data_EIX
# 
_chem_comp.id                                    EIX 
_chem_comp.name                                  "[(2R,3S,5S)-5-[(4R,5R)-6-azanyl-5-fluoranyl-5-methyl-2-oxidanylidene-4-sulfanyl-4H-pyrimidin-3-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" 
_chem_comp.type                                  "DNA linking" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C10 H17 F N3 O7 P S" 
_chem_comp.mon_nstd_parent_comp_id               DC 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-04-20 
_chem_comp.pdbx_modified_date                    2022-11-25 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        373.295 
_chem_comp.one_letter_code                       C 
_chem_comp.three_letter_code                     EIX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7XI9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
EIX SG    S1  S 0 1 N N N 110.607 97.887  97.122  2.313  0.175  -2.120 SG    EIX 1  
EIX "C1'" C1  C 0 1 N N S 110.376 100.566 95.889  0.516  -1.093 0.705  "C1'" EIX 2  
EIX C2    C2  C 0 1 N N N 111.543 101.336 97.918  2.934  -1.071 0.962  C2    EIX 3  
EIX "C2'" C3  C 0 1 N N N 111.124 100.428 94.577  0.448  -2.544 0.167  "C2'" EIX 4  
EIX "C3'" C4  C 0 1 N N S 109.902 100.651 93.715  -1.082 -2.710 -0.041 "C3'" EIX 5  
EIX C4    C5  C 0 1 N N N 112.228 99.749  99.377  4.281  0.721  0.398  C4    EIX 6  
EIX "C4'" C6  C 0 1 N N R 109.141 101.767 94.414  -1.511 -1.290 -0.468 "C4'" EIX 7  
EIX C5    C7  C 0 1 N N R 112.830 98.952  98.255  3.069  1.570  0.109  C5    EIX 8  
EIX "C5'" C8  C 0 1 N N N 107.668 101.408 94.443  -2.855 -0.939 0.172  "C5'" EIX 9  
EIX C6    C9  C 0 1 N N R 111.930 99.090  97.041  1.942  0.678  -0.417 C6    EIX 10 
EIX CM5   C10 C 0 1 N N N 114.240 99.429  97.943  2.614  2.266  1.393  CM5   EIX 11 
EIX F     F1  F 0 1 N N N 112.898 97.686  98.603  3.392  2.533  -0.854 F     EIX 12 
EIX N1    N1  N 0 1 N N N 111.311 100.404 96.994  1.832  -0.511 0.432  N1    EIX 13 
EIX N3    N2  N 0 1 N N N 111.889 100.942 99.140  4.144  -0.510 0.814  N3    EIX 14 
EIX N4    N3  N 0 1 N N N 112.050 99.198  100.575 5.518  1.237  0.226  N4    EIX 15 
EIX O2    O1  O 0 1 N N N 111.444 102.519 97.670  2.830  -2.105 1.595  O2    EIX 16 
EIX "O3'" O2  O 0 1 N N N 110.179 100.873 92.344  -1.353 -3.656 -1.078 "O3'" EIX 17 
EIX "O4'" O3  O 0 1 N N N 109.678 101.801 95.740  -0.503 -0.377 -0.011 "O4'" EIX 18 
EIX "O5'" O4  O 0 1 N N N 106.989 102.285 95.327  -3.300 0.327  -0.318 "O5'" EIX 19 
EIX OP3   O5  O 0 1 N Y N 104.986 100.748 95.578  -4.608 1.367  1.713  OP1   EIX 20 
EIX OP2   O6  O 0 1 N N N 104.973 102.940 96.876  -4.925 2.358  -0.701 OP2   EIX 21 
EIX P     P1  P 0 1 N N N 105.409 102.159 95.544  -4.683 1.010  0.145  P     EIX 22 
EIX H1    H1  H 0 1 N N N 111.263 96.766  97.160  1.256  -0.591 -2.446 H1    EIX 23 
EIX H2    H2  H 0 1 N N N 109.640 99.750  95.938  0.310  -1.076 1.775  H2    EIX 24 
EIX H3    H3  H 0 1 N N N 111.572 99.433  94.440  0.985  -2.639 -0.777 H3    EIX 25 
EIX H4    H4  H 0 1 N N N 111.895 101.200 94.438  0.824  -3.254 0.904  H4    EIX 26 
EIX H5    H5  H 0 1 N N N 109.284 99.745  93.796  -1.572 -3.000 0.888  H5    EIX 27 
EIX H6    H6  H 0 1 N N N 109.293 102.721 93.889  -1.594 -1.239 -1.554 H6    EIX 28 
EIX H7    H7  H 0 1 N N N 107.246 101.506 93.432  -3.589 -1.704 -0.080 H7    EIX 29 
EIX H8    H8  H 0 1 N N N 107.549 100.371 94.791  -2.740 -0.889 1.255  H8    EIX 30 
EIX H9    H9  H 0 1 N N N 112.497 98.885  96.121  1.002  1.230  -0.397 H9    EIX 31 
EIX H10   H10 H 0 1 N N N 114.871 99.319  98.837  1.737  2.878  1.184  H10   EIX 32 
