data_5JR
#

_chem_comp.id                                   5JR
_chem_comp.name                                 "N-[2-[[3-(3,5-dimethoxyphenyl)-2-oxidanylidene-1-[3-(4-propanoylpiperazin-1-yl)propyl]-4H-pyrimido[4,5-d]pyrimidin-7-yl]amino]phenyl]propanamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C33 H42 N8 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-08-19
_chem_comp.pdbx_modified_date                   2022-03-25
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       630.737
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5JR
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7V29
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5JR  C1   C1   C  0  1  Y  N  N  43.589   2.076  40.070  -4.911    1.211  -0.786  C1   5JR   1  
5JR  N1   N1   N  0  1  N  N  N  45.038   2.705  35.778  -1.008    0.840   1.018  N1   5JR   2  
5JR  O1   O1   O  0  1  N  N  N  42.287   1.468  41.930  -6.968    0.406  -1.665  O1   5JR   3  
5JR  C2   C2   C  0  1  Y  N  N  44.401   2.967  39.395  -4.209    2.169  -0.067  C2   5JR   4  
5JR  N2   N2   N  0  1  N  N  N  44.959   2.604  38.152  -2.826    2.040   0.106  N2   5JR   5  
5JR  O2   O2   O  0  1  N  N  N  44.670   5.666  41.816  -6.904    4.446   0.842  O2   5JR   6  
5JR  C3   C3   C  0  1  Y  N  N  44.773   4.154  40.009  -4.879    3.255   0.479  C3   5JR   7  
5JR  N3   N3   N  0  1  Y  N  N  47.582  -0.590  35.686   1.805    3.380  -0.499  N3   5JR   8  
5JR  O3   O3   O  0  1  N  N  N  43.515   3.885  36.943  -3.093    0.214   1.305  O3   5JR   9  
5JR  C4   C4   C  0  1  Y  N  N  44.294   4.462  41.272  -6.249    3.383   0.307  C4   5JR  10  
5JR  N4   N4   N  0  1  Y  N  N  46.191   1.033  34.590   1.248    1.491   0.725  N4   5JR  11  
5JR  O4   O4   O  0  1  N  N  N  50.946   0.997  31.085   8.167    1.595  -0.147  O4   5JR  12  
5JR  C5   C5   C  0  1  Y  N  N  43.454   3.585  41.938  -6.950    2.425  -0.410  C5   5JR  13  
5JR  N5   N5   N  0  1  N  N  N  47.363  -0.630  33.442   3.491    2.087   0.469  N5   5JR  14  
5JR  O5   O5   O  0  1  N  N  N  37.855   6.748  34.630   0.458   -8.602   0.191  O5   5JR  15  
5JR  C6   C6   C  0  1  Y  N  N  43.092   2.391  41.322  -6.281    1.340  -0.957  C6   5JR  16  
5JR  N6   N6   N  0  1  N  N  N  49.617  -0.651  31.863   5.998    1.204  -0.407  N6   5JR  17  
5JR  C7   C7   C  0  1  N  N  N  44.380   5.914  43.188  -8.315    4.514   0.626  C7   5JR  18  
5JR  N7   N7   N  0  1  N  N  N  41.662   3.760  32.953   0.333   -3.862   0.810  N7   5JR  19  
5JR  C8   C8   C  0  1  N  N  N  42.082   1.590  43.335  -8.377    0.601  -1.802  C8   5JR  20  
5JR  N8   N8   N  0  1  N  N  N  39.681   5.567  34.150   0.160   -6.443  -0.225  N8   5JR  21  
