data_U5P
#

_chem_comp.id                                   U5P
_chem_comp.name                                 "URIDINE-5'-MONOPHOSPHATE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C9 H13 N2 O9 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2011-06-04
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        U25
_chem_comp.formula_weight                       324.181
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    U5P
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
U5P  N1      N1    N  0  1  N  N  N   8.177   -5.970  34.616   2.462   0.039   0.457  N1      U5P   1  
U5P  C2      C2    C  0  1  N  N  N   9.479   -5.506  34.855   2.453  -0.768  -0.619  C2      U5P   2  
U5P  N3      N3    N  0  1  N  N  N   9.576   -4.182  35.185   3.483  -1.596  -0.871  N3      U5P   3  
U5P  C4      C4    C  0  1  N  N  N   8.523   -3.268  35.305   4.543  -1.636  -0.038  C4      U5P   4  
U5P  C5      C5    C  0  1  N  N  N   7.222   -3.821  35.050   4.563  -0.795   1.101  C5      U5P   5  
U5P  C6      C6    C  0  1  N  N  N   7.087   -5.101  34.725   3.518   0.029   1.327  C6      U5P   6  
U5P  O2      O2    O  0  1  N  N  N  10.440   -6.260  34.763   1.504  -0.743  -1.379  O2      U5P   7  
U5P  O4      O4    O  0  1  N  N  N   8.793   -2.131  35.597   5.474  -2.388  -0.263  O4      U5P   8  
U5P  "C1'"   C1*   C  0  1  N  N  R   8.039   -7.389  34.252   1.328   0.933   0.703  "C1'"   U5P   9  
U5P  "C2'"   C2*   C  0  1  N  N  R   7.203   -8.277  35.153   1.226   1.993  -0.416  "C2'"   U5P  10  
U5P  "O2'"   O2*   O  0  1  N  N  N   7.905   -8.710  36.329   1.823   3.223  -0.001  "O2'"   U5P  11  
U5P  "C3'"   C3*   C  0  1  N  N  S   6.732   -9.409  34.230  -0.294   2.173  -0.626  "C3'"   U5P  12  
U5P  "C4'"   C4*   C  0  1  N  N  R   6.558   -8.659  32.922  -0.934   1.201   0.390  "C4'"   U5P  13  
U5P  "O3'"   O3*   O  0  1  N  N  N   7.686  -10.506  34.190  -0.683   3.519  -0.343  "O3'"   U5P  14  
U5P  "O4'"   O4*   O  0  1  N  N  N   7.568   -7.601  32.936   0.084   0.203   0.633  "O4'"   U5P  15  
U5P  "C5'"   C5*   C  0  1  N  N  N   5.231   -7.971  32.636  -2.187   0.551  -0.201  "C5'"   U5P  16  
U5P  "O5'"   O5*   O  0  1  N  N  N   5.157   -7.416  31.315  -2.782  -0.309   0.773  "O5'"   U5P  17  
U5P  P       P     P  0  1  N  N  N   4.537   -8.239  30.080  -4.087  -0.956   0.087  P       U5P  18  
U5P  O1P     O1P   O  0  1  N  N  N   3.103   -8.686  30.202  -4.968   0.123  -0.413  O1P     U5P  19  
U5P  O2P     O2P   O  0  1  N  N  N   5.315   -9.488  29.842  -3.639  -1.895  -1.141  O2P     U5P  20  
U5P  O3P     O3P   O  0  1  N  N  N   4.857   -7.204  28.843  -4.883  -1.838   1.174  O3P     U5P  21  
U5P  HN3     HN3   H  0  1  N  N  N  10.496   -3.830  35.359   3.462  -2.169  -1.654  HN3     U5P  22  
U5P  H5      H5    H  0  1  N  N  N   6.348   -3.191  35.123   5.403  -0.813   1.779  H5      U5P  23  
U5P  H6      H6    H  0  1  N  N  N   6.096   -5.487  34.537   3.516   0.678   2.191  H6      U5P  24  
U5P  "H1'"   H1*   H  0  1  N  N  N   9.089   -7.693  34.371   1.430   1.417   1.675  "H1'"   U5P  25  
U5P  "H2'"   H2*   H  0  1  N  N  N   6.346   -7.747  35.594   1.697   1.630  -1.330  "H2'"   U5P  26  
U5P  "HO2'"  *HO2  H  0  0  N  N  N   8.829   -8.806  36.130   1.675   3.860  -0.713  "HO2'"  U5P  27  
