data_Q8X
# 
_chem_comp.id                                    Q8X 
_chem_comp.name                                  "(2~{R})-2-azanyl-3-[(6-pyridin-2-ylpyridin-3-yl)methylsulfanyl]propanal" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C14 H15 N3 O S" 
_chem_comp.mon_nstd_parent_comp_id               CYS 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-07-20 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        273.353 
_chem_comp.one_letter_code                       C 
_chem_comp.three_letter_code                     Q8X 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8AF3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Q8X N   N   N 0 1 N N N Y Y N 26.558 34.359 17.646 5.038  1.426  0.971  N   Q8X 1  
Q8X CA  CA  C 0 1 N N R Y N N 27.467 33.501 18.444 5.219  -0.009 0.713  CA  Q8X 2  
Q8X C   C   C 0 1 N N N Y N Y 26.814 33.253 19.801 6.624  -0.259 0.229  C   Q8X 3  
Q8X O   O   O 0 1 N N N Y N Y 26.526 32.097 20.142 7.396  0.663  0.112  O   Q8X 4  
Q8X CB  CB  C 0 1 N N N N N N 28.851 34.120 18.497 4.223  -0.464 -0.356 CB  Q8X 5  
Q8X SG  SG  S 0 1 N N N N N N 29.176 35.260 19.856 2.532  -0.163 0.226  SG  Q8X 6  
Q8X C10 C10 C 0 1 Y N N N N N 29.691 42.804 19.693 -4.599 1.284  -0.313 C10 Q8X 7  
Q8X C11 C11 C 0 1 Y N N N N N 29.476 44.105 20.112 -5.936 1.494  -0.023 C11 Q8X 8  
Q8X C12 C12 C 0 1 Y N N N N N 29.243 44.354 21.455 -6.638 0.489  0.628  C12 Q8X 9  
Q8X C13 C13 C 0 1 Y N N N N N 29.235 43.296 22.351 -5.987 -0.683 0.966  C13 Q8X 10 
Q8X C3  C3  C 0 1 N N N N N N 30.522 36.288 19.194 1.514  -0.757 -1.153 C3  Q8X 11 
Q8X C4  C4  C 0 1 Y N N N N N 30.318 37.744 19.528 0.056  -0.573 -0.818 C4  Q8X 12 
Q8X C5  C5  C 0 1 Y N N N N N 30.350 38.710 18.532 -0.645 -1.577 -0.167 C5  Q8X 13 
Q8X C6  C6  C 0 1 Y N N N N N 30.138 40.038 18.876 -1.983 -1.367 0.123  C6  Q8X 14 
Q8X C7  C7  C 0 1 Y N N N N N 29.904 40.371 20.206 -2.575 -0.162 -0.247 C7  Q8X 15 
Q8X C8  C8  C 0 1 Y N N N N N 30.073 38.124 20.840 -0.593 0.602  -1.151 C8  Q8X 16 
Q8X C9  C9  C 0 1 Y N N N N N 29.673 41.776 20.621 -4.007 0.078  0.057  C9  Q8X 17 
Q8X N2  N2  N 0 1 Y N N N N N 29.879 39.412 21.148 -1.868 0.773  -0.868 N2  Q8X 18 
Q8X N3  N3  N 0 1 Y N N N N N 29.441 42.044 21.919 -4.713 -0.857 0.678  N3  Q8X 19 
Q8X H   H   H 0 1 N N N Y Y N 25.648 33.944 17.616 5.193  1.967  0.133  H   Q8X 20 
Q8X H2  H1  H 0 1 N Y N Y Y N 26.498 35.264 18.068 4.125  1.612  1.357  H1  Q8X 21 
Q8X HA  HA  H 0 1 N N N Y N N 27.555 32.530 17.935 5.046  -0.568 1.632  HA  Q8X 22 
Q8X H3  H3  H 0 1 N Y N Y N Y 26.604 34.081 20.461 6.942  -1.262 -0.012 H3  Q8X 23 
Q8X HB3 HB3 H 0 1 N N N N N N 29.581 33.300 18.568 4.396  0.095  -1.276 HB3 Q8X 24 
Q8X HB2 HB2 H 0 1 N N N N N N 29.007 34.669 17.557 4.358  -1.529 -0.548 HB2 Q8X 25 
Q8X H12 H12 H 0 1 N N N N N N 29.872 42.592 18.650 -4.023 2.043  -0.823 H12 Q8X 26 
Q8X H13 H13 H 0 1 N N N N N N 29.490 44.917 19.400 -6.422 2.418  -0.297 H13 Q8X 27 
