data_KPS
#

_chem_comp.id                                   KPS
_chem_comp.name                                 "pseudouridine 5'-phosphate, linear"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C9 H15 N2 O9 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "1-deoxy-1-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl)-5-O-phosphono-D-ribitol"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-08-16
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       326.197
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    KPS
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4GIL
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KPS  O3T    O3T    O  0  1  N  N  N  -2.960  -35.832  14.921  -6.208   0.579  -1.469  O3T    KPS   1  
KPS  P      P      P  0  1  N  N  N  -3.606  -36.370  13.669  -5.354  -0.007  -0.236  P      KPS   2  
KPS  O1P    O1P    O  0  1  N  N  N  -2.769  -36.218  12.422  -5.742   0.693   1.009  O1P    KPS   3  
KPS  O2P    O2P    O  0  1  N  N  N  -5.054  -35.985  13.498  -5.649  -1.582  -0.080  O2P    KPS   4  
KPS  "O5'"  "O5'"  O  0  1  N  N  N  -3.654  -37.959  13.912  -3.785   0.221  -0.514  "O5'"  KPS   5  
KPS  "C5'"  "C5'"  C  0  1  N  N  N  -4.534  -38.784  13.153  -2.772  -0.097   0.443  "C5'"  KPS   6  
KPS  "C4'"  "C4'"  C  0  1  N  N  R  -3.974  -40.200  13.098  -1.397   0.241  -0.139  "C4'"  KPS   7  
KPS  "O4'"  "O4'"  O  0  1  N  N  N  -2.550  -40.151  13.234  -1.299   1.652  -0.339  "O4'"  KPS   8  
KPS  "C3'"  "C3'"  C  0  1  N  N  S  -4.560  -41.059  14.211  -0.306  -0.213   0.832  "C3'"  KPS   9  
KPS  "O3'"  "O3'"  O  0  1  N  N  N  -5.641  -40.354  14.832  -0.405  -1.625   1.033  "O3'"  KPS  10  
KPS  "C2'"  "C2'"  C  0  1  N  N  S  -5.073  -42.388  13.669   1.068   0.125   0.251  "C2'"  KPS  11  
KPS  "O2'"  "O2'"  O  0  1  N  N  N  -5.440  -42.233  12.293   1.166   1.536   0.050  "O2'"  KPS  12  
KPS  "C1'"  "C1'"  C  0  1  N  N  N  -4.027  -43.491  13.794   2.159  -0.330   1.222  "C1'"  KPS  13  
KPS  C5     C5     C  0  1  N  N  N  -4.139  -44.462  12.623   3.512  -0.109   0.597  C5     KPS  14  
KPS  C6     C6     C  0  1  N  N  N  -4.675  -45.734  13.104   4.208   1.019   0.853  C6     KPS  15  
KPS  N1     N1     N  0  1  N  N  N  -4.015  -46.886  12.955   5.436   1.203   0.277  N1     KPS  16  
KPS  C2     C2     C  0  1  N  N  N  -2.812  -46.937  12.350   5.955   0.271  -0.542  C2     KPS  17  
KPS  O2     O2     O  0  1  N  N  N  -2.229  -48.035  12.231   7.048   0.455  -1.043  O2     KPS  18  
KPS  N3     N3     N  0  1  N  N  N  -2.233  -45.830  11.876   5.283  -0.863  -0.814  N3     KPS  19  
KPS  C4     C4     C  0  1  N  N  N  -2.815  -44.631  11.979   4.073  -1.085  -0.262  C4     KPS  20  
KPS  O4     O4     O  0  1  N  N  N  -2.229  -43.629  11.517   3.464  -2.111  -0.507  O4     KPS  21  
KPS  H1     H1     H  0  1  N  N  N  -2.105  -35.475  14.709  -7.164   0.476  -1.370  H1     KPS  22  
KPS  H2     H2     H  0  1  N  N  N  -5.203  -35.701  12.604  -5.418  -2.105  -0.861  H2     KPS  23  
KPS  H3     H3     H  0  1  N  N  N  -4.623  -38.384  12.132  -2.934   0.483   1.351  H3     KPS  24  
KPS  H4     H4     H  0  1  N  N  N  -5.526  -38.799  13.629  -2.815  -1.161   0.678  H4     KPS  25  
KPS  H5     H5     H  0  1  N  N  N  -4.243  -40.647  12.130  -1.271  -0.271  -1.093  H5     KPS  26  
KPS  H6     H6     H  0  1  N  N  N  -2.198  -41.033  13.200  -1.402   2.172   0.469  H6     KPS  27  
KPS  H7     H7     H  0  1  N  N  N  -3.772  -41.262  14.951  -0.433   0.299   1.786  H7     KPS  28  
KPS  H8     H8     H  0  1  N  N  N  -6.009  -40.887  15.527  -0.301  -2.145   0.224  H8     KPS  29  
