data_X
#

_chem_comp.id                                   X
_chem_comp.name                                 "2'-DEOXY-N7-(8,9-DIHYDRO-9-HYDROXY-10-DEHYDROXY-AFLATOXIN)GUANOSINE MONOPHOSPHATE"
_chem_comp.type                                 "DNA LINKING"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C27 H27 N5 O14 P"
_chem_comp.mon_nstd_parent_comp_id              DG
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2019-03-15
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  OBS
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       676.502
_chem_comp.one_letter_code                      G
_chem_comp.three_letter_code                    X
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1AG5
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
X  P       P       P  0  1  N  N  N  -1.323   7.626  16.426   2.972  -4.962  -0.221  P       X   1  
X  OP1     O1P     O  0  1  N  N  N  -0.146   7.202  17.217   2.238  -4.831   1.058  OP1     X   2  
X  OP2     O2P     O  0  1  N  N  N  -2.192   8.713  16.929   4.214  -5.968  -0.026  OP2     X   3  
X  OP3     O3P     O  0  1  N  Y  N  -0.824   8.005  14.944   1.983  -5.542  -1.351  OP3     X   4  
X  "O5'"   "O5'"   O  0  1  N  N  N  -2.241   6.334  16.142   3.518  -3.517  -0.676  "O5'"   X   5  
X  "C5'"   "C5'"   C  0  1  N  N  N  -3.425   6.441  15.341   4.336  -2.696   0.160  "C5'"   X   6  
X  "C4'"   "C4'"   C  0  1  N  N  R  -4.318   5.221  15.518   4.675  -1.398  -0.576  "C4'"   X   7  
X  "O4'"   "O4'"   O  0  1  N  N  N  -3.658   4.007  15.094   3.488  -0.602  -0.776  "O4'"   X   8  
X  "C3'"   "C3'"   C  0  1  N  N  S  -4.704   5.049  16.980   5.574  -0.491   0.303  "C3'"   X   9  
X  "O3'"   "O3'"   O  0  1  N  N  N  -6.117   5.296  17.126   6.953  -0.828   0.140  "O3'"   X  10  
X  "C2'"   "C2'"   C  0  1  N  N  N  -4.291   3.630  17.337   5.277   0.915  -0.271  "C2'"   X  11  
X  "C1'"   "C1'"   C  0  1  N  N  R  -3.986   2.954  16.016   3.921   0.753  -0.984  "C1'"   X  12  
X  N9      N9      N  0  1  Y  N  N  -2.891   1.963  16.131   2.943   1.682  -0.412  N9      X  13  
X  C8      C8      C  0  1  Y  N  N  -1.547   2.138  16.262   2.053   1.405   0.584  C8      X  14  
X  N7      N7      N  1  1  Y  N  N  -0.804   1.071  16.288   1.338   2.460   0.844  N7      X  15  
X  C5      C5      C  0  1  Y  N  N  -1.762   0.061  16.159   1.725   3.474   0.032  C5      X  16  
X  C6      C6      C  0  1  N  N  N  -1.593  -1.349  16.124   1.313   4.818  -0.130  C6      X  17  
X  O6      O6      O  0  1  N  N  N  -0.548  -1.994  16.176   0.420   5.285   0.556  O6      X  18  
X  N1      N1      N  0  1  N  N  N  -2.810  -2.003  16.001   1.936   5.572  -1.063  N1      X  19  
X  C2      C2      C  0  1  N  N  N  -4.041  -1.389  15.917   2.934   5.040  -1.824  C2      X  20  
X  N2      N2      N  0  1  N  N  N  -5.093  -2.198  15.816   3.548   5.829  -2.764  N2      X  21  
X  N3      N3      N  0  1  N  N  N  -4.209  -0.065  15.945   3.325   3.793  -1.683  N3      X  22  
