data_9SV
#

_chem_comp.id                                   9SV
_chem_comp.name                                 "2-(4-methylpiperazin-1-yl)-3-(phenylsulfanyl)naphthalene-1,4-dione"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H20 N2 O2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "BOUND FORM"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-06-07
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       364.461
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    9SV
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5W1Y
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9SV  C1   C1   C  0  1  N  N  N  31.761   4.535  -3.754   4.107  -0.376  -1.019  C1   9SV   1  
9SV  C2   C2   C  0  1  N  N  N  31.079   4.457  -2.428   2.639  -0.783  -1.184  C2   9SV   2  
9SV  C3   C3   C  0  1  N  N  N  32.910   5.871  -1.506   2.361  -0.477   1.306  C3   9SV   3  
9SV  C4   C4   C  0  1  N  N  N  33.483   5.915  -2.888   3.840  -0.082   1.373  C4   9SV   4  
9SV  C6   C5   C  0  1  N  N  N  29.425   6.165  -0.370  -0.377  -0.084  -0.840  C6   9SV   5  
9SV  C13  C6   C  0  1  Y  N  N  27.987   9.562   0.588  -2.991   2.660  -0.395  C13  9SV   6  
9SV  C14  C7   C  0  1  N  N  N  30.796   8.007  -1.368   0.671   1.934   0.094  C14  9SV   7  
9SV  O1   O1   O  0  1  N  N  N  31.680   8.365  -2.099   1.698   2.531   0.358  O1   9SV   8  
9SV  C5   C8   C  0  1  N  N  N  30.548   6.515  -1.076   0.713   0.512  -0.279  C5   9SV   9  
9SV  N1   N1   N  0  1  N  N  N  31.467   5.585  -1.573   1.872  -0.229  -0.058  N1   9SV  10  
9SV  N    N2   N  0  1  N  N  N  33.210   4.670  -3.586   4.578  -0.781   0.312  N    9SV  11  
9SV  C    C9   C  0  1  N  N  N  33.872   4.649  -4.893   6.024  -0.565   0.447  C    9SV  12  
9SV  C9   C10  C  0  1  Y  N  N  29.921   8.987  -0.740  -0.634   2.632   0.146  C9   9SV  13  
9SV  C10  C11  C  0  1  Y  N  N  30.200  10.344  -0.882  -0.760   3.873   0.754  C10  9SV  14  
9SV  C11  C12  C  0  1  Y  N  N  29.375  11.288  -0.306  -1.996   4.501   0.785  C11  9SV  15  
9SV  C12  C13  C  0  1  Y  N  N  28.269  10.898   0.410  -3.102   3.901   0.216  C12  9SV  16  
9SV  C8   C14  C  0  1  Y  N  N  28.807   8.586   0.015  -1.764   2.017  -0.429  C8   9SV  17  
9SV  C7   C15  C  0  1  N  N  N  28.497   7.143   0.182  -1.609   0.694  -1.077  C7   9SV  18  
9SV  O    O2   O  0  1  N  N  N  27.455   6.770   0.759  -2.485   0.255  -1.795  O    9SV  19  
9SV  H1   H1   H  0  1  N  N  N  31.379   5.407  -4.305   4.709  -0.869  -1.783  H1   9SV  20  
9SV  H2   H2   H  0  1  N  N  N  31.548   3.619  -4.324   4.199   0.705  -1.125  H2   9SV  21  
9SV  H3   H3   H  0  1  N  N  N  29.990   4.479  -2.581   2.252  -0.385  -2.122  H3   9SV  22  
9SV  H4   H4   H  0  1  N  N  N  31.361   3.516  -1.933   2.558  -1.870  -1.183  H4   9SV  23  
9SV  H5   H5   H  0  1  N  N  N  33.412   5.082  -0.927   2.253  -1.535   1.547  H5   9SV  24  
9SV  H6   H6   H  0  1  N  N  N  33.067   6.842  -1.014   1.790   0.121   2.017  H6   9SV  25  
9SV  H7   H7   H  0  1  N  N  N  34.571   6.065  -2.825   3.936   0.994   1.234  H7   9SV  26  
9SV  H8   H8   H  0  1  N  N  N  33.029   6.749  -3.443   4.247  -0.362   2.345  H8   9SV  27  
9SV  H10  H10  H  0  1  N  N  N  27.128   9.267   1.173  -3.859   2.195  -0.838  H10  9SV  28  
9SV  H12  H12  H  0  1  N  N  N  34.959   4.751  -4.756   6.249   0.492   0.303  H12  9SV  29  
9SV  H13  H13  H  0  1  N  N  N  33.654   3.697  -5.399   6.346  -0.873   1.442  H13  9SV  30  
9SV  H14  H14  H  0  1  N  N  N  33.500   5.483  -5.506   6.552  -1.154  -0.303  H14  9SV  31  
9SV  H15  H15  H  0  1  N  N  N  31.066  10.659  -1.445   0.101   4.347   1.201  H15  9SV  32  
9SV  H16  H16  H  0  1  N  N  N  29.600  12.338  -0.418  -2.095   5.467   1.259  H16  9SV  33  
9SV  H17  H17  H  0  1  N  N  N  27.616  11.645   0.836  -4.059   4.400   0.247  H17  9SV  34  
9SV  S1   S1   S  0  1  N  Y  N       ?       ?       ?  -0.314  -1.786  -1.289  S1   9SV  35  
9SV  C16  C16  C  0  1  Y  Y  N       ?       ?       ?  -1.496  -2.445  -0.161  C16  9SV  36  
