data_WYR
# 
_chem_comp.id                                    WYR 
_chem_comp.name                                  "N-[(benzyloxy)carbonyl]-4-fluoro-L-phenylalanyl-N-{(2S,3R)-3-hydroxy-4-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]-4-[(propan-2-yl)amino]butan-2-yl}-L-leucinamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H46 F N5 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         GSK3487016A 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-17 
_chem_comp.pdbx_modified_date                    2024-02-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        655.757 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WYR 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8ULD 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WYR O30 O1  O 0 1 N N N N N N 17.767 -1.681 23.521 -2.601 0.679  0.600  O30 WYR 1  
WYR C32 C1  C 0 1 N N S N N N 15.079 -2.646 23.721 -4.847 0.275  -0.839 C32 WYR 2  
WYR C33 C2  C 0 1 N N N N N N 13.735 -1.893 24.068 -4.682 1.276  -1.983 C33 WYR 3  
WYR C34 C3  C 0 1 N N S N N N 13.958 -0.433 24.490 -5.814 2.305  -1.928 C34 WYR 4  
WYR C35 C4  C 0 1 N N N N N N 14.548 -0.228 25.902 -5.671 3.329  -3.078 C35 WYR 5  
WYR C36 C5  C 0 1 N N N N N N 13.941 1.023  26.481 -4.883 4.466  -2.390 C36 WYR 6  
WYR C38 C6  C 0 1 N N N N N N 12.708 0.382  24.538 -5.710 3.140  -0.671 C38 WYR 7  
WYR C40 C7  C 0 1 N N R N N N 14.837 -4.201 23.494 -6.130 -0.533 -1.048 C40 WYR 8  
WYR O41 O2  O 0 1 N N N N N N 16.079 -4.763 22.652 -6.052 -1.237 -2.289 O41 WYR 9  
WYR C42 C8  C 0 1 N N N N N N 14.920 -4.901 24.856 -6.292 -1.519 0.080  C42 WYR 10 
WYR C45 C9  C 0 1 N N N N N N 16.344 -6.184 26.636 -6.646 -2.037 2.434  C45 WYR 11 
WYR C46 C10 C 0 1 N N N N N N 16.863 -5.199 27.754 -5.267 -2.452 2.951  C46 WYR 12 
WYR C47 C11 C 0 1 N N N N N N 17.337 -7.367 26.475 -7.442 -1.389 3.568  C47 WYR 13 
WYR C01 C12 C 0 1 N N N N N N 20.535 -2.808 18.867 -2.399 -3.799 -1.145 C01 WYR 14 
WYR C02 C13 C 0 1 N N N N N N 19.043 -2.609 19.244 -2.729 -3.240 0.241  C02 WYR 15 
WYR C03 C14 C 0 1 N N N N N N 18.352 -1.594 18.287 -2.977 -4.397 1.212  C03 WYR 16 
WYR C04 C15 C 0 1 N N N N N N 18.893 -2.275 20.779 -1.556 -2.396 0.743  C04 WYR 17 
WYR C05 C16 C 0 1 N N S N N N 17.824 -1.167 21.183 -1.373 -1.183 -0.171 C05 WYR 18 
WYR N06 N1  N 0 1 N N N N N N 18.425 0.138  21.408 -0.203 -0.415 0.265  N06 WYR 19 
WYR C07 C17 C 0 1 N N N N N N 17.650 1.271  21.807 1.019  -0.720 -0.214 C07 WYR 20 
WYR O08 O3  O 0 1 N N N N N N 16.437 1.167  21.951 1.140  -1.568 -1.073 O08 WYR 21 
WYR C09 C18 C 0 1 N N S N N N 18.318 2.717  22.094 2.236  -0.007 0.318  C09 WYR 22 
WYR C10 C19 C 0 1 N N N N N N 17.895 3.257  23.529 2.101  1.494  0.058  C10 WYR 23 
WYR C11 C20 C 0 1 Y N N N N N 18.962 4.168  24.229 3.257  2.220  0.697  C11 WYR 24 
WYR C12 C21 C 0 1 Y N N N N N 18.669 5.510  24.648 3.157  2.666  2.002  C12 WYR 25 