5JR  C9   C9   C  0  1  Y  N  N  46.427   1.094  36.939  -0.431    2.800  -0.251  C9   5JR  22  
5JR  C10  C10  C  0  1  Y  N  N  45.891   1.606  35.761  -0.046    1.694   0.509  C10  5JR  23  
5JR  C11  C11  C  0  1  N  N  N  44.443   3.096  36.964  -2.321    1.017   0.819  C11  5JR  24  
5JR  C12  C12  C  0  1  N  N  N  46.102   1.719  38.249  -1.904    3.022  -0.491  C12  5JR  25  
5JR  C13  C13  C  0  1  Y  N  N  47.309  -0.049  36.864   0.529    3.644  -0.754  C13  5JR  26  
5JR  C14  C14  C  0  1  Y  N  N  47.024  -0.027  34.602   2.148    2.326   0.227  C14  5JR  27  
5JR  C15  C15  C  0  1  Y  N  N  47.046   0.655  29.488   6.358    4.847  -0.780  C15  5JR  28  
5JR  C16  C16  C  0  1  Y  N  N  45.919   0.659  30.300   5.119    5.283  -0.346  C16  5JR  29  
5JR  C17  C17  C  0  1  Y  N  N  46.014   0.247  31.615   4.167    4.371   0.068  C17  5JR  30  
5JR  C18  C18  C  0  1  Y  N  N  47.236  -0.220  32.131   4.453    3.013   0.050  C18  5JR  31  
5JR  C19  C19  C  0  1  Y  N  N  48.383  -0.202  31.327   5.703    2.574  -0.387  C19  5JR  32  
5JR  C20  C20  C  0  1  Y  N  N  48.265   0.236  29.983   6.652    3.496  -0.801  C20  5JR  33  
5JR  C21  C21  C  0  1  N  N  N  50.817  -0.054  31.694   7.279    0.790  -0.334  C21  5JR  34  
5JR  C22  C22  C  0  1  N  N  N  51.984  -0.774  32.332   7.607   -0.673  -0.485  C22  5JR  35  
5JR  C23  C23  C  0  1  N  N  N  44.745   3.467  34.528  -0.571   -0.315   1.807  C23  5JR  36  
5JR  C24  C24  C  0  1  N  N  N  43.839   2.723  33.572  -0.343   -1.509   0.878  C24  5JR  37  
5JR  C25  C25  C  0  1  N  N  N  42.366   2.862  33.876   0.114   -2.715   1.702  C25  5JR  38  
5JR  C26  C26  C  0  1  N  N  N  51.951  -0.763  33.833   9.119   -0.871  -0.363  C26  5JR  39  
5JR  C27  C27  C  0  1  N  N  N  40.213   3.502  32.998   0.995   -4.963   1.523  C27  5JR  40  
5JR  C28  C28  C  0  1  N  N  N  39.583   4.111  34.227   1.368   -6.063   0.522  C28  5JR  41  
5JR  C29  C29  C  0  1  N  N  N  40.676   6.003  33.166  -0.635   -5.377  -0.853  C29  5JR  42  
5JR  C30  C30  C  0  1  N  N  N  41.933   5.168  33.291  -0.928   -4.304   0.201  C30  5JR  43  
5JR  C31  C31  C  0  1  N  N  N  38.973   6.367  34.975  -0.209   -7.735  -0.333  C31  5JR  44  
5JR  C32  C32  C  0  1  N  N  N  39.566   6.756  36.358  -1.451   -8.102  -1.104  C32  5JR  45  
5JR  C33  C33  C  0  1  N  N  N  40.645   7.823  36.240  -1.641   -9.620  -1.072  C33  5JR  46  
5JR  H1   H1   H  0  1  N  N  N  43.341   1.127  39.617  -4.390    0.368  -1.215  H1   5JR  47  
5JR  H2   H2   H  0  1  N  N  N  45.437   4.839  39.502  -4.333    4.001   1.039  H2   5JR  48  
5JR  H3   H3   H  0  1  N  N  N  43.084   3.825  42.924  -8.017    2.525  -0.544  H3   5JR  49  