9SV  C15  C21  C  0  1  Y  Y  N       ?       ?       ?  -1.882  -3.778  -0.254  C15  9SV  37  
9SV  C17  C17  C  0  1  Y  Y  N       ?       ?       ?  -2.808  -4.290   0.632  C17  9SV  38  
9SV  C18  C18  C  0  1  Y  Y  N       ?       ?       ?  -3.353  -3.479   1.611  C18  9SV  39  
9SV  C19  C19  C  0  1  Y  Y  N       ?       ?       ?  -2.973  -2.153   1.707  C19  9SV  40  
9SV  C20  C20  C  0  1  Y  Y  N       ?       ?       ?  -2.042  -1.635   0.828  C20  9SV  41  
9SV  H9   H9   H  0  1  N  Y  N       ?       ?       ?  -1.457  -4.411  -1.018  H9   9SV  42  
9SV  H11  H11  H  0  1  N  Y  N       ?       ?       ?  -3.108  -5.325   0.561  H11  9SV  43  
9SV  H18  H18  H  0  1  N  Y  N       ?       ?       ?  -4.078  -3.883   2.303  H18  9SV  44  
9SV  H19  H19  H  0  1  N  Y  N       ?       ?       ?  -3.401  -1.523   2.473  H19  9SV  45  
9SV  H20  H20  H  0  1  N  Y  N       ?       ?       ?  -1.745  -0.599   0.904  H20  9SV  46  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9SV  C    N    SING  N  N   1  
9SV  C1   N    SING  N  N   2  
9SV  C1   C2   SING  N  N   3  
9SV  N    C4   SING  N  N   4  
9SV  C4   C3   SING  N  N   5  
9SV  C2   N1   SING  N  N   6  
9SV  O1   C14  DOUB  N  N   7  
9SV  N1   C3   SING  N  N   8  
9SV  N1   C5   SING  N  N   9  
9SV  C14  C5   SING  N  N  10  
9SV  C14  C9   SING  N  N  11  
9SV  C5   C6   DOUB  N  N  12  
9SV  C10  C9   DOUB  Y  N  13  
9SV  C10  C11  SING  Y  N  14  
9SV  C9   C8   SING  Y  N  15  
9SV  C6   C7   SING  N  N  16  
9SV  C11  C12  DOUB  Y  N  17  
9SV  C8   C7   SING  N  N  18  
9SV  C8   C13  DOUB  Y  N  19  
9SV  C7   O    DOUB  N  N  20  
9SV  C12  C13  SING  Y  N  21  
9SV  C1   H1   SING  N  N  22  
9SV  C1   H2   SING  N  N  23  
9SV  C2   H3   SING  N  N  24  
9SV  C2   H4   SING  N  N  25  
9SV  C3   H5   SING  N  N  26  
9SV  C3   H6   SING  N  N  27  
9SV  C4   H7   SING  N  N  28  
9SV  C4   H8   SING  N  N  29  
9SV  C13  H10  SING  N  N  30  
9SV  C    H12  SING  N  N  31  
9SV  C    H13  SING  N  N  32  
9SV  C    H14  SING  N  N  33  
9SV  C10  H15  SING  N  N  34  
9SV  C11  H16  SING  N  N  35  
9SV  C12  H17  SING  N  N  36  
9SV  C6   S1   SING  N  N  37  
9SV  S1   C16  SING  N  N  38  
9SV  C16  C15  SING  Y  N  39  
9SV  C15  C17  DOUB  Y  N  40  
9SV  C17  C18  SING  Y  N  41  
9SV  C18  C19  DOUB  Y  N  42  
9SV  C19  C20  SING  Y  N  43  
9SV  C20  C16  DOUB  Y  N  44  
9SV  C15  H9   SING  N  N  45  
9SV  C17  H11  SING  N  N  46  
9SV  C18  H18  SING  N  N  47  
9SV  C19  H19  SING  N  N  48  
9SV  C20  H20  SING  N  N  49  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9SV  SMILES            ACDLabs               12.01  "C1N(CCN(C1)C2=C(C(c3ccccc3C2=O)=O)Sc4ccccc4)C"  
9SV  InChI             InChI                 1.03   "InChI=1S/C21H20N2O2S/c1-22-11-13-23(14-12-22)18-19(24)16-9-5-6-10-17(16)20(25)21(18)26-15-7-3-2-4-8-15/h2-10H,11-14H2,1H3"  
9SV  InChIKey          InChI                 1.03   MJTBKNZEOWNOFN-UHFFFAOYSA-N  
9SV  SMILES_CANONICAL  CACTVS                3.385  "CN1CCN(CC1)C2=C(Sc3ccccc3)C(=O)c4ccccc4C2=O"  
9SV  SMILES            CACTVS                3.385  "CN1CCN(CC1)C2=C(Sc3ccccc3)C(=O)c4ccccc4C2=O"  
9SV  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CN1CCN(CC1)C2=C(C(=O)c3ccccc3C2=O)Sc4ccccc4"  
9SV  SMILES            "OpenEye OEToolkits"  2.0.6  "CN1CCN(CC1)C2=C(C(=O)c3ccccc3C2=O)Sc4ccccc4"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9SV  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-(4-methylpiperazin-1-yl)-3-(phenylsulfanyl)naphthalene-1,4-dione"  
9SV  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "2-(4-methylpiperazin-1-yl)-3-phenylsulfanyl-naphthalene-1,4-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9SV  "Create component"    2017-06-07  RCSB  
9SV  "Other modification"  2017-06-14  RCSB  
9SV  "Initial release"     2017-06-21  RCSB  
9SV  "Modify synonyms"     2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     9SV
_pdbx_chem_comp_synonyms.name        "BOUND FORM"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