WYR C13 C22 C 0 1 Y N N N N N 19.648 6.343  25.287 4.216  3.331  2.589  C13 WYR 26 
WYR C14 C23 C 0 1 Y N N N N N 20.954 5.823  25.508 5.378  3.552  1.869  C14 WYR 27 
WYR F15 F1  F 0 1 N N N N N N 21.896 6.591  26.109 6.415  4.202  2.442  F15 WYR 28 
WYR C16 C24 C 0 1 Y N N N N N 21.289 4.504  25.108 5.478  3.105  0.563  C16 WYR 29 
WYR C17 C25 C 0 1 Y N N N N N 20.295 3.696  24.478 4.419  2.435  -0.020 C17 WYR 30 
WYR N18 N2  N 0 1 N N N N N N 17.981 3.731  21.028 3.433  -0.515 -0.358 N18 WYR 31 
WYR C19 C26 C 0 1 N N N N N N 18.811 3.920  19.906 4.634  -0.433 0.248  C19 WYR 32 
WYR O20 O4  O 0 1 N N N N N N 19.959 3.474  19.884 4.724  0.061  1.355  O20 WYR 33 
WYR O21 O5  O 0 1 N N N N N N 18.390 4.621  18.771 5.734  -0.899 -0.373 O21 WYR 34 
WYR C22 C27 C 0 1 N N N N N N 19.357 5.246  17.863 6.994  -0.779 0.339  C22 WYR 35 
WYR C23 C28 C 0 1 Y N N N N N 20.235 6.438  18.489 8.104  -1.349 -0.505 C23 WYR 36 
WYR C24 C29 C 0 1 Y N N N N N 21.523 6.182  19.058 8.433  -2.688 -0.401 C24 WYR 37 
WYR C25 C30 C 0 1 Y N N N N N 22.314 7.236  19.605 9.452  -3.211 -1.175 C25 WYR 38 
WYR C26 C31 C 0 1 Y N N N N N 21.830 8.571  19.598 10.142 -2.395 -2.053 C26 WYR 39 
WYR C27 C32 C 0 1 Y N N N N N 20.559 8.842  19.038 9.813  -1.057 -2.156 C27 WYR 40 
WYR C28 C33 C 0 1 Y N N N N N 19.779 7.783  18.494 8.790  -0.535 -1.386 C28 WYR 41 
WYR C29 C34 C 0 1 N N N N N N 17.092 -1.697 22.493 -2.600 -0.311 -0.100 C29 WYR 42 
WYR N31 N3  N 0 1 N N N N N N 15.769 -2.125 22.529 -3.697 -0.632 -0.814 N31 WYR 43 
WYR N37 N4  N 0 1 N N N N N N 12.691 1.205  25.659 -5.191 4.346  -0.960 N37 WYR 44 
WYR O39 O6  O 0 1 N N N N N N 11.861 0.240  23.590 -6.046 2.775  0.435  O39 WYR 45 
WYR O43 O7  O 0 1 N N N N N N 13.877 -4.883 25.486 -6.246 -2.710 -0.145 O43 WYR 46 
WYR N44 N5  N 0 1 N N N N N N 16.130 -5.489 25.317 -6.488 -1.078 1.338  N44 WYR 47 
WYR H1  H1  H 0 1 N N N N N N 15.747 -2.543 24.589 -4.906 0.812  0.108  H1  WYR 48 
WYR H2  H2  H 0 1 N N N N N N 13.086 -1.906 23.180 -3.724 1.786  -1.885 H2  WYR 49 
WYR H3  H3  H 0 1 N N N N N N 13.238 -2.425 24.893 -4.718 0.748  -2.936 H3  WYR 50 
WYR H4  H4  H 0 1 N N N N N N 14.647 0.027  23.767 -6.783 1.807  -1.976 H4  WYR 51 
WYR H5  H5  H 0 1 N N N N N N 14.303 -1.091 26.538 -5.103 2.908  -3.907 H5  WYR 52 
WYR H6  H6  H 0 1 N N N N N N 15.641 -0.118 25.838 -6.648 3.678  -3.413 H6  WYR 53 
WYR H7  H7  H 0 1 N N N N N N 14.619 1.882  26.365 -3.814 4.339  -2.557 H7  WYR 54 
WYR H8  H8  H 0 1 N N N N N N 13.698 0.889  27.545 -5.211 5.434  -2.767 H8  WYR 55 
WYR H9  H9  H 0 1 N N N N N N 13.883 -4.392 22.980 -6.985 0.142  -1.066 H9  WYR 56 
WYR H10 H10 H 0 1 N N N N N N 15.964 -5.694 22.499 -5.312 -1.857 -2.344 H10 WYR 57 
WYR H11 H11 H 0 1 N N N N N N 15.381 -6.594 26.974 -7.178 -2.917 2.073  H11 WYR 58 