5JR  H4   H4   H  0  1  N  N  N  47.779  -1.532  33.553   3.764    1.279   0.930  H4   5JR  50  
5JR  H5   H5   H  0  1  N  N  N  49.597  -1.484  32.416   5.281    0.554  -0.474  H5   5JR  51  
5JR  H6   H6   H  0  1  N  N  N  44.743   6.915  43.465  -8.714    5.409   1.105  H6   5JR  52  
5JR  H7   H7   H  0  1  N  N  N  43.293   5.862  43.348  -8.517    4.554  -0.444  H7   5JR  53  
5JR  H8   H8   H  0  1  N  N  N  44.879   5.157  43.811  -8.791    3.631   1.053  H8   5JR  54  
5JR  H10  H10  H  0  1  N  N  N  41.418   0.784  43.681  -8.839    0.619  -0.815  H10  5JR  55  
5JR  H11  H11  H  0  1  N  N  N  43.049   1.516  43.854  -8.565    1.549  -2.308  H11  5JR  56  
5JR  H12  H12  H  0  1  N  N  N  41.621   2.564  43.555  -8.802   -0.214  -2.388  H12  5JR  57  
5JR  H13  H13  H  0  1  N  N  N  45.877   0.925  38.977  -2.072    3.032  -1.568  H13  5JR  58  
5JR  H14  H14  H  0  1  N  N  N  46.972   2.297  38.594  -2.164    4.008  -0.104  H14  5JR  59  
5JR  H15  H15  H  0  1  N  N  N  47.743  -0.460  37.764   0.252    4.504  -1.346  H15  5JR  60  
5JR  H16  H16  H  0  1  N  N  N  46.968   0.982  28.462   7.097    5.564  -1.106  H16  5JR  61  
5JR  H17  H17  H  0  1  N  N  N  44.969   0.984  29.903   4.895    6.339  -0.331  H17  5JR  62  
5JR  H18  H18  H  0  1  N  N  N  45.143   0.284  32.252   3.201    4.714   0.406  H18  5JR  63  
5JR  H19  H19  H  0  1  N  N  N  49.135   0.242  29.343   7.620    3.160  -1.140  H19  5JR  64  
5JR  H20  H20  H  0  1  N  N  N  51.975  -1.820  31.992   7.102   -1.241   0.296  H20  5JR  65  
5JR  H21  H21  H  0  1  N  N  N  52.914  -0.289  32.001   7.273   -1.021  -1.462  H21  5JR  66  
5JR  H22  H22  H  0  1  N  N  N  45.696   3.677  34.016   0.359   -0.072   2.321  H22  5JR  67  
5JR  H23  H23  H  0  1  N  N  N  44.259   4.415  34.803  -1.337   -0.566   2.540  H23  5JR  68  
5JR  H24  H24  H  0  1  N  N  N  44.100   1.655  33.611  -1.272   -1.752   0.363  H24  5JR  69  
5JR  H25  H25  H  0  1  N  N  N  44.019   3.107  32.557   0.424   -1.259   0.145  H25  5JR  70  
5JR  H26  H26  H  0  1  N  N  N  42.257   3.256  34.897  -0.652   -2.966   2.435  H26  5JR  71  
5JR  H27  H27  H  0  1  N  N  N  41.902   1.866  33.815   1.044   -2.473   2.217  H27  5JR  72  
5JR  H28  H28  H  0  1  N  N  N  52.826  -1.303  34.223   9.357   -1.929  -0.472  H28  5JR  73  
5JR  H29  H29  H  0  1  N  N  N  51.971   0.276  34.192   9.625   -0.303  -1.143  H29  5JR  74  
5JR  H30  H30  H  0  1  N  N  N  51.031  -1.255  34.183   9.454   -0.523   0.615  H30  5JR  75  
5JR  H31  H31  H  0  1  N  N  N  39.744   3.937  32.103   1.898   -4.592   2.008  H31  5JR  76  
5JR  H32  H32  H  0  1  N  N  N  40.043   2.415  33.010   0.319   -5.370   2.274  H32  5JR  77  
