data_9EV
# 
_chem_comp.id                                    9EV 
_chem_comp.name                                  "6-[(2R)-2-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}-5-oxo-1,3-oxazolidin-3-yl]-L-norleucine" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C16 H24 N3 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-05-03 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        433.350 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9EV 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5VNX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9EV C13 C13 C 0 1 N N R N N N 60.485 46.880 21.355 -0.540 0.357  -0.198 C13 9EV 1  
9EV C15 C15 C 0 1 N N N N N N 62.553 47.154 20.598 -0.541 2.319  0.950  C15 9EV 2  
9EV C17 C17 C 0 1 N N N N N N 62.616 45.990 21.471 0.630  1.510  1.475  C17 9EV 3  
9EV C20 C20 C 0 1 N N N N N N 61.106 44.084 23.792 3.190  0.354  0.339  C20 9EV 4  
9EV C21 C21 C 0 1 N N N N N N 61.839 42.749 23.460 4.358  0.568  -0.626 C21 9EV 5  
9EV C22 C22 C 0 1 N N N N N N 62.014 41.679 24.603 5.678  0.338  0.113  C22 9EV 6  
9EV C28 C28 C 0 1 Y N N N N N 58.797 47.823 23.063 -0.491 -2.125 0.237  C28 9EV 7  
9EV C01 C01 C 0 1 N N N N N N 57.103 48.643 24.840 -0.378 -4.587 0.675  C01 9EV 8  
9EV C02 C02 C 0 1 Y N N N N N 57.474 48.065 23.444 -1.163 -3.323 0.434  C02 9EV 9  
9EV C04 C04 C 0 1 Y N N N N N 56.729 47.294 21.387 -3.208 -2.287 0.207  C04 9EV 10 
9EV C05 C05 C 0 1 Y N N N N N 58.017 47.038 20.960 -2.611 -1.056 0.012  C05 9EV 11 
9EV C06 C06 C 0 1 N N N N N N 58.285 46.520 19.516 -3.454 0.171  -0.223 C06 9EV 12 
9EV C12 C12 C 0 1 Y N N N N N 59.084 47.355 21.769 -1.228 -0.965 0.021  C12 9EV 13 
9EV C19 C19 C 0 1 N N N N N N 60.633 44.748 22.456 1.870  0.584  -0.400 C19 9EV 14 
9EV CA  C23 C 0 1 N N S Y N N 62.901 40.540 24.018 6.846  0.551  -0.852 C23 9EV 15 
9EV C   C1  C 0 1 N N N Y N Y 63.282 39.339 24.901 8.146  0.445  -0.098 C1  9EV 16 
9EV N03 N03 N 0 1 Y N N N N N 56.478 47.791 22.610 -2.480 -3.367 0.414  N03 9EV 17 
9EV N18 N18 N 0 1 N N N N N N 61.372 46.021 22.213 0.748  0.379  0.527  N18 9EV 18 
9EV N   N24 N 0 1 N N N Y Y N 62.249 39.883 22.844 6.806  -0.473 -1.905 N24 9EV 19 
9EV O07 O07 O 0 1 N N N N N N 58.160 45.152 19.516 -4.836 -0.189 -0.200 O07 9EV 20 
9EV O09 O09 O 0 1 N N N N N N 58.715 45.125 16.978 -5.880 1.981  0.557  O09 9EV 21 
9EV O10 O10 O 0 1 N N N N N N 60.541 44.781 18.584 -5.948 1.467  -1.913 O10 9EV 22 
9EV O11 O11 O 0 1 N N N N N N 58.760 43.008 18.404 -7.444 0.149  -0.199 O11 9EV 23 
9EV O14 O14 O 0 1 N N N N N N 61.244 47.775 20.547 -1.357 1.435  0.340  O14 9EV 24 
9EV O16 O16 O 0 1 N N N N N N 63.559 47.517 20.031 -0.708 3.511  1.056  O16 9EV 25 
9EV O   O27 O 0 1 N N N Y N Y 64.200 38.538 24.563 8.787  -0.578 -0.139 O27 9EV 26 
9EV O29 O29 O 0 1 N N N N N N 59.857 48.137 23.895 0.867  -2.084 0.259  O29 9EV 27 