WYR H12 H12 H 0 1 N N N N N N 17.003 -5.752 28.694 -5.384 -3.165 3.767  H12 WYR 59 
WYR H13 H13 H 0 1 N N N N N N 17.822 -4.761 27.440 -4.700 -2.914 2.144  H13 WYR 60 
WYR H14 H14 H 0 1 N N N N N N 16.126 -4.397 27.907 -4.735 -1.572 3.312  H14 WYR 61 
WYR H15 H15 H 0 1 N N N N N N 17.480 -7.861 27.447 -6.910 -0.509 3.929  H15 WYR 62 
WYR H16 H16 H 0 1 N N N N N N 16.931 -8.090 25.752 -8.425 -1.093 3.200  H16 WYR 63 
WYR H17 H17 H 0 1 N N N N N N 18.303 -6.988 26.111 -7.560 -2.102 4.384  H17 WYR 64 
WYR H18 H18 H 0 1 N N N N N N 20.996 -3.529 19.559 -2.322 -2.979 -1.858 H18 WYR 65 
WYR H19 H19 H 0 1 N N N N N N 20.605 -3.191 17.838 -1.451 -4.336 -1.104 H19 WYR 66 
WYR H20 H20 H 0 1 N N N N N N 21.062 -1.845 18.936 -3.190 -4.481 -1.459 H20 WYR 67 
WYR H21 H21 H 0 1 N N N N N N 18.546 -3.578 19.087 -3.623 -2.619 0.179  H21 WYR 68 
WYR H22 H22 H 0 1 N N N N N N 17.298 -1.474 18.578 -2.083 -5.017 1.274  H22 WYR 69 
WYR H23 H23 H 0 1 N N N N N N 18.863 -0.622 18.352 -3.212 -3.998 2.199  H23 WYR 70 
WYR H24 H24 H 0 1 N N N N N N 18.406 -1.969 17.254 -3.813 -4.998 0.854  H24 WYR 71 
WYR H25 H25 H 0 1 N N N N N N 18.615 -3.206 21.294 -1.759 -2.059 1.759  H25 WYR 72 
WYR H26 H26 H 0 1 N N N N N N 19.875 -1.935 21.141 -0.646 -2.997 0.735  H26 WYR 73 
WYR H27 H27 H 0 1 N N N N N N 17.078 -1.102 20.377 -1.225 -1.519 -1.197 H27 WYR 74 
WYR H28 H28 H 0 1 N N N N N N 19.411 0.246  21.280 -0.309 0.312  0.897  H28 WYR 75 
WYR H29 H29 H 0 1 N N N N N N 19.409 2.574  22.104 2.321  -0.185 1.390  H29 WYR 76 
WYR H30 H30 H 0 1 N N N N N N 16.969 3.839  23.416 2.105  1.679  -1.016 H30 WYR 77 
WYR H31 H31 H 0 1 N N N N N N 17.706 2.390  24.179 1.165  1.855  0.485  H31 WYR 78 
WYR H32 H32 H 0 1 N N N N N N 17.679 5.906  24.477 2.250  2.494  2.562  H32 WYR 79 
WYR H33 H33 H 0 1 N N N N N N 19.398 7.347  25.595 4.137  3.680  3.608  H33 WYR 80 
WYR H34 H34 H 0 1 N N N N N N 22.283 4.116  25.278 6.384  3.276  0.001  H34 WYR 81 
WYR H35 H35 H 0 1 N N N N N N 20.555 2.692  24.177 4.498  2.082  -1.038 H35 WYR 82 
WYR H36 H36 H 0 1 N N N N N N 17.151 4.280  21.120 3.361  -0.909 -1.241 H36 WYR 83 
WYR H37 H37 H 0 1 N N N N N N 18.801 5.651  17.005 7.196  0.273  0.544  H37 WYR 84 
WYR H38 H38 H 0 1 N N N N N N 20.048 4.464  17.516 6.933  -1.327 1.280  H38 WYR 85 
WYR H39 H39 H 0 1 N N N N N N 21.904 5.171  19.074 7.894  -3.325 0.285  H39 WYR 86 
WYR H40 H40 H 0 1 N N N N N N 23.284 7.018  20.026 9.709  -4.257 -1.094 H40 WYR 87 
WYR H41 H41 H 0 1 N N N N N N 22.425 9.370  20.015 10.938 -2.804 -2.658 H41 WYR 88 
WYR H42 H42 H 0 1 N N N N N N 20.180 9.853  19.023 10.352 -0.419 -2.842 H42 WYR 89 
WYR H43 H43 H 0 1 N N N N N N 18.811 8.009  18.072 8.530  0.510  -1.470 H43 WYR 90 
WYR H44 H44 H 0 1 N N N N N N 15.245 -2.075 21.679 -3.725 -1.464 -1.312 H44 WYR 91 
WYR H45 H45 H 0 1 N N N N N N 11.948 1.834  25.889 -5.039 5.047  -0.306 H45 WYR 92 