5JR  H33  H33  H  0  1  N  N  N  38.525   3.816  34.281   1.755   -6.930   1.058  H33  5JR  78  
5JR  H34  H34  H  0  1  N  N  N  40.109   3.754  35.125   2.124   -5.689  -0.168  H34  5JR  79  
5JR  H35  H35  H  0  1  N  N  N  40.923   7.060  33.342  -0.071   -4.937  -1.676  H35  5JR  80  
5JR  H36  H36  H  0  1  N  N  N  40.261   5.887  32.154  -1.572   -5.789  -1.227  H36  5JR  81  
5JR  H37  H37  H  0  1  N  N  N  42.303   5.226  34.325  -1.578   -4.719   0.971  H37  5JR  82  
5JR  H38  H38  H  0  1  N  N  N  42.698   5.563  32.606  -1.421   -3.454  -0.272  H38  5JR  83  
5JR  H39  H39  H  0  1  N  N  N  38.756   7.140  36.996  -2.316   -7.618  -0.651  H39  5JR  84  
5JR  H40  H40  H  0  1  N  N  N  40.003   5.859  36.821  -1.348   -7.771  -2.137  H40  5JR  85  
5JR  H41  H41  H  0  1  N  N  N  41.033   8.065  37.240  -0.775  -10.104  -1.525  H41  5JR  86  
5JR  H42  H42  H  0  1  N  N  N  41.465   7.447  35.610  -1.743   -9.952  -0.039  H42  5JR  87  
5JR  H43  H43  H  0  1  N  N  N  40.217   8.728  35.784  -2.539   -9.886  -1.630  H43  5JR  88  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5JR  C15  C20  DOUB  Y  N   1  
5JR  C15  C16  SING  Y  N   2  
5JR  C20  C19  SING  Y  N   3  
5JR  C16  C17  DOUB  Y  N   4  
5JR  O4   C21  DOUB  N  N   5  
5JR  C19  N6   SING  N  N   6  
5JR  C19  C18  DOUB  Y  N   7  
5JR  C17  C18  SING  Y  N   8  
5JR  C21  N6   SING  N  N   9  
5JR  C21  C22  SING  N  N  10  
5JR  C18  N5   SING  N  N  11  
5JR  C22  C26  SING  N  N  12  
5JR  N7   C27  SING  N  N  13  
5JR  N7   C30  SING  N  N  14  
5JR  N7   C25  SING  N  N  15  
5JR  C27  C28  SING  N  N  16  
5JR  C29  C30  SING  N  N  17  
5JR  C29  N8   SING  N  N  18  
5JR  N5   C14  SING  N  N  19  
5JR  C24  C25  SING  N  N  20  
5JR  C24  C23  SING  N  N  21  
5JR  N8   C28  SING  N  N  22  
5JR  N8   C31  SING  N  N  23  
5JR  C23  N1   SING  N  N  24  
5JR  N4   C14  DOUB  Y  N  25  
5JR  N4   C10  SING  Y  N  26  
5JR  C14  N3   SING  Y  N  27  
5JR  O5   C31  DOUB  N  N  28  
5JR  C31  C32  SING  N  N  29  
5JR  N3   C13  DOUB  Y  N  30  
5JR  C10  N1   SING  N  N  31  
5JR  C10  C9   DOUB  Y  N  32  
5JR  N1   C11  SING  N  N  33  
5JR  C33  C32  SING  N  N  34  
5JR  C13  C9   SING  Y  N  35  
5JR  C9   C12  SING  N  N  36  
5JR  O3   C11  DOUB  N  N  37  
5JR  C11  N2   SING  N  N  38  
5JR  N2   C12  SING  N  N  39  
5JR  N2   C2   SING  N  N  40  
5JR  C2   C3   DOUB  Y  N  41  
5JR  C2   C1   SING  Y  N  42  
5JR  C3   C4   SING  Y  N  43  
5JR  C1   C6   DOUB  Y  N  44  
5JR  C4   O2   SING  N  N  45  
5JR  C4   C5   DOUB  Y  N  46  
5JR  C6   O1   SING  N  N  47  
5JR  C6   C5   SING  Y  N  48  
5JR  O2   C7   SING  N  N  49  
