data_8RX
# 
_chem_comp.id                                    8RX 
_chem_comp.name                                  "(3~{R})-3-(pent-4-ynylcarbamoyl)pyrrolidine-1-carboximidothioic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H17 N3 O S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-07-14 
_chem_comp.pdbx_modified_date                    2024-01-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        239.337 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8RX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PQ0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8RX C10  C1  C 0 1 N N N N N N -17.501 14.119 -4.454 3.039  0.674  0.373  C10  8RX 1  
8RX C13  C2  C 0 1 N N N N N N -18.894 17.848 -3.992 6.399  -1.060 0.025  C13  8RX 2  
8RX C02  C3  C 0 1 N N N N N N -17.703 14.176 2.135  -3.572 -1.137 0.090  C02  8RX 3  
8RX C05  C4  C 0 1 N N N N N N -19.406 13.749 0.261  -2.994 1.264  -0.485 C05  8RX 4  
8RX C06  C5  C 0 1 N N N N N N -19.400 12.531 -0.771 -1.683 2.032  -0.182 C06  8RX 5  
8RX C07  C6  C 0 1 N N R N N N -18.105 12.211 -1.072 -0.612 1.044  -0.715 C07  8RX 6  
8RX C08  C7  C 0 1 N N N N N N -17.465 13.183 -2.110 0.700  1.244  -0.002 C08  8RX 7  
8RX C11  C8  C 0 1 N N N N N N -18.469 15.393 -4.294 4.072  -0.313 -0.174 C11  8RX 8  
8RX C12  C9  C 0 1 N N N N N N -17.818 16.783 -4.185 5.405  -0.111 0.551  C12  8RX 9  
8RX C14  C10 C 0 1 N N N N N N -19.790 18.677 -3.838 7.192  -1.817 -0.395 C14  8RX 10 
8RX C16  C11 C 0 1 N N N N N N -17.357 12.456 0.372  -1.217 -0.335 -0.379 C16  8RX 11 
8RX N03  N1  N 0 1 N N N N N N -18.483 15.071 2.570  -3.162 -2.358 0.292  N03  8RX 12 
8RX N04  N2  N 0 1 N N N N N N -18.058 13.488 0.992  -2.668 -0.152 -0.232 N04  8RX 13 
8RX N09  N3  N 0 1 N N N N N N -18.051 13.189 -3.462 1.763  0.480  -0.320 N09  8RX 14 
8RX O15  O1  O 0 1 N N N N N N -16.512 13.874 -1.863 0.799  2.092  0.860  O15  8RX 15 
8RX H102 H1  H 0 0 N N N N N N -16.458 14.379 -4.222 2.902  0.502  1.441  H102 8RX 16 
8RX H101 H2  H 0 0 N N N N N N -17.558 13.699 -5.469 3.389  1.693  0.212  H101 8RX 17 
8RX H051 H4  H 0 0 N N N N N N -20.262 13.696 0.950  -3.790 1.595  0.182  H051 8RX 18 
8RX H052 H5  H 0 0 N N N N N N -19.410 14.721 -0.254 -3.287 1.406  -1.525 H052 8RX 19 
8RX H062 H6  H 0 0 N N N N N N -19.900 11.662 -0.319 -1.649 2.976  -0.726 H062 8RX 20 
8RX H061 H7  H 0 0 N N N N N N -19.931 12.822 -1.689 -1.565 2.197  0.889  H061 8RX 21 
8RX H071 H8  H 0 0 N N N N N N -17.969 11.165 -1.384 -0.485 1.157  -1.792 H071 8RX 22 
8RX H111 H9  H 0 0 N N N N N N -19.134 15.411 -5.170 3.722  -1.333 -0.012 H111 8RX 23 
8RX H112 H10 H 0 0 N N N N N N -19.066 15.239 -3.383 4.210  -0.141 -1.241 H112 8RX 24 
8RX H122 H11 H 0 0 N N N N N N -17.132 16.798 -3.325 5.267  -0.283 1.618  H122 8RX 25 
8RX H121 H12 H 0 0 N N N N N N -17.256 16.996 -5.106 5.755  0.909  0.389  H121 8RX 26 
