data_YRV
# 
_chem_comp.id                                    YRV 
_chem_comp.name                                  "S-[(3-methylphenyl)methyl]-L-cysteine" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C11 H15 N O2 S" 
_chem_comp.mon_nstd_parent_comp_id               CYS 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-03-29 
_chem_comp.pdbx_modified_date                    2024-04-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        225.307 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YRV 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7M5N 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YRV CA  C1  C 0 1 N N R N N N -22.274 39.743 0.124  3.120  -0.106 -0.584 C22 YRV 1  
YRV C   C2  C 0 1 N N N N N N -20.821 39.355 -0.108 4.472  0.018  0.071  C23 YRV 2  
YRV C93 C3  C 0 1 N N N N N N -23.836 34.425 2.181  -4.953 -2.024 0.246  C93 YRV 3  
YRV CB  C4  C 0 1 N N N N N N -23.075 39.184 -1.034 2.030  0.261  0.424  CA2 YRV 4  
YRV CA4 C5  C 0 1 N N N N N N -25.458 37.579 -1.480 -0.739 0.579  0.965  CA4 YRV 5  
YRV CA5 C6  C 0 1 Y N N N N N -25.680 36.366 -0.563 -2.157 0.504  0.459  CA5 YRV 6  
YRV CA6 C7  C 0 1 Y N N N N N -26.884 35.675 -0.610 -2.742 1.612  -0.125 CA6 YRV 7  
YRV CA7 C8  C 0 1 Y N N N N N -27.086 34.580 0.219  -4.042 1.543  -0.589 CA7 YRV 8  
YRV CA8 C9  C 0 1 Y N N N N N -26.097 34.198 1.111  -4.758 0.366  -0.469 CA8 YRV 9  
YRV CA9 C10 C 0 1 Y N N N N N -24.896 34.889 1.170  -4.172 -0.742 0.114  CA9 YRV 10 
YRV CAA C11 C 0 1 Y N N N N N -24.693 35.988 0.340  -2.871 -0.674 0.575  CAA YRV 11 
YRV N   N1  N 0 1 N N N N N N -22.346 41.198 0.158  2.921  -1.489 -1.039 N21 YRV 12 
YRV O   O1  O 0 1 N N N N N N -20.199 39.899 -0.955 5.039  -0.969 0.478  OA1 YRV 13 
YRV SG  S1  S 0 1 N N N N N N -24.820 39.008 -0.546 0.403  0.112  -0.364 SA3 YRV 14 
YRV HA  H1  H 0 1 N N N N N N -22.630 39.311 1.071  3.067  0.569  -1.438 H1  YRV 15 
YRV H3  H3  H 0 1 N N N N N N -23.990 34.943 3.139  -4.797 -2.637 -0.642 H3  YRV 16 
YRV H4  H4  H 0 1 N N N N N N -23.925 33.339 2.333  -4.612 -2.569 1.126  H4  YRV 17 
YRV H5  H5  H 0 1 N N N N N N -22.833 34.660 1.795  -6.013 -1.796 0.348  H5  YRV 18 
YRV HB2 H6  H 0 1 N N N N N N -22.673 38.199 -1.315 2.082  -0.414 1.278  H6  YRV 19 
YRV HB3 H7  H 0 1 N N N N N N -23.003 39.868 -1.892 2.177  1.286  0.762  H7  YRV 20 
YRV H8  H8  H 0 1 N N N N N N -24.733 37.309 -2.262 -0.523 1.597  1.290  H8  YRV 21 
YRV H9  H9  H 0 1 N N N N N N -26.415 37.855 -1.947 -0.617 -0.104 1.806  H9  YRV 22 
YRV H10 H10 H 0 1 N N N N N N -27.662 35.989 -1.290 -2.183 2.531  -0.219 H10 YRV 23 
YRV H11 H11 H 0 1 N N N N N N -28.012 34.027 0.169  -4.499 2.409  -1.045 H11 YRV 24 
YRV H12 H12 H 0 1 N N N N N N -26.263 33.355 1.766  -5.774 0.313  -0.831 H12 YRV 25 
YRV H13 H13 H 0 1 N N N N N N -23.770 36.546 0.398  -2.413 -1.541 1.027  H13 YRV 26 
YRV H   H14 H 0 1 N N N N N N -21.810 41.541 0.930  2.966  -2.134 -0.265 H14 YRV 27 
YRV H2  H15 H 0 1 N N N N N N -21.978 41.570 -0.694 2.050  -1.583 -1.539 H15 YRV 28 
YRV OXT O2  O 0 1 N Y N N N N -20.192 38.304 0.706  5.046  1.224  0.203  O1  YRV 29 
YRV HXT H2  H 0 1 N Y N N N N -19.292 38.183 0.428  5.913  1.253  0.629  H2  YRV 30 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YRV CA4 CA5 SING N N 1  
YRV CA4 SG  SING N N 2  
YRV CB  SG  SING N N 3  
YRV CB  CA  SING N N 4  
YRV O   C   DOUB N N 5  
YRV CA6 CA5 DOUB Y N 6  
YRV CA6 CA7 SING Y N 7  
YRV CA5 CAA SING Y N 8  
YRV C   CA  SING N N 9  
YRV CA  N   SING N N 10 
YRV CA7 CA8 DOUB Y N 11 
YRV CAA CA9 DOUB Y N 12 
YRV CA8 CA9 SING Y N 13 
YRV CA9 C93 SING N N 14 
YRV CA  HA  SING N N 15 
YRV C93 H3  SING N N 16 
YRV C93 H4  SING N N 17 
YRV C93 H5  SING N N 18 
YRV CB  HB2 SING N N 19 
YRV CB  HB3 SING N N 20 
YRV CA4 H8  SING N N 21 
YRV CA4 H9  SING N N 22 
YRV CA6 H10 SING N N 23 
YRV CA7 H11 SING N N 24 
YRV CA8 H12 SING N N 25 
YRV CAA H13 SING N N 26 
YRV N   H   SING N N 27 
YRV N   H2  SING N N 28 
YRV C   OXT SING N N 29 
YRV OXT HXT SING N N 30 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YRV SMILES           ACDLabs              12.01 "O=C(O)C(N)CSCc1cccc(C)c1"                                                                              
YRV InChI            InChI                1.03  "InChI=1S/C11H15NO2S/c1-8-3-2-4-9(5-8)6-15-7-10(12)11(13)14/h2-5,10H,6-7,12H2,1H3,(H,13,14)/t10-/m0/s1" 
YRV InChIKey         InChI                1.03  ZQJYENZJJPWXJK-JTQLQIEISA-N                                                                             
YRV SMILES_CANONICAL CACTVS               3.385 "Cc1cccc(CSC[C@H](N)C(O)=O)c1"                                                                          
YRV SMILES           CACTVS               3.385 "Cc1cccc(CSC[CH](N)C(O)=O)c1"                                                                           
YRV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cccc(c1)CSC[C@@H](C(=O)O)N"                                                                         
YRV SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cccc(c1)CSCC(C(=O)O)N"                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YRV "SYSTEMATIC NAME" ACDLabs              12.01 "S-[(3-methylphenyl)methyl]-L-cysteine"                             
YRV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-2-azanyl-3-[(3-methylphenyl)methylsulfanyl]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YRV "Create component" 2021-03-29 RCSB 
YRV "Initial release"  2024-04-24 RCSB 
# 