WYR H46 H46 H 0 1 N N N N N N 16.918 -5.436 24.704 -6.525 -0.126 1.518  H46 WYR 93 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WYR C22 C23 SING N N 1  
WYR C22 O21 SING N N 2  
WYR C03 C02 SING N N 3  
WYR C23 C28 DOUB Y N 4  
WYR C23 C24 SING Y N 5  
WYR C28 C27 SING Y N 6  
WYR O21 C19 SING N N 7  
WYR C01 C02 SING N N 8  
WYR C27 C26 DOUB Y N 9  
WYR C24 C25 DOUB Y N 10 
WYR C02 C04 SING N N 11 
WYR C26 C25 SING Y N 12 
WYR O20 C19 DOUB N N 13 
WYR C19 N18 SING N N 14 
WYR C04 C05 SING N N 15 
WYR N18 C09 SING N N 16 
WYR C05 N06 SING N N 17 
WYR C05 C29 SING N N 18 
WYR N06 C07 SING N N 19 
WYR C07 O08 DOUB N N 20 
WYR C07 C09 SING N N 21 
WYR C09 C10 SING N N 22 
WYR C29 N31 SING N N 23 
WYR C29 O30 DOUB N N 24 
WYR N31 C32 SING N N 25 
WYR O41 C40 SING N N 26 
WYR C40 C32 SING N N 27 
WYR C40 C42 SING N N 28 
WYR C10 C11 SING N N 29 
WYR O39 C38 DOUB N N 30 
WYR C32 C33 SING N N 31 
WYR C33 C34 SING N N 32 
WYR C11 C17 DOUB Y N 33 
WYR C11 C12 SING Y N 34 
WYR C17 C16 SING Y N 35 
WYR C34 C38 SING N N 36 
WYR C34 C35 SING N N 37 
WYR C38 N37 SING N N 38 
WYR C12 C13 DOUB Y N 39 
WYR C42 N44 SING N N 40 
WYR C42 O43 DOUB N N 41 
WYR C16 C14 DOUB Y N 42 
WYR C13 C14 SING Y N 43 
WYR N44 C45 SING N N 44 
WYR C14 F15 SING N N 45 
WYR N37 C36 SING N N 46 
WYR C35 C36 SING N N 47 
WYR C47 C45 SING N N 48 
WYR C45 C46 SING N N 49 
WYR C32 H1  SING N N 50 
WYR C33 H2  SING N N 51 
WYR C33 H3  SING N N 52 
WYR C34 H4  SING N N 53 
WYR C35 H5  SING N N 54 
WYR C35 H6  SING N N 55 
WYR C36 H7  SING N N 56 
WYR C36 H8  SING N N 57 
WYR C40 H9  SING N N 58 
WYR O41 H10 SING N N 59 
WYR C45 H11 SING N N 60 
WYR C46 H12 SING N N 61 
WYR C46 H13 SING N N 62 
WYR C46 H14 SING N N 63 
WYR C47 H15 SING N N 64 
WYR C47 H16 SING N N 65 
WYR C47 H17 SING N N 66 
WYR C01 H18 SING N N 67 
WYR C01 H19 SING N N 68 
WYR C01 H20 SING N N 69 
WYR C02 H21 SING N N 70 
WYR C03 H22 SING N N 71 
WYR C03 H23 SING N N 72 
WYR C03 H24 SING N N 73 
WYR C04 H25 SING N N 74 
WYR C04 H26 SING N N 75 
WYR C05 H27 SING N N 76 
WYR N06 H28 SING N N 77 
WYR C09 H29 SING N N 78 
WYR C10 H30 SING N N 79 
WYR C10 H31 SING N N 80 
WYR C12 H32 SING N N 81 
WYR C13 H33 SING N N 82 
WYR C16 H34 SING N N 83 
WYR C17 H35 SING N N 84 
WYR N18 H36 SING N N 85 
WYR C22 H37 SING N N 86 
WYR C22 H38 SING N N 87 
WYR C24 H39 SING N N 88 
WYR C25 H40 SING N N 89 
WYR C26 H41 SING N N 90 
WYR C27 H42 SING N N 91 
WYR C28 H43 SING N N 92 
WYR N31 H44 SING N N 93 
WYR N37 H45 SING N N 94 
WYR N44 H46 SING N N 95 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WYR SMILES           ACDLabs              12.01 "Fc1ccc(cc1)CC(NC(=O)OCc1ccccc1)C(=O)NC(CC(C)C)C(=O)NC(CC1CCNC1=O)C(O)C(=O)NC(C)C"                                                                                                                                                                                                   