8RX H141 H13 H 0 0 N N N N N N -20.562 19.391 -3.705 7.901  -2.495 -0.770 H141 8RX 27 
8RX H161 H14 H 0 0 N N N N N N -17.398 11.543 0.984  -1.012 -1.037 -1.188 H161 8RX 28 
8RX H162 H15 H 0 0 N N N N N N -16.307 12.746 0.215  -0.792 -0.709 0.553  H162 8RX 29 
8RX H031 H16 H 0 0 N N N N N N -18.155 15.470 3.426  -3.799 -3.053 0.518  H031 8RX 30 
8RX H091 H17 H 0 0 N N N N N N -18.804 12.575 -3.697 1.684  -0.199 -1.009 H091 8RX 31 
8RX S1   S1  S 0 1 N N N N N N -16.186 13.562 2.797  -5.286 -0.750 0.228  S1   8RX 32 
8RX H1   H17 H 0 1 N N N N N N -15.853 12.663 1.919  -5.798 -2.021 0.559  H1   8RX 33 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8RX N03 C02  DOUB N N 1  
8RX N04 C02  SING N N 2  
8RX C05 N04  SING N N 3  
8RX C06 C05  SING N N 4  
8RX C07 C06  SING N N 5  
8RX C10 N09  SING N N 6  
8RX C11 C10  SING N N 7  
8RX C12 C11  SING N N 8  
8RX C13 C12  SING N N 9  
8RX C14 C13  TRIP N N 10 
8RX N09 C08  SING N N 11 
8RX O15 C08  DOUB N N 12 
8RX C08 C07  SING N N 13 
8RX C16 C07  SING N N 14 
8RX N04 C16  SING N N 15 
8RX C10 H102 SING N N 16 
8RX C10 H101 SING N N 17 
8RX C05 H051 SING N N 18 
8RX C05 H052 SING N N 19 
8RX C06 H062 SING N N 20 
8RX C06 H061 SING N N 21 
8RX C07 H071 SING N N 22 
8RX C11 H111 SING N N 23 
8RX C11 H112 SING N N 24 
8RX C12 H122 SING N N 25 
8RX C12 H121 SING N N 26 
8RX C14 H141 SING N N 27 
8RX C16 H161 SING N N 28 
8RX C16 H162 SING N N 29 
8RX N03 H031 SING N N 30 
8RX N09 H091 SING N N 31 
8RX C02 S1   SING N N 32 
8RX S1  H1   SING N N 33 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8RX InChI            InChI                1.06  "InChI=1S/C11H17N3OS/c1-2-3-4-6-13-10(15)9-5-7-14(8-9)11(12)16/h1,9H,3-8H2,(H2,12,16)(H,13,15)/t9-/m1/s1" 
8RX InChIKey         InChI                1.06  FDJJUFUKBXRHKT-SECBINFHSA-N                                                                               
8RX SMILES_CANONICAL CACTVS               3.385 "SC(=N)N1CC[C@H](C1)C(=O)NCCCC#C"                                                                         
8RX SMILES           CACTVS               3.385 "SC(=N)N1CC[CH](C1)C(=O)NCCCC#C"                                                                          
8RX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N1CC[C@H](C1)C(=O)NCCCC#C)\S"                                                                   
8RX SMILES           "OpenEye OEToolkits" 2.0.7 "C#CCCCNC(=O)C1CCN(C1)C(=N)S"                                                                             
# 
_pdbx_chem_comp_identifier.comp_id           8RX 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(3~{R})-3-(pent-4-ynylcarbamoyl)pyrrolidine-1-carboximidothioic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8RX "Create component" 2023-07-14 PDBE 
8RX "Initial release"  2024-01-31 RCSB 
# 
