P    O2P  O 0 1 N N N 23.995 -10.769 13.287 -5.662 -0.149 -0.036 O2P  U1P 3  
U1P O3P    O3P  O 0 1 N N N 25.838 -11.079 14.948 -4.855 1.743  -1.673 O3P  U1P 4  
U1P N1     N1   N 0 1 N N N 21.281 -4.950  14.005 2.177  0.123  -0.039 N1   U1P 5  
U1P C2     C2   C 0 1 N N N 20.848 -5.901  13.074 2.091  0.973  0.999  C2   U1P 6  
U1P O2     O2   O 0 1 N N N 21.427 -7.009  13.099 1.113  0.937  1.722  O2   U1P 7  
U1P N3     N3   N 0 1 N N N 19.939 -5.649  12.118 3.068  1.863  1.253  N3   U1P 8  
U1P C4     C4   C 0 1 N N N 19.331 -4.453  12.101 4.161  1.922  0.467  C4   U1P 9  
U1P O4     O4   O 0 1 N N N 18.520 -4.270  11.198 5.042  2.729  0.701  O4   U1P 10 
U1P C6     C6   C 0 1 N N N 20.665 -3.717  13.956 3.279  0.141  -0.869 C6   U1P 11 
U1P C5     C5   C 0 1 N N N 19.703 -3.470  12.983 4.277  1.037  -0.635 C5   U1P 12 
U1P "O5'"  O5*  O 0 1 N N N 25.008 -8.844  14.607 -3.099 0.145  -0.544 O5*  U1P 13 
U1P "C5'"  C5*  C 0 1 N N N 24.379 -7.738  13.916 -2.456 -0.592 0.498  C5*  U1P 14 
U1P "C4'"  C4*  C 0 1 N N R 24.068 -6.755  15.043 -1.156 -1.199 -0.034 C4*  U1P 15 
U1P "C3'"  C3*  C 0 1 N N S 23.012 -7.404  15.880 -0.507 -2.103 1.038  C3*  U1P 16 
U1P "O3'"  O3*  O 0 1 N N N 23.460 -7.758  17.185 -0.823 -3.475 0.794  O3*  U1P 17 
U1P "C2'"  C2*  C 0 1 N N R 21.809 -6.483  15.911 1.009  -1.857 0.868  C2*  U1P 18 
U1P "O2'"  O2*  O 0 1 N N N 21.482 -6.129  17.238 1.675  -3.071 0.513  O2*  U1P 19 
U1P "O4'"  O4*  O 0 1 N N N 23.499 -5.577  14.455 -0.182 -0.162 -0.281 O4*  U1P 20 
U1P "C1'"  C1*  C 0 1 N N R 22.241 -5.262  15.078 1.096  -0.835 -0.287 C1*  U1P 21 
U1P C7     C7   C 0 1 N N N 21.098 -2.678  14.797 3.372  -0.798 -2.004 C7   U1P 22 
U1P N8     N8   N 0 1 N N N 22.365 -2.247  14.624 4.447  -0.844 -2.718 N8   U1P 23 
U1P HO2P   HO2P H 0 0 N N N 23.362 -10.876 13.988 -5.796 -0.795 -0.743 HO2P U1P 24 
U1P HO3P   HO3P H 0 0 N N N 25.954 -11.972 14.645 -5.686 2.236  -1.620 HO3P U1P 25 
U1P HN3    HN3  H 0 1 N N N 19.719 -6.341  11.430 2.984  2.467  2.007  HN3  U1P 26 
U1P H5     H5   H 0 1 N N N 19.244 -2.494  12.921 5.146  1.070  -1.276 H5   U1P 27 
U1P "H5'"  H5*  H 0 1 N N N 25.050 -7.295  13.165 -2.232 0.076  1.330  H5*  U1P 28 
U1P "H5'A" H5*A H 0 0 N N N 23.485 -8.038  13.350 -3.116 -1.389 0.840  H5*A U1P 29 
U1P "H4'"  H4*  H 0 1 N N N 24.963 -6.500  15.629 -1.348 -1.767 -0.944 H4*  U1P 30 
U1P "H3'"  H3*  H 0 1 N N N 22.737 -8.366  15.423 -0.832 -1.806 2.035  H3*  U1P 31 
U1P "HO3'" HO3* H 0 0 N Y N 24.407 -7.837  17.185 -0.441 -4.087 1.437  HO3* U1P 32 
U1P "H2'"  H2*  H 0 1 N N N 20.902 -6.952  15.503 1.434  -1.442 1.781  H2*  U1P 33 
U1P "HO2'" HO2* H 0 0 N N N 21.409 -6.915  17.767 1.600  -3.769 1.177  HO2* U1P 34 
U1P "H1'"  H1*  H 0 1 N N N 22.304 -4.394  15.751 1.252  -1.345 -1.237 H1*  U1P 35 
U1P H7     H7   H 0 1 N N N 20.449 -2.246  15.545 2.541  -1.448 -2.237 H7   U1P 36 
U1P HN8    HN8  H 0 1 N N N 22.548 -1.513  15.278 4.508  -1.461 -3.464 HN8  U1P 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
U1P O1P   P      DOUB N N 1  