EIX H11   H11 H 0 1 N N N 114.658 98.826  97.123  2.363  1.516  2.143  H11   EIX 33 
EIX H12   H12 H 0 1 N N N 114.211 100.487 97.643  3.419  2.899  1.768  H12   EIX 34 
EIX H14   H14 H 0 1 N N N 111.639 99.731  101.314 5.624  2.151  -0.083 H14   EIX 35 
EIX HO3   H15 H 0 1 N N N 110.654 100.129 91.992  -1.102 -4.563 -0.858 H15   EIX 36 
EIX H16   H16 H 0 1 N N N 104.421 100.568 94.836  -3.896 1.980  1.943  H16   EIX 37 
EIX H17   H17 H 0 1 N N N 104.417 103.675 96.645  -5.742 2.823  -0.475 H17   EIX 38 
EIX OP1   O7  O 0 1 N N N 104.761 102.880 94.265  -5.801 0.070  -0.094 O1    EIX 39 
EIX H18   H18 H 0 1 N N N 112.328 98.251  100.736 6.300  0.694  0.411  H18   EIX 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
EIX "O3'" "C3'" SING N N 1  
EIX "C3'" "C4'" SING N N 2  
EIX "C3'" "C2'" SING N N 3  
EIX "C4'" "C5'" SING N N 4  
EIX "C4'" "O4'" SING N N 5  
EIX "C5'" "O5'" SING N N 6  
EIX "C2'" "C1'" SING N N 7  
EIX "O5'" P     SING N N 8  
EIX P     OP3   SING N N 9  
EIX P     OP2   SING N N 10 
EIX "O4'" "C1'" SING N N 11 
EIX "C1'" N1    SING N N 12 
EIX N1    C6    SING N N 13 
EIX N1    C2    SING N N 14 
EIX C6    SG    SING N N 15 
EIX C6    C5    SING N N 16 
EIX O2    C2    DOUB N N 17 
EIX C2    N3    SING N N 18 
EIX CM5   C5    SING N N 19 
EIX C5    F     SING N N 20 
EIX C5    C4    SING N N 21 
EIX N3    C4    DOUB N N 22 
EIX C4    N4    SING N N 23 
EIX SG    H1    SING N N 24 
EIX "C1'" H2    SING N N 25 
EIX "C2'" H3    SING N N 26 
EIX "C2'" H4    SING N N 27 
EIX "C3'" H5    SING N N 28 
EIX "C4'" H6    SING N N 29 
EIX "C5'" H7    SING N N 30 
EIX "C5'" H8    SING N N 31 
EIX C6    H9    SING N N 32 
EIX CM5   H10   SING N N 33 
EIX CM5   H11   SING N N 34 
EIX CM5   H12   SING N N 35 
EIX N4    H14   SING N N 36 
EIX "O3'" HO3   SING N N 37 
EIX OP3   H16   SING N N 38 
EIX OP2   H17   SING N N 39 
EIX P     OP1   DOUB N N 40 
EIX N4    H18   SING N N 41 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
EIX InChI            InChI                1.03  "InChI=1S/C10H17FN3O7PS/c1-10(11)7(12)13-9(16)14(8(10)23)6-2-4(15)5(21-6)3-20-22(17,18)19/h4-6,8,15,23H,2-3H2,1H3,(H2,12,13,16)(H2,17,18,19)/t4-,5+,6-,8+,10+/m0/s1" 
EIX InChIKey         InChI                1.03  WAORVXYEMGHEBO-ULKLUNNDSA-N                                                                                                                                          
EIX SMILES_CANONICAL CACTVS               3.385 "C[C@]1(F)[C@@H](S)N([C@@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C(=O)N=C1N"                                                                                             
EIX SMILES           CACTVS               3.385 "C[C]1(F)[CH](S)N([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C(=O)N=C1N"                                                                                                     
EIX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@]1([C@H](N(C(=O)N=C1N)[C@@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O)S)F"                                                                                               
EIX SMILES           "OpenEye OEToolkits" 2.0.7 "CC1(C(N(C(=O)N=C1N)C2CC(C(O2)COP(=O)(O)O)O)S)F"                                                                                                                     
# 
_pdbx_chem_comp_identifier.comp_id           EIX 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{R},3~{S},5~{S})-5-[(4~{R},5~{R})-6-azanyl-5-fluoranyl-5-methyl-2-oxidanylidene-4-sulfanyl-4~{H}-pyrimidin-3-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
EIX "Create component" 2022-04-20 PDBJ 
EIX "Initial release"  2022-11-30 RCSB 
# 
