data_Q8X
# 
_chem_comp.id                                    Q8X 
_chem_comp.name                                  "(2~{R})-2-azanyl-3-[(6-pyridin-2-ylpyridin-3-yl)methylsulfanyl]propanal" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C14 H15 N3 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               CYS 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-07-20 
_chem_comp.pdbx_modified_date                    2024-06-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        289.353 
_chem_comp.one_letter_code                       C 
_chem_comp.three_letter_code                     Q8X 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8AF3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Q8X N   N   N 0 1 N N N Y Y N 26.558 34.359 17.646 4.598  1.559  1.111  N   Q8X 1  
Q8X CA  CA  C 0 1 N N R N Y N 27.467 33.501 18.444 4.821  0.157  0.734  CA  Q8X 2  
Q8X C   C   C 0 1 N N N N Y Y 26.814 33.253 19.801 6.234  -0.011 0.235  C   Q8X 3  
Q8X O   O   O 0 1 N N N N Y Y 26.526 32.097 20.142 6.858  0.951  -0.145 O   Q8X 4  
Q8X CB  CB  C 0 1 N N N N N N 28.851 34.120 18.497 3.840  -0.236 -0.373 CB  Q8X 5  
Q8X SG  SG  S 0 1 N N N N N N 29.176 35.260 19.856 2.140  -0.035 0.227  SG  Q8X 6  
Q8X C10 C10 C 0 1 Y N N N N N 29.691 42.804 19.693 -5.029 1.243  -0.211 C10 Q8X 7  
Q8X C11 C11 C 0 1 Y N N N N N 29.476 44.105 20.112 -6.372 1.388  0.091  C11 Q8X 8  
Q8X C12 C12 C 0 1 Y N N N N N 29.243 44.354 21.455 -7.045 0.313  0.654  C12 Q8X 9  
Q8X C13 C13 C 0 1 Y N N N N N 29.235 43.296 22.351 -6.360 -0.865 0.894  C13 Q8X 10 
Q8X C3  C3  C 0 1 N N N N N N 30.522 36.288 19.194 1.141  -0.541 -1.200 C3  Q8X 11 
Q8X C4  C4  C 0 1 Y N N N N N 30.318 37.744 19.528 -0.321 -0.428 -0.855 C4  Q8X 12 
Q8X C5  C5  C 0 1 Y N N N N N 30.350 38.710 18.532 -0.993 -1.503 -0.293 C5  Q8X 13 
Q8X C6  C6  C 0 1 Y N N N N N 30.138 40.038 18.876 -2.337 -1.358 0.009  C6  Q8X 14 
Q8X C7  C7  C 0 1 Y N N N N N 29.904 40.371 20.206 -2.964 -0.144 -0.260 C7  Q8X 15 
Q8X C8  C8  C 0 1 Y N N N N N 30.073 38.124 20.840 -1.005 0.752  -1.090 C8  Q8X 16 
Q8X C9  C9  C 0 1 Y N N N N N 29.673 41.776 20.621 -4.403 0.028  0.058  C9  Q8X 17 
Q8X N2  N2  N 0 1 Y N N N N N 29.879 39.412 21.148 -2.284 0.861  -0.798 N2  Q8X 18 
Q8X N3  N3  N 0 1 Y N N N N N 29.441 42.044 21.919 -5.081 -0.976 0.596  N3  Q8X 19 
Q8X H   H   H 0 1 N N N Y Y N 25.648 33.944 17.616 4.738  2.172  0.322  H   Q8X 20 
Q8X H2  H1  H 0 1 N Y N Y Y N 26.498 35.264 18.068 3.679  1.684  1.508  H2  Q8X 21 
Q8X HA  HA  H 0 1 N N N N Y N 27.555 32.530 17.935 4.665  -0.483 1.602  HA  Q8X 22 
Q8X HB3 HB3 H 0 1 N N N N N N 29.581 33.300 18.568 3.997  0.403  -1.241 HB3 Q8X 23 
Q8X HB2 HB2 H 0 1 N N N N N N 29.007 34.669 17.557 4.006  -1.277 -0.653 HB2 Q8X 24 
Q8X H12 H12 H 0 1 N N N N N N 29.872 42.592 18.650 -4.476 2.058  -0.654 H12 Q8X 25 
Q8X H13 H13 H 0 1 N N N N N N 29.490 44.917 19.400 -6.885 2.318  -0.105 H13 Q8X 26 
Q8X H14 H14 H 0 1 N N N N N N 29.069 45.362 21.800 -8.093 0.394  0.901  H14 Q8X 27 
Q8X H15 H15 H 0 1 N N N N N N 29.062 43.481 23.401 -6.880 -1.704 1.332  H15 Q8X 28 