5JR  O1   C8   SING  N  N  50  
5JR  C1   H1   SING  N  N  51  
5JR  C3   H2   SING  N  N  52  
5JR  C5   H3   SING  N  N  53  
5JR  N5   H4   SING  N  N  54  
5JR  N6   H5   SING  N  N  55  
5JR  C7   H6   SING  N  N  56  
5JR  C7   H7   SING  N  N  57  
5JR  C7   H8   SING  N  N  58  
5JR  C8   H10  SING  N  N  59  
5JR  C8   H11  SING  N  N  60  
5JR  C8   H12  SING  N  N  61  
5JR  C12  H13  SING  N  N  62  
5JR  C12  H14  SING  N  N  63  
5JR  C13  H15  SING  N  N  64  
5JR  C15  H16  SING  N  N  65  
5JR  C16  H17  SING  N  N  66  
5JR  C17  H18  SING  N  N  67  
5JR  C20  H19  SING  N  N  68  
5JR  C22  H20  SING  N  N  69  
5JR  C22  H21  SING  N  N  70  
5JR  C23  H22  SING  N  N  71  
5JR  C23  H23  SING  N  N  72  
5JR  C24  H24  SING  N  N  73  
5JR  C24  H25  SING  N  N  74  
5JR  C25  H26  SING  N  N  75  
5JR  C25  H27  SING  N  N  76  
5JR  C26  H28  SING  N  N  77  
5JR  C26  H29  SING  N  N  78  
5JR  C26  H30  SING  N  N  79  
5JR  C27  H31  SING  N  N  80  
5JR  C27  H32  SING  N  N  81  
5JR  C28  H33  SING  N  N  82  
5JR  C28  H34  SING  N  N  83  
5JR  C29  H35  SING  N  N  84  
5JR  C29  H36  SING  N  N  85  
5JR  C30  H37  SING  N  N  86  
5JR  C30  H38  SING  N  N  87  
5JR  C32  H39  SING  N  N  88  
5JR  C32  H40  SING  N  N  89  
5JR  C33  H41  SING  N  N  90  
5JR  C33  H42  SING  N  N  91  
5JR  C33  H43  SING  N  N  92  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5JR  InChI             InChI                 1.03   "InChI=1S/C33H42N8O5/c1-5-29(42)35-27-10-7-8-11-28(27)36-32-34-21-23-22-41(24-18-25(45-3)20-26(19-24)46-4)33(44)40(31(23)37-32)13-9-12-38-14-16-39(17-15-38)30(43)6-2/h7-8,10-11,18-21H,5-6,9,12-17,22H2,1-4H3,(H,35,42)(H,34,36,37)"  
5JR  InChIKey          InChI                 1.03   YKUVMKFEISXAJC-UHFFFAOYSA-N  
5JR  SMILES_CANONICAL  CACTVS                3.385  "CCC(=O)Nc1ccccc1Nc2ncc3CN(C(=O)N(CCCN4CCN(CC4)C(=O)CC)c3n2)c5cc(OC)cc(OC)c5"  
5JR  SMILES            CACTVS                3.385  "CCC(=O)Nc1ccccc1Nc2ncc3CN(C(=O)N(CCCN4CCN(CC4)C(=O)CC)c3n2)c5cc(OC)cc(OC)c5"  
5JR  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCC(=O)Nc1ccccc1Nc2ncc3c(n2)N(C(=O)N(C3)c4cc(cc(c4)OC)OC)CCCN5CCN(CC5)C(=O)CC"  
5JR  SMILES            "OpenEye OEToolkits"  2.0.7  "CCC(=O)Nc1ccccc1Nc2ncc3c(n2)N(C(=O)N(C3)c4cc(cc(c4)OC)OC)CCCN5CCN(CC5)C(=O)CC"  
#
_pdbx_chem_comp_identifier.comp_id          5JR
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "~{N}-[2-[[3-(3,5-dimethoxyphenyl)-2-oxidanylidene-1-[3-(4-propanoylpiperazin-1-yl)propyl]-4~{H}-pyrimido[4,5-d]pyrimidin-7-yl]amino]phenyl]propanamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5JR  "Create component"  2021-08-19  PDBJ  
5JR  "Initial release"   2022-03-30  RCSB  
##