WYR InChI            InChI                1.06  "InChI=1S/C34H46FN5O7/c1-20(2)16-27(31(43)38-26(18-24-14-15-36-30(24)42)29(41)33(45)37-21(3)4)39-32(44)28(17-22-10-12-25(35)13-11-22)40-34(46)47-19-23-8-6-5-7-9-23/h5-13,20-21,24,26-29,41H,14-19H2,1-4H3,(H,36,42)(H,37,45)(H,38,43)(H,39,44)(H,40,46)/t24-,26-,27-,28-,29+/m0/s1" 
WYR InChIKey         InChI                1.06  BQVFQZWCCRSJJV-MZCDCCSRSA-N                                                                                                                                                                                                                                                          
WYR SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)[C@H](Cc1ccc(F)cc1)NC(=O)OCc2ccccc2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)C(=O)NC(C)C"                                                                                                                                                                            
WYR SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)[CH](Cc1ccc(F)cc1)NC(=O)OCc2ccccc2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)C(=O)NC(C)C"                                                                                                                                                                                    
WYR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@H](C(=O)NC(C)C)O)NC(=O)[C@H](Cc2ccc(cc2)F)NC(=O)OCc3ccccc3"                                                                                                                                                                            
WYR SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(C(=O)NC(C)C)O)NC(=O)C(Cc2ccc(cc2)F)NC(=O)OCc3ccccc3"                                                                                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
WYR "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(benzyloxy)carbonyl]-4-fluoro-L-phenylalanyl-N-{(2S,3R)-3-hydroxy-4-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]-4-[(propan-2-yl)amino]butan-2-yl}-L-leucinamide"                                                                                                                   
WYR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(phenylmethyl) ~{N}-[(2~{S})-3-(4-fluorophenyl)-1-[[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S},3~{R})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-4-(propan-2-ylamino)butan-2-yl]amino]pentan-2-yl]amino]-1-oxidanylidene-propan-2-yl]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WYR "Create component" 2023-10-17 RCSB 
WYR "Initial release"  2024-02-14 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      WYR 
_pdbx_chem_comp_synonyms.name         GSK3487016A 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