9EV P08 P08 P 0 1 N N N N N N 59.080 44.501 18.332 -6.024 0.876  -0.417 P08 9EV 28 
9EV H1  H1  H 0 1 N N N N N N 60.200 46.138 20.595 -0.369 0.515  -1.263 H1  9EV 29 
9EV H18 H2  H 0 1 N N N N N N 62.693 45.065 20.880 1.540  2.109  1.470  H2  9EV 30 
9EV H3  H3  H 0 1 N N N N N N 63.476 46.062 22.153 0.419  1.144  2.480  H3  9EV 31 
9EV H4  H4  H 0 1 N N N N N N 61.794 44.762 24.318 3.218  -0.665 0.723  H4  9EV 32 
9EV H5  H5  H 0 1 N N N N N N 60.234 43.878 24.431 3.270  1.057  1.168  H5  9EV 33 
9EV H6  H6  H 0 1 N N N N N N 61.279 42.265 22.646 4.278  -0.135 -1.455 H6  9EV 34 
9EV H7  H7  H 0 1 N N N N N N 62.847 43.012 23.105 4.330  1.587  -1.010 H7  9EV 35 
9EV H8  H8  H 0 1 N N N N N N 62.507 42.133 25.475 5.758  1.041  0.942  H8  9EV 36 
9EV H9  H9  H 0 1 N N N N N N 61.034 41.280 24.902 5.706  -0.682 0.497  H9  9EV 37 
9EV H10 H10 H 0 1 N N N N N N 56.010 48.739 24.919 -0.211 -4.712 1.745  H10 9EV 38 
9EV H11 H11 H 0 1 N N N N N N 57.470 47.966 25.626 -0.937 -5.440 0.292  H11 9EV 39 
9EV H12 H12 H 0 1 N N N N N N 57.567 49.633 24.962 0.582  -4.522 0.163  H12 9EV 40 
9EV H13 H13 H 0 1 N N N N N N 55.903 47.090 20.722 -4.285 -2.365 0.197  H13 9EV 41 
9EV H14 H14 H 0 1 N N N N N N 59.302 46.800 19.204 -3.256 0.903  0.561  H14 9EV 42 
9EV H15 H15 H 0 1 N N N N N N 57.554 46.960 18.822 -3.206 0.602  -1.193 H15 9EV 43 
9EV H16 H16 H 0 1 N N N N N N 59.556 44.962 22.520 1.842  1.604  -0.784 H16 9EV 44 
9EV H17 H17 H 0 1 N N N N N N 60.821 44.056 21.622 1.790  -0.119 -1.229 H17 9EV 45 
9EV HA  H18 H 0 1 N N N Y N N 63.837 41.003 23.671 6.768  1.540  -1.304 H18 9EV 46 
9EV H   H21 H 0 1 N N N Y Y N 62.843 39.159 22.494 6.877  -1.399 -1.510 H21 9EV 47 
9EV H2  H22 H 0 1 N Y N Y Y N 61.374 39.489 23.126 5.972  -0.382 -2.466 H22 9EV 48 
9EV H24 H24 H 0 1 N N N N N N 60.900 45.274 17.856 -6.035 0.798  -2.605 H24 9EV 49 
9EV H25 H25 H 0 1 N N N N N N 58.383 42.724 17.579 -8.206 0.733  -0.315 H25 9EV 50 
9EV H26 H26 H 0 1 N N N N N N 59.524 48.438 24.732 1.279  -2.227 -0.604 H26 9EV 51 
9EV OXT OXT O 0 1 N Y N Y N Y ?      ?      ?      8.592  1.488  0.620  O1  9EV 52 
9EV HXT HXT H 0 1 N Y N Y N Y ?      ?      ?      9.431  1.373  1.087  H19 9EV 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9EV O09 P08 DOUB N N 1  
9EV P08 O11 SING N N 2  
9EV P08 O10 SING N N 3  
9EV P08 O07 SING N N 4  
9EV O07 C06 SING N N 5  
9EV C06 C05 SING N N 6  
9EV O16 C15 DOUB N N 7  
9EV O14 C15 SING N N 8  
9EV O14 C13 SING N N 9  
9EV C15 C17 SING N N 10 
9EV C05 C04 DOUB Y N 11 
9EV C05 C12 SING Y N 12 
9EV C13 C12 SING N N 13 
9EV C13 N18 SING N N 14 
9EV C04 N03 SING Y N 15 
9EV C17 N18 SING N N 16 
9EV C12 C28 DOUB Y N 17 
9EV N18 C19 SING N N 18 
9EV C19 C20 SING N N 19 
9EV N03 C02 DOUB Y N 20 
9EV N   CA  SING N N 21 
9EV C28 C02 SING Y N 22 
9EV C28 O29 SING N N 23 
9EV C02 C01 SING N N 24 
9EV C21 C20 SING N N 25 
9EV C21 C22 SING N N 26 
9EV CA  C22 SING N N 27 
