data_Z4W
#

_chem_comp.id                                   Z4W
_chem_comp.name                                 beta-D-lyxopyranose
_chem_comp.type                                 "D-saccharide, beta linking"
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C5 H10 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "beta-D-lyxose; D-lyxose; lyxose"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-12-18
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       150.130
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Z4W
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1XNK
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  Z4W  beta-D-lyxose  PDB  ?  
2  Z4W  D-lyxose       PDB  ?  
3  Z4W  lyxose         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Z4W  C1   C1   C  0  1  N  N  R  3.689   0.348   -8.888   1.473   0.298  -0.538  C1   Z4W   1  
Z4W  C2   C2   C  0  1  N  N  S  4.130   0.035  -10.324   0.632  -0.957  -0.288  C2   Z4W   2  
Z4W  C3   C3   C  0  1  N  N  S  4.796   1.274  -10.933  -0.841  -0.639  -0.564  C3   Z4W   3  
Z4W  C4   C4   C  0  1  N  N  R  3.887   2.499  -10.802  -1.272   0.535   0.320  C4   Z4W   4  
Z4W  C5   C5   C  0  1  N  N  N  3.411   2.660   -9.362  -0.358   1.732   0.047  C5   Z4W   5  
Z4W  O1   O1   O  0  1  N  Y  N  3.045  -0.845   -8.246   2.841   0.024  -0.228  O1   Z4W   6  
Z4W  O2   O2   O  0  1  N  N  N  2.980  -0.306  -11.103   0.785  -1.372   1.071  O2   Z4W   7  
Z4W  O3   O3   O  0  1  N  N  N  5.088   1.025  -12.304  -1.642  -1.783  -0.263  O3   Z4W   8  
Z4W  O4   O4   O  0  1  N  N  N  4.588   3.671  -11.205  -2.624   0.888   0.020  O4   Z4W   9  
Z4W  O5   O5   O  0  1  N  N  N  2.794   1.467   -8.881   0.999   1.359   0.294  O5   Z4W  10  
Z4W  H1   H1   H  0  1  N  N  N  4.589   0.605   -8.310   1.388   0.590  -1.584  H1   Z4W  11  
Z4W  HO1  H1O  H  ?  1  N  Y  N  3.650  -1.577   -8.259   3.432   0.777  -0.363  HO1  Z4W  12  
Z4W  H2   H2   H  0  1  N  N  N  4.851  -0.795  -10.310   0.963  -1.755  -0.953  H2   Z4W  13  
Z4W  HO2  H2O  H  0  1  N  Y  N  3.247  -0.501  -11.994   1.695  -1.586   1.317  HO2  Z4W  14  
Z4W  H3   H3   H  0  1  N  N  N  5.728   1.473  -10.383  -0.967  -0.371  -1.613  H3   Z4W  15  
Z4W  HO3  H3O  H  0  1  N  Y  N  5.652   0.264  -12.375  -2.588  -1.650  -0.409  HO3  Z4W  16  
Z4W  H4   H4   H  0  1  N  N  N  3.008   2.350  -11.446  -1.194   0.249   1.369  H4   Z4W  17  
Z4W  HO4  H4O  H  0  1  N  Y  N  4.884   3.571  -12.102  -2.962   1.629   0.540  HO4  Z4W  18  
Z4W  H51  H51  H  0  1  N  N  N  2.683   3.483   -9.316  -0.633   2.557   0.705  H51  Z4W  19  
Z4W  H52  H52  H  0  1  N  N  N  4.275   2.898   -8.724  -0.467   2.043  -0.992  H52  Z4W  20  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Z4W  C1  H1   SING  N  N   1  
Z4W  C1  O1   SING  N  N   2  
Z4W  O1  HO1  SING  N  N   3  
Z4W  C1  O5   SING  N  N   4  
Z4W  C1  C2   SING  N  N   5  
Z4W  C2  H2   SING  N  N   6  
Z4W  C2  O2   SING  N  N   7  
Z4W  O2  HO2  SING  N  N   8  
Z4W  C2  C3   SING  N  N   9  
Z4W  C3  H3   SING  N  N  10  
Z4W  C3  O3   SING  N  N  11  
Z4W  O3  HO3  SING  N  N  12  
Z4W  C3  C4   SING  N  N  13  
Z4W  C4  H4   SING  N  N  14  
Z4W  C4  O4   SING  N  N  15  
Z4W  O4  HO4  SING  N  N  16  
Z4W  C4  C5   SING  N  N  17  
Z4W  C5  O5   SING  N  N  18  
Z4W  C5  H51  SING  N  N  19  
Z4W  C5  H52  SING  N  N  20  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Z4W  SMILES            ACDLabs               12.01  "OC1C(O)COC(O)C1O"  
Z4W  InChI             InChI                 1.03   "InChI=1S/C5H10O5/c6-2-1-10-5(9)4(8)3(2)7/h2-9H,1H2/t2-,3+,4+,5-/m1/s1"  
Z4W  InChIKey          InChI                 1.03   SRBFZHDQGSBBOR-MGCNEYSASA-N  
Z4W  SMILES_CANONICAL  CACTVS                3.370  "O[C@@H]1CO[C@@H](O)[C@@H](O)[C@H]1O"  
Z4W  SMILES            CACTVS                3.370  "O[CH]1CO[CH](O)[CH](O)[CH]1O"  
Z4W  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C1[C@H]([C@@H]([C@@H]([C@@H](O1)O)O)O)O"  
Z4W  SMILES            "OpenEye OEToolkits"  1.7.6  "C1C(C(C(C(O1)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Z4W  "SYSTEMATIC NAME"                      ACDLabs               12.01  beta-D-lyxopyranose  
Z4W  "SYSTEMATIC NAME"                      "OpenEye OEToolkits"  1.7.6  "(2R,3S,4S,5R)-oxane-2,3,4,5-tetrol"  
Z4W  "CONDENSED IUPAC CARBOHYDRATE SYMBOL"  GMML                  1.0    DLyxpb  
Z4W  "COMMON NAME"                          GMML                  1.0    b-D-lyxopyranose  
Z4W  "IUPAC CARBOHYDRATE SYMBOL"            PDB-CARE              1.0    b-D-Lyxp  
Z4W  "SNFG CARBOHYDRATE SYMBOL"             GMML                  1.0    Lyx  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
Z4W  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
Z4W  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
Z4W  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
Z4W  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Z4W  "Create component"          2012-12-18  RCSB  
Z4W  "Other modification"        2013-01-09  RCSB  
Z4W  "Modify atom id"            2013-01-11  RCSB  
Z4W  "Other modification"        2019-08-12  RCSB  
Z4W  "Other modification"        2019-12-19  RCSB  
Z4W  "Other modification"        2020-06-03  RCSB  
Z4W  "Other modification"        2020-06-10  RCSB  
Z4W  "Other modification"        2020-07-03  RCSB  
Z4W  "Modify atom id"            2020-07-17  RCSB  
Z4W  "Modify component atom id"  2020-07-17  RCSB  
Z4W  "Initial release"           2020-07-29  RCSB  
##
