data_O3U
# 
_chem_comp.id                                    O3U 
_chem_comp.name                                  "N-[(1R)-1,5-dicyano-4-(methylsulfanyl)-3-azaspiro[5.5]undeca-2,4-dien-2-yl]acetamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H18 N4 O S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-16 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        302.395 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     O3U 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7GF7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
O3U N1  N1  N 0 1 N N N N N N 8.391  -3.862 21.837 -1.674 2.021  0.162  N1  O3U 1  
O3U N3  N2  N 0 1 N N N N N N 5.663  -5.177 20.104 0.830  0.606  3.152  N3  O3U 2  
O3U C4  C1  C 0 1 N N N N N N 5.478  -5.508 23.689 1.451  0.104  -0.190 C4  O3U 3  
O3U C5  C2  C 0 1 N N N N N N 4.508  -4.301 23.765 1.579  0.583  -1.636 C5  O3U 4  
O3U C6  C3  C 0 1 N N N N N N 3.111  -4.628 24.281 2.237  1.964  -1.659 C6  O3U 5  
O3U C7  C4  C 0 1 N N N N N N 2.496  -5.761 23.492 3.626  1.877  -1.024 C7  O3U 6  
O3U C8  C5  C 0 1 N N N N N N 3.356  -7.003 23.597 3.497  1.398  0.424  C8  O3U 7  
O3U C10 C6  C 0 1 N N R N N N 6.352  -4.962 22.565 0.584  1.086  0.601  C10 O3U 8  
O3U C13 C7  C 0 1 N N N N N N 9.049  -2.530 19.915 -3.867 3.097  -0.231 C13 O3U 9  
O3U C14 C8  C 0 1 N N N N N N 5.938  -5.093 21.213 0.723  0.815  2.041  C14 O3U 10 
O3U C11 C9  C 0 1 N N N N N N 7.613  -4.523 22.772 -0.858 0.923  0.197  C11 O3U 11 
O3U C12 C10 C 0 1 N N N N N N 7.965  -3.039 20.838 -2.968 1.888  -0.193 C12 O3U 12 
O3U O   O1  O 0 1 N N N N N N 6.823  -2.586 20.793 -3.408 0.796  -0.481 O   O3U 13 
O3U N2  N3  N 0 1 N N N N N N 8.192  -4.680 23.993 -1.342 -0.242 -0.119 N2  O3U 14 
O3U C1  C11 C 0 1 N N N N N N 7.574  -5.264 25.063 -0.576 -1.350 -0.146 C1  O3U 15 
O3U S   S1  S 0 1 N N N N N N 8.474  -5.336 26.567 -1.342 -2.937 -0.157 S   O3U 16 
O3U C   C12 C 0 1 N N N N N N 10.168 -5.520 26.002 -3.084 -2.446 -0.124 C   O3U 17 
O3U C2  C13 C 0 1 N N N N N N 6.304  -5.731 24.955 0.799  -1.257 -0.166 C2  O3U 18 
O3U C3  C14 C 0 1 N N N N N N 5.743  -6.505 26.002 1.603  -2.442 -0.165 C3  O3U 19 
O3U N   N4  N 0 1 N N N N N N 5.259  -7.147 26.820 2.240  -3.382 -0.164 N   O3U 20 
O3U C9  C15 C 0 1 N N N N N N 4.765  -6.744 23.080 2.838  0.017  0.447  C9  O3U 21 
O3U H1  H1  H 0 1 N N N N N N 9.379  -4.005 21.902 -1.323 2.894  0.397  H1  O3U 22 
O3U H2  H2  H 0 1 N N N N N N 4.951  -3.549 24.434 2.192  -0.121 -2.200 H2  O3U 23 
O3U H3  H3  H 0 1 N N N N N N 4.408  -3.879 22.754 0.589  0.645  -2.088 H3  O3U 24 
O3U H4  H4  H 0 1 N N N N N N 2.474  -3.736 24.186 2.330  2.306  -2.690 H4  O3U 25 
O3U H5  H5  H 0 1 N N N N N N 3.177  -4.921 25.339 1.624  2.668  -1.097 H5  O3U 26 
O3U H6  H6  H 0 1 N N N N N N 2.414  -5.465 22.436 4.240  1.173  -1.586 H6  O3U 27 
O3U H7  H7  H 0 1 N N N N N N 1.494  -5.979 23.891 4.096  2.861  -1.040 H7  O3U 28 
O3U H8  H8  H 0 1 N N N N N N 2.898  -7.807 23.003 4.487  1.336  0.876  H8  O3U 29 
O3U H9  H9  H 0 1 N N N N N N 3.412  -7.312 24.651 2.884  2.103  0.986  H9  O3U 30 
O3U H10 H10 H 0 1 N N N N N N 5.925  -3.952 22.655 0.906  2.106  0.391  H10 O3U 31 
O3U H11 H11 H 0 1 N N N N N N 8.637  -1.747 19.261 -3.299 3.981  0.057  H11 O3U 32 