Q8X H8  H8  H 0 1 N N N N N N 30.555 36.173 18.101 1.366  0.106  -2.048 H8  Q8X 29 
Q8X H7  H7  H 0 1 N N N N N N 31.475 35.952 19.627 1.375  -1.574 -1.459 H7  Q8X 30 
Q8X H9  H9  H 0 1 N N N N N N 30.537 38.433 17.505 -0.481 -2.433 -0.096 H9  Q8X 31 
Q8X H10 H10 H 0 1 N N N N N N 30.155 40.806 18.117 -2.891 -2.175 0.447  H10 Q8X 32 
Q8X H11 H11 H 0 1 N N N N N N 30.039 37.375 21.618 -0.483 1.592  -1.523 H11 Q8X 33 
Q8X OXT OXT O 0 1 N Y N N Y Y ?      ?      ?      6.798  -1.228 0.214  O1  Q8X 34 
Q8X HXT HXT H 0 1 N Y N N Y Y ?      ?      ?      7.706  -1.286 -0.114 H1  Q8X 35 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Q8X N   CA  SING N N 1  
Q8X CA  CB  SING N N 2  
Q8X CA  C   SING N N 3  
Q8X CB  SG  SING N N 4  
Q8X C5  C6  DOUB Y N 5  
Q8X C5  C4  SING Y N 6  
Q8X C6  C7  SING Y N 7  
Q8X C3  C4  SING N N 8  
Q8X C3  SG  SING N N 9  
Q8X C4  C8  DOUB Y N 10 
Q8X C10 C11 DOUB Y N 11 
Q8X C10 C9  SING Y N 12 
Q8X C   O   DOUB N N 13 
Q8X C11 C12 SING Y N 14 
Q8X C7  C9  SING N N 15 
Q8X C7  N2  DOUB Y N 16 
Q8X C9  N3  DOUB Y N 17 
Q8X C8  N2  SING Y N 18 
Q8X C12 C13 DOUB Y N 19 
Q8X N3  C13 SING Y N 20 
Q8X N   H   SING N N 21 
Q8X N   H2  SING N N 22 
Q8X CA  HA  SING N N 23 
Q8X CB  HB3 SING N N 24 
Q8X CB  HB2 SING N N 25 
Q8X C10 H12 SING N N 26 
Q8X C11 H13 SING N N 27 
Q8X C12 H14 SING N N 28 
Q8X C13 H15 SING N N 29 
Q8X C3  H8  SING N N 30 
Q8X C3  H7  SING N N 31 
Q8X C5  H9  SING N N 32 
Q8X C6  H10 SING N N 33 
Q8X C8  H11 SING N N 34 
Q8X C   OXT SING N N 35 
Q8X OXT HXT SING N N 36 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Q8X InChI            InChI                1.06  "InChI=1S/C14H15N3O2S/c15-11(14(18)19)9-20-8-10-4-5-13(17-7-10)12-3-1-2-6-16-12/h1-7,11H,8-9,15H2,(H,18,19)/t11-/m0/s1" 
Q8X InChIKey         InChI                1.06  ANWKVUXJRPIXEU-NSHDSACASA-N                                                                                             
Q8X SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CSCc1ccc(nc1)c2ccccn2)C(O)=O"                                                                                  
Q8X SMILES           CACTVS               3.385 "N[CH](CSCc1ccc(nc1)c2ccccn2)C(O)=O"                                                                                    
Q8X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccnc(c1)c2ccc(cn2)CSC[C@@H](C(=O)O)N"                                                                                
Q8X SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccnc(c1)c2ccc(cn2)CSCC(C(=O)O)N"                                                                                     
# 
_pdbx_chem_comp_identifier.comp_id           Q8X 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R})-2-azanyl-3-[(6-pyridin-2-ylpyridin-3-yl)methylsulfanyl]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Q8X "Create component"   2022-07-21 EBI  
Q8X "Modify descriptor"  2022-08-22 RCSB 
Q8X "Initial release"    2023-08-16 RCSB 
Q8X "Modify backbone"    2023-11-03 PDBE 
Q8X "Other modification" 2024-06-28 PDBE 
# 