Q8X H14 H14 H 0 1 N N N N N N 29.069 45.362 21.800 -7.682 0.622  0.869  H14 Q8X 28 
Q8X H15 H15 H 0 1 N N N N N N 29.062 43.481 23.401 -6.530 -1.467 1.473  H15 Q8X 29 
Q8X H8  H8  H 0 1 N N N N N N 30.555 36.173 18.101 1.755  -0.191 -2.053 H8  Q8X 30 
Q8X H7  H7  H 0 1 N N N N N N 31.475 35.952 19.627 1.716  -1.815 -1.325 H7  Q8X 31 
Q8X H9  H9  H 0 1 N N N N N N 30.537 38.433 17.505 -0.159 -2.502 0.107  H9  Q8X 32 
Q8X H10 H10 H 0 1 N N N N N N 30.155 40.806 18.117 -2.559 -2.128 0.628  H10 Q8X 33 
Q8X H11 H11 H 0 1 N N N N N N 30.039 37.375 21.618 -0.049 1.388  -1.653 H11 Q8X 34 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Q8X N   CA  SING N N 1  
Q8X CA  CB  SING N N 2  
Q8X CA  C   SING N N 3  
Q8X CB  SG  SING N N 4  
Q8X C5  C6  DOUB Y N 5  
Q8X C5  C4  SING Y N 6  
Q8X C6  C7  SING Y N 7  
Q8X C3  C4  SING N N 8  
Q8X C3  SG  SING N N 9  
Q8X C4  C8  DOUB Y N 10 
Q8X C10 C11 DOUB Y N 11 
Q8X C10 C9  SING Y N 12 
Q8X C   O   DOUB N N 13 
Q8X C11 C12 SING Y N 14 
Q8X C7  C9  SING N N 15 
Q8X C7  N2  DOUB Y N 16 
Q8X C9  N3  DOUB Y N 17 
Q8X C8  N2  SING Y N 18 
Q8X C12 C13 DOUB Y N 19 
Q8X N3  C13 SING Y N 20 
Q8X N   H   SING N N 21 
Q8X N   H2  SING N N 22 
Q8X CA  HA  SING N N 23 
Q8X C   H3  SING N N 24 
Q8X CB  HB3 SING N N 25 
Q8X CB  HB2 SING N N 26 
Q8X C10 H12 SING N N 27 
Q8X C11 H13 SING N N 28 
Q8X C12 H14 SING N N 29 
Q8X C13 H15 SING N N 30 
Q8X C3  H8  SING N N 31 
Q8X C3  H7  SING N N 32 
Q8X C5  H9  SING N N 33 
Q8X C6  H10 SING N N 34 
Q8X C8  H11 SING N N 35 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Q8X InChI            InChI                1.06  "InChI=1S/C14H15N3OS/c15-12(8-18)10-19-9-11-4-5-14(17-7-11)13-3-1-2-6-16-13/h1-8,12H,9-10,15H2/t12-/m1/s1" 
Q8X InChIKey         InChI                1.06  RHKAOVWGRWLZML-GFCCVEGCSA-N                                                                                
Q8X SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CSCc1ccc(nc1)c2ccccn2)C=O"                                                                        
Q8X SMILES           CACTVS               3.385 "N[CH](CSCc1ccc(nc1)c2ccccn2)C=O"                                                                          
Q8X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccnc(c1)c2ccc(cn2)CSC[C@@H](C=O)N"                                                                      
Q8X SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccnc(c1)c2ccc(cn2)CSCC(C=O)N"                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           Q8X 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R})-2-azanyl-3-[(6-pyridin-2-ylpyridin-3-yl)methylsulfanyl]propanal" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Q8X "Create component"  2022-07-21 EBI  
Q8X "Modify descriptor" 2022-08-22 RCSB 
Q8X "Initial release"   2023-08-16 RCSB 
Q8X "Modify backbone"   2023-11-03 PDBE 
# 