U1P O2P   P      SING N N 2  
U1P P     "O5'"  SING N N 3  
U1P P     O3P    SING N N 4  
U1P O2P   HO2P   SING N N 5  
U1P O3P   HO3P   SING N N 6  
U1P C2    N1     SING N N 7  
U1P C6    N1     SING N N 8  
U1P N1    "C1'"  SING N N 9  
U1P N3    C2     SING N N 10 
U1P C2    O2     DOUB N N 11 
U1P C4    N3     SING N N 12 
U1P N3    HN3    SING N N 13 
U1P O4    C4     DOUB N N 14 
U1P C4    C5     SING N N 15 
U1P C5    C6     DOUB N N 16 
U1P C6    C7     SING N N 17 
U1P C5    H5     SING N N 18 
U1P "C5'" "O5'"  SING N N 19 
U1P "C5'" "C4'"  SING N N 20 
U1P "C5'" "H5'"  SING N N 21 
U1P "C5'" "H5'A" SING N N 22 
U1P "O4'" "C4'"  SING N N 23 
U1P "C4'" "C3'"  SING N N 24 
U1P "C4'" "H4'"  SING N N 25 
U1P "C3'" "C2'"  SING N N 26 
U1P "C3'" "O3'"  SING N N 27 
U1P "C3'" "H3'"  SING N N 28 
U1P "O3'" "HO3'" SING N N 29 
U1P "C1'" "C2'"  SING N N 30 
U1P "C2'" "O2'"  SING N N 31 
U1P "C2'" "H2'"  SING N N 32 
U1P "O2'" "HO2'" SING N N 33 
U1P "O4'" "C1'"  SING N N 34 
U1P "C1'" "H1'"  SING N N 35 
U1P N8    C7     DOUB N N 36 
U1P C7    H7     SING N N 37 
U1P N8    HN8    SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
U1P SMILES           ACDLabs              10.04 "O=C1NC(=O)N(C(C=[N@H])=C1)C2OC(C(O)C2O)COP(=O)(O)O"                                                                                                                 
U1P SMILES_CANONICAL CACTVS               3.341 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C(=O)NC(=O)C=C2C=N"                                                                                                  
U1P SMILES           CACTVS               3.341 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2C(=O)NC(=O)C=C2C=N"                                                                                                         
U1P SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "[H]/N=C/C1=CC(=O)NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O"                                                                                              
U1P SMILES           "OpenEye OEToolkits" 1.5.0 "[H]N=CC1=CC(=O)NC(=O)N1C2C(C(C(O2)COP(=O)(O)O)O)O"                                                                                                                  
U1P InChI            InChI                1.03  "InChI=1S/C10H14N3O9P/c11-2-4-1-6(14)12-10(17)13(4)9-8(16)7(15)5(22-9)3-21-23(18,19)20/h1-2,5,7-9,11,15-16H,3H2,(H,12,14,17)(H2,18,19,20)/b11-2+/t5-,7-,8-,9-/m1/s1" 
U1P InChIKey         InChI                1.03  GSNYQYNODBCZBM-XDMCGQROSA-N                                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
U1P "SYSTEMATIC NAME" ACDLabs              10.04 
;6-[(E)-iminomethyl]uridine 5'-(dihydrogen phosphate)
;
U1P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-3,4-dihydroxy-5-[6-(iminomethyl)-2,4-dioxo-pyrimidin-1-yl]oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
U1P "Create component"  2008-10-23 RCSB 
U1P "Modify descriptor" 2011-06-04 RCSB 
# 