O3U H12 H12 H 0 1 N N N N N N 9.873  -2.113 20.512 -4.257 3.228  -1.240 H12 O3U 33 
O3U H13 H13 H 0 1 N N N N N N 9.426  -3.360 19.300 -4.696 2.955  0.463  H13 O3U 34 
O3U H14 H14 H 0 1 N N N N N N 10.841 -5.577 26.871 -3.713 -3.336 -0.127 H14 O3U 35 
O3U H15 H15 H 0 1 N N N N N N 10.258 -6.441 25.407 -3.280 -1.865 0.777  H15 O3U 36 
O3U H16 H16 H 0 1 N N N N N N 10.444 -4.654 25.382 -3.307 -1.840 -1.002 H16 O3U 37 
O3U H17 H17 H 0 1 N N N N N N 5.376  -7.632 23.300 2.744  -0.323 1.478  H17 O3U 38 
O3U H18 H18 H 0 1 N N N N N N 4.706  -6.600 21.991 3.452  -0.688 -0.114 H18 O3U 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
O3U C13 C12 SING N N 1  
O3U N3  C14 TRIP N N 2  
O3U O   C12 DOUB N N 3  
O3U C12 N1  SING N N 4  
O3U C14 C10 SING N N 5  
O3U N1  C11 SING N N 6  
O3U C10 C11 SING N N 7  
O3U C10 C4  SING N N 8  
O3U C11 N2  DOUB N N 9  
O3U C9  C8  SING N N 10 
O3U C9  C4  SING N N 11 
O3U C7  C8  SING N N 12 
O3U C7  C6  SING N N 13 
O3U C4  C5  SING N N 14 
O3U C4  C2  SING N N 15 
O3U C5  C6  SING N N 16 
O3U N2  C1  SING N N 17 
O3U C2  C1  DOUB N N 18 
O3U C2  C3  SING N N 19 
O3U C1  S   SING N N 20 
O3U C   S   SING N N 21 
O3U C3  N   TRIP N N 22 
O3U N1  H1  SING N N 23 
O3U C5  H2  SING N N 24 
O3U C5  H3  SING N N 25 
O3U C6  H4  SING N N 26 
O3U C6  H5  SING N N 27 
O3U C7  H6  SING N N 28 
O3U C7  H7  SING N N 29 
O3U C8  H8  SING N N 30 
O3U C8  H9  SING N N 31 
O3U C10 H10 SING N N 32 
O3U C13 H11 SING N N 33 
O3U C13 H12 SING N N 34 
O3U C13 H13 SING N N 35 
O3U C   H14 SING N N 36 
O3U C   H15 SING N N 37 
O3U C   H16 SING N N 38 
O3U C9  H17 SING N N 39 
O3U C9  H18 SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
O3U SMILES           ACDLabs              12.01 "CC(=O)NC1=NC(SC)=C(C#N)C2(CCCCC2)C1C#N"                                                                                    
O3U InChI            InChI                1.06  "InChI=1S/C15H18N4OS/c1-10(20)18-13-11(8-16)15(6-4-3-5-7-15)12(9-17)14(19-13)21-2/h11H,3-7H2,1-2H3,(H,18,19,20)/t11-/m1/s1" 
O3U InChIKey         InChI                1.06  NZKPFLQQMFCJHQ-LLVKDONJSA-N                                                                                                 
O3U SMILES_CANONICAL CACTVS               3.385 "CSC1=C(C#N)C2(CCCCC2)[C@H](C#N)C(=N1)NC(C)=O"                                                                              
O3U SMILES           CACTVS               3.385 "CSC1=C(C#N)C2(CCCCC2)[CH](C#N)C(=N1)NC(C)=O"                                                                               
O3U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)NC1=NC(=C(C2(C1C#N)CCCCC2)C#N)SC"                                                                                    
O3U SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)NC1=NC(=C(C2(C1C#N)CCCCC2)C#N)SC"                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
O3U "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(1R)-1,5-dicyano-4-(methylsulfanyl)-3-azaspiro[5.5]undeca-2,4-dien-2-yl]acetamide" 
O3U "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-(1,5-dicyano-4-methylsulfanyl-3-azaspiro[5.5]undeca-2,4-dien-2-yl)ethanamide"    
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
O3U "Create component" 2023-08-16 RCSB 
O3U "Initial release"  2023-11-08 RCSB 
# 