U5P  "H3'"   H3*   H  0  1  N  N  N   5.813   -9.926  34.542  -0.574   1.902  -1.643  "H3'"   U5P  28  
U5P  "H4'"   H4*   H  0  1  N  N  N   6.634   -9.434  32.145  -1.180   1.726   1.313  "H4'"   U5P  29  
U5P  "HO3'"  *HO3  H  0  0  N  N  N   7.894  -10.713  33.286  -0.231   4.082  -0.987  "HO3'"  U5P  30  
U5P  "H5'1"  1H5*  H  0  0  N  N  N   4.427   -8.714  32.743  -2.899   1.326  -0.485  "H5'1"  U5P  31  
U5P  "H5'2"  2H5*  H  0  0  N  N  N   5.130   -7.139  33.349  -1.913  -0.031  -1.081  "H5'2"  U5P  32  
U5P  HOP2    2HOP  H  0  0  N  N  N   5.481   -9.586  28.912  -3.068  -2.583  -0.773  HOP2    U5P  33  
U5P  HOP3    3HOP  H  0  0  N  N  N   4.919   -6.318  29.179  -5.655  -2.206   0.723  HOP3    U5P  34  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
U5P  N1     C2      SING  N  N   1  
U5P  N1     C6      SING  N  N   2  
U5P  N1     "C1'"   SING  N  N   3  
U5P  C2     N3      SING  N  N   4  
U5P  C2     O2      DOUB  N  N   5  
U5P  N3     C4      SING  N  N   6  
U5P  N3     HN3     SING  N  N   7  
U5P  C4     C5      SING  N  N   8  
U5P  C4     O4      DOUB  N  N   9  
U5P  C5     C6      DOUB  N  N  10  
U5P  C5     H5      SING  N  N  11  
U5P  C6     H6      SING  N  N  12  
U5P  "C1'"  "C2'"   SING  N  N  13  
U5P  "C1'"  "O4'"   SING  N  N  14  
U5P  "C1'"  "H1'"   SING  N  N  15  
U5P  "C2'"  "O2'"   SING  N  N  16  
U5P  "C2'"  "C3'"   SING  N  N  17  
U5P  "C2'"  "H2'"   SING  N  N  18  
U5P  "O2'"  "HO2'"  SING  N  N  19  
U5P  "C3'"  "C4'"   SING  N  N  20  
U5P  "C3'"  "O3'"   SING  N  N  21  
U5P  "C3'"  "H3'"   SING  N  N  22  
U5P  "C4'"  "O4'"   SING  N  N  23  
U5P  "C4'"  "C5'"   SING  N  N  24  
U5P  "C4'"  "H4'"   SING  N  N  25  
U5P  "O3'"  "HO3'"  SING  N  N  26  
U5P  "C5'"  "O5'"   SING  N  N  27  
U5P  "C5'"  "H5'1"  SING  N  N  28  
U5P  "C5'"  "H5'2"  SING  N  N  29  
U5P  "O5'"  P       SING  N  N  30  
U5P  P      O1P     DOUB  N  N  31  
U5P  P      O2P     SING  N  N  32  
U5P  P      O3P     SING  N  N  33  
U5P  O2P    HOP2    SING  N  N  34  
U5P  O3P    HOP3    SING  N  N  35  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
U5P  SMILES            ACDLabs               10.04  "O=C1NC(=O)N(C=C1)C2OC(C(O)C2O)COP(=O)(O)O"  
U5P  SMILES_CANONICAL  CACTVS                3.341  "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=CC(=O)NC2=O"  
U5P  SMILES            CACTVS                3.341  "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2C=CC(=O)NC2=O"  
U5P  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O"  
U5P  SMILES            "OpenEye OEToolkits"  1.5.0  "C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)O)O)O"  
U5P  InChI             InChI                 1.03   "InChI=1S/C9H13N2O9P/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(20-8)3-19-21(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,10,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1"  
U5P  InChIKey          InChI                 1.03   DJJCXFVJDGTHFX-XVFCMESISA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
U5P  "SYSTEMATIC NAME"  ACDLabs               10.04  "5'-uridylic acid"  
U5P  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3S,4R,5R)-5-(2,4-dioxopyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
U5P  "Create component"   1999-07-08  RCSB  
U5P  "Modify descriptor"  2011-06-04  RCSB  
##
