data_UJR
# 
_chem_comp.id                                    UJR 
_chem_comp.name                                  "(2~{R})-2-azanyl-3-(5-iodanylpyrimidin-2-yl)sulfanyl-propanal" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C7 H8 I N3 O S" 
_chem_comp.mon_nstd_parent_comp_id               CYS 
_chem_comp.pdbx_synonyms                         "arylated cysteine" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-06 
_chem_comp.pdbx_modified_date                    2023-12-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        309.127 
_chem_comp.one_letter_code                       C 
_chem_comp.three_letter_code                     UJR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8CG7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
UJR N1 N1 N 0 1 Y N N N N N 87.847 66.140 -21.311 -0.123 -1.857 0.021  N1 UJR 1  
UJR N2 N2 N 0 1 Y N N N N N 89.063 66.451 -19.275 -0.729 0.371  0.160  N2 UJR 2  
UJR C5 C5 C 0 1 Y N N N N N 87.954 66.154 -18.589 0.536  0.755  0.117  C5 UJR 3  
UJR C4 C4 C 0 1 Y N N N N N 86.761 65.840 -19.211 1.531  -0.206 0.021  C4 UJR 4  
UJR C3 C3 C 0 1 Y N N N N N 86.755 65.845 -20.594 1.160  -1.542 -0.026 C3 UJR 5  
UJR C2 C2 C 0 1 Y N N N N N 88.939 66.425 -20.602 -1.050 -0.914 0.113  C2 UJR 6  
UJR O  O  O 0 1 N N N Y N Y 89.276 65.126 -25.900 -6.453 1.824  -0.396 O  UJR 7  
UJR C  C  C 0 1 N N N Y N Y 88.946 65.020 -24.744 -5.680 1.458  0.456  C  UJR 8  
UJR CA CA C 0 1 N N R Y N N 89.946 65.138 -23.611 -5.039 0.098  0.358  CA UJR 9  
UJR N  N  N 0 1 N N N Y Y N 91.279 64.684 -24.020 -5.515 -0.581 -0.855 N  UJR 10 
UJR CB CB C 0 1 N N N N N N 90.011 66.607 -23.207 -3.518 0.254  0.291  CB UJR 11 
UJR S  S  S 0 1 N N N N N N 90.413 66.821 -21.463 -2.748 -1.380 0.173  S  UJR 12 
UJR I  I  I 0 1 N N N N N N 85.043 65.378 -18.096 3.550  0.347  -0.050 I  UJR 13 
UJR H1 H1 H 0 1 N N N N N N 87.992 66.160 -17.510 0.790  1.803  0.155  H1 UJR 14 
UJR H4 H2 H 0 1 N N N N N N 85.839 65.603 -21.113 1.911  -2.315 -0.101 H2 UJR 15 
UJR H3 H3 H 0 1 N N N Y N Y 87.908 64.836 -24.510 -5.447 2.106  1.288  H3 UJR 16 
UJR HA H4 H 0 1 N N N Y N N 89.595 64.544 -22.754 -5.305 -0.494 1.234  H4 UJR 17 
UJR H  H5 H 0 1 N N N Y Y N 91.913 64.775 -23.252 -5.280 -0.053 -1.681 H5 UJR 18 
UJR H2 H6 H 0 1 N Y N Y Y N 91.233 63.726 -24.302 -5.149 -1.520 -0.910 H6 UJR 19 
UJR H8 H8 H 0 1 N N N N N N 90.783 67.106 -23.812 -3.252 0.845  -0.585 H8 UJR 20 
UJR H9 H9 H 0 1 N N N N N N 89.034 67.071 -23.404 -3.165 0.758  1.191  H9 UJR 21 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
UJR O  C  DOUB N N 1  
UJR C  CA SING N N 2  
UJR N  CA SING N N 3  
UJR CA CB SING N N 4  
UJR CB S  SING N N 5  
UJR S  C2 SING N N 6  
UJR N1 C2 DOUB Y N 7  
UJR N1 C3 SING Y N 8  
UJR C2 N2 SING Y N 9  
UJR C3 C4 DOUB Y N 10 
UJR N2 C5 DOUB Y N 11 
UJR C4 C5 SING Y N 12 
UJR C4 I  SING N N 13 
UJR C5 H1 SING N N 14 
UJR C3 H4 SING N N 15 
UJR C  H3 SING N N 16 
UJR CA HA SING N N 17 
UJR N  H  SING N N 18 
UJR N  H2 SING N N 19 
UJR CB H8 SING N N 20 
UJR CB H9 SING N N 21 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
UJR InChI            InChI                1.06  "InChI=1S/C7H8IN3OS/c8-5-1-10-7(11-2-5)13-4-6(9)3-12/h1-3,6H,4,9H2/t6-/m1/s1" 
UJR InChIKey         InChI                1.06  MJAWREUUBHZDOO-ZCFIWIBFSA-N                                                   
UJR SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CSc1ncc(I)cn1)C=O"                                                   
UJR SMILES           CACTVS               3.385 "N[CH](CSc1ncc(I)cn1)C=O"                                                     
UJR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cnc(n1)SC[C@@H](C=O)N)I"                                                 
UJR SMILES           "OpenEye OEToolkits" 2.0.7 "c1c(cnc(n1)SCC(C=O)N)I"                                                      
# 
_pdbx_chem_comp_identifier.comp_id           UJR 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R})-2-azanyl-3-(5-iodanylpyrimidin-2-yl)sulfanyl-propanal" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
UJR "Create component" 2023-02-06 PDBE 
UJR "Modify backbone"  2023-11-03 PDBE 
UJR "Initial release"  2023-12-13 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      UJR 
_pdbx_chem_comp_synonyms.name         "arylated cysteine" 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