KPS  H9     H9     H  0  1  N  N  N  -5.957  -42.682  14.254   1.194  -0.387  -0.703  H9     KPS  30  
KPS  H10    H10    H  0  1  N  N  N  -6.092  -41.546  12.214   1.063   2.056   0.859  H10    KPS  31  
KPS  H11    H11    H  0  1  N  N  N  -4.187  -44.038  14.735   2.087   0.246   2.145  H11    KPS  32  
KPS  H12    H12    H  0  1  N  N  N  -3.023  -43.041  13.797   2.029  -1.389   1.444  H12    KPS  33  
KPS  H14    H14    H  0  1  N  N  N  -5.636  -45.743  13.596   3.798   1.773   1.508  H14    KPS  34  
KPS  H15    H15    H  0  1  N  N  N  -1.340  -45.900  11.432   5.674  -1.527  -1.403  H15    KPS  35  
KPS  H13    H13    H  0  1  N  N  N  -4.424  -47.731  13.301   5.936   2.014   0.461  H13    KPS  36  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KPS  O4     C4     DOUB  N  N   1  
KPS  N3     C4     SING  N  N   2  
KPS  N3     C2     SING  N  N   3  
KPS  C4     C5     SING  N  N   4  
KPS  O2     C2     DOUB  N  N   5  
KPS  "O2'"  "C2'"  SING  N  N   6  
KPS  C2     N1     SING  N  N   7  
KPS  O1P    P      DOUB  N  N   8  
KPS  C5     C6     DOUB  N  N   9  
KPS  C5     "C1'"  SING  N  N  10  
KPS  N1     C6     SING  N  N  11  
KPS  "C4'"  "C5'"  SING  N  N  12  
KPS  "C4'"  "O4'"  SING  N  N  13  
KPS  "C4'"  "C3'"  SING  N  N  14  
KPS  "C5'"  "O5'"  SING  N  N  15  
KPS  O2P    P      SING  N  N  16  
KPS  "C2'"  "C1'"  SING  N  N  17  
KPS  "C2'"  "C3'"  SING  N  N  18  
KPS  P      "O5'"  SING  N  N  19  
KPS  P      O3T    SING  N  N  20  
KPS  "C3'"  "O3'"  SING  N  N  21  
KPS  O3T    H1     SING  N  N  22  
KPS  O2P    H2     SING  N  N  23  
KPS  "C5'"  H3     SING  N  N  24  
KPS  "C5'"  H4     SING  N  N  25  
KPS  "C4'"  H5     SING  N  N  26  
KPS  "O4'"  H6     SING  N  N  27  
KPS  "C3'"  H7     SING  N  N  28  
KPS  "O3'"  H8     SING  N  N  29  
KPS  "C2'"  H9     SING  N  N  30  
KPS  "O2'"  H10    SING  N  N  31  
KPS  "C1'"  H11    SING  N  N  32  
KPS  "C1'"  H12    SING  N  N  33  
KPS  C6     H14    SING  N  N  34  
KPS  N3     H15    SING  N  N  35  
KPS  N1     H13    SING  N  N  36  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KPS  SMILES            ACDLabs               12.01  "O=C1C(=CNC(=O)N1)CC(O)C(O)C(O)COP(=O)(O)O"  
KPS  InChI             InChI                 1.03   "InChI=1S/C9H15N2O9P/c12-5(1-4-2-10-9(16)11-8(4)15)7(14)6(13)3-20-21(17,18)19/h2,5-7,12-14H,1,3H2,(H2,17,18,19)(H2,10,11,15,16)/t5-,6+,7-/m0/s1"  
KPS  InChIKey          InChI                 1.03   GIMVKTFECLUQAU-XVMARJQXSA-N  
KPS  SMILES_CANONICAL  CACTVS                3.370  "O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H](O)CC1=CNC(=O)NC1=O"  
KPS  SMILES            CACTVS                3.370  "O[CH](CO[P](O)(O)=O)[CH](O)[CH](O)CC1=CNC(=O)NC1=O"  
KPS  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C1=C(C(=O)NC(=O)N1)C[C@@H]([C@@H]([C@@H](COP(=O)(O)O)O)O)O"  
KPS  SMILES            "OpenEye OEToolkits"  1.7.6  "C1=C(C(=O)NC(=O)N1)CC(C(C(COP(=O)(O)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
KPS  "SYSTEMATIC NAME"  ACDLabs               12.01  "1-deoxy-1-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl)-5-O-phosphono-D-ribitol"  
KPS  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "[(2R,3S,4S)-5-[2,4-bis(oxidanylidene)-1H-pyrimidin-5-yl]-2,3,4-tris(oxidanyl)pentyl] dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KPS  "Create component"  2012-08-16  RCSB  
KPS  "Modify name"       2012-09-12  RCSB  
KPS  "Initial release"   2012-10-26  RCSB  
KPS  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     KPS
_pdbx_chem_comp_synonyms.name        "1-deoxy-1-(2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5-yl)-5-O-phosphono-D-ribitol"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