9EV CA  C   SING N N 28 
9EV O   C   DOUB N N 29 
9EV C13 H1  SING N N 30 
9EV C17 H18 SING N N 31 
9EV C17 H3  SING N N 32 
9EV C20 H4  SING N N 33 
9EV C20 H5  SING N N 34 
9EV C21 H6  SING N N 35 
9EV C21 H7  SING N N 36 
9EV C22 H8  SING N N 37 
9EV C22 H9  SING N N 38 
9EV C01 H10 SING N N 39 
9EV C01 H11 SING N N 40 
9EV C01 H12 SING N N 41 
9EV C04 H13 SING N N 42 
9EV C06 H14 SING N N 43 
9EV C06 H15 SING N N 44 
9EV C19 H16 SING N N 45 
9EV C19 H17 SING N N 46 
9EV CA  HA  SING N N 47 
9EV N   H   SING N N 48 
9EV N   H2  SING N N 49 
9EV O10 H24 SING N N 50 
9EV O11 H25 SING N N 51 
9EV O29 H26 SING N N 52 
9EV C   OXT SING N N 53 
9EV OXT HXT SING N N 54 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9EV SMILES           ACDLabs              12.01 "C2(c1c(c(C)ncc1COP(=O)(O)O)O)N(CC(O2)=O)CCCCC(C(O)=O)N"                                                                                                                       
9EV InChI            InChI                1.03  "InChI=1S/C16H24N3O9P/c1-9-14(21)13(10(6-18-9)8-27-29(24,25)26)15-19(7-12(20)28-15)5-3-2-4-11(17)16(22)23/h6,11,15,21H,2-5,7-8,17H2,1H3,(H,22,23)(H2,24,25,26)/t11-,15+/m0/s1" 
9EV InChIKey         InChI                1.03  SBAJHYHDSSMXGA-XHDPSFHLSA-N                                                                                                                                                    
9EV SMILES_CANONICAL CACTVS               3.385 "Cc1ncc(CO[P](O)(O)=O)c([C@H]2OC(=O)CN2CCCC[C@H](N)C(O)=O)c1O"                                                                                                                 
9EV SMILES           CACTVS               3.385 "Cc1ncc(CO[P](O)(O)=O)c([CH]2OC(=O)CN2CCCC[CH](N)C(O)=O)c1O"                                                                                                                   
9EV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1c(c(c(cn1)COP(=O)(O)O)[C@@H]2N(CC(=O)O2)CCCC[C@@H](C(=O)O)N)O"                                                                                                             
9EV SMILES           "OpenEye OEToolkits" 2.0.6 "Cc1c(c(c(cn1)COP(=O)(O)O)C2N(CC(=O)O2)CCCCC(C(=O)O)N)O"                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9EV "SYSTEMATIC NAME" ACDLabs              12.01 "6-[(2R)-2-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}-5-oxo-1,3-oxazolidin-3-yl]-L-norleucine"                              
9EV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-2-azanyl-6-[(2~{R})-2-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]-5-oxidanylidene-1,3-oxazolidin-3-yl]hexanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9EV "Create component" 2017-05-03 RCSB 
9EV "Modify formula"   2017-05-03 RCSB 
9EV "Modify name"      2017-05-03 RCSB 
9EV "Initial release"  2017-05-17 RCSB 
9EV "Modify backbone"  2023-11-03 PDBE 
# 