X  C4      C4      C  0  1  Y  N  N  -3.036   0.597  16.069   2.759   2.989  -0.776  C4      X  23  
X  C1      C1      C  0  1  N  N  N  -2.185  -2.252  10.134  -7.165  -0.390  -1.428  C1      X  24  
X  O1      O1      O  0  1  N  N  N  -1.901  -3.319   9.667  -8.051   0.401  -1.674  O1      X  25  
X  C2A     C2A     C  0  1  N  N  N  -3.480  -1.451   9.817  -7.133  -1.848  -1.837  C2A     X  26  
X  C3      C3      C  0  1  N  N  N  -3.385  -0.162  10.652  -5.806  -2.395  -1.280  C3      X  27  
X  C3A     C3A     C  0  1  N  N  N  -2.094  -0.308  11.366  -5.147  -1.249  -0.586  C3A     X  28  
X  C4A     C4A     C  0  1  Y  N  N  -1.577   0.617  12.241  -3.921  -1.163   0.099  C4A     X  29  
X  C4B     C4B     C  0  1  Y  N  N  -2.247   1.842  12.535  -2.995  -2.219   0.112  C4B     X  30  
X  O4      O4      O  0  1  N  N  N  -3.433   2.078  11.945  -3.293  -3.395  -0.495  O4      X  31  
X  CM      CM      C  0  1  N  N  N  -4.116   3.295  12.183  -2.303  -4.423  -0.440  CM      X  32  
X  C5B     C5B     C  0  1  Y  N  N  -1.652   2.762  13.414  -1.781  -2.056   0.744  C5B     X  33  
X  C5M     C5M     C  0  1  Y  N  N  -0.416   2.424  13.971  -1.471  -0.851   1.384  C5M     X  34  
X  O6A     O6A     O  0  1  N  N  N   0.313   3.213  14.841  -0.330  -0.491   2.031  O6A     X  35  
X  C6A     C6A     C  0  1  N  N  S   1.501   2.508  15.141  -0.599   0.623   2.896  C6A     X  36  
X  O7      O7      O  0  1  N  N  N   1.551   1.989  16.353   0.493   1.543   2.855  O7      X  37  
X  C8A     C8A     C  0  1  N  N  R   0.633   0.908  16.628   0.280   2.540   1.854  C8A     X  38  
X  C9      C9      C  0  1  N  N  R   1.546   0.185  15.607  -1.086   2.276   1.199  C9      X  39  
X  O9      O9      O  0  1  N  N  N   2.871   0.059  16.082  -1.820   3.494   1.063  O9      X  40  
X  C9A     C9A     C  0  1  N  N  R   1.448   1.211  14.414  -1.793   1.324   2.187  C9A     X  41  
X  C9B     C9B     C  0  1  Y  N  N   0.171   1.286  13.702  -2.407   0.176   1.410  C9B     X  42  
X  C10     C10     C  0  1  Y  N  N  -0.362   0.353  12.842  -3.637   0.039   0.794  C10     X  43  
X  O10     O10     O  0  1  N  N  N   0.316  -0.812  12.564  -4.555   1.029   0.893  O10     X  44  
X  C11     C11     C  0  1  N  N  N  -0.193  -1.772  11.661  -5.484   1.156  -0.089  C11     X  45  
X  O11     O11     O  0  1  N  N  N   0.465  -2.756  11.471  -5.904   2.241  -0.447  O11     X  46  
X  C12     C12     C  0  1  N  N  N  -1.457  -1.455  11.067  -5.950  -0.105  -0.698  C12     X  47  
X  HOP2    HOP2    H  0  0  N  N  N  -1.858   9.026  17.762   4.741  -6.101  -0.826  HOP2    X  48  
X  HOP3    HOP3    H  0  0  N  N  N   0.116   7.879  14.884   1.615  -6.412  -1.143  HOP3    X  49  
X  "H5'"   "H5'1"  H  0  1  N  N  N  -3.982   7.341  15.641   3.798  -2.463   1.079  "H5'"   X  50  
X  "H5''"  "H5'2"  H  0  0  N  N  N  -3.137   6.525  14.283   5.256  -3.227   0.403  "H5''"  X  51  
X  "H4'"   "H4'"   H  0  1  N  N  N  -5.235   5.369  14.928   5.159  -1.613  -1.528  "H4'"   X  52  
X  "H3'"   "H3'"   H  0  1  N  N  N  -4.127   5.758  17.592   5.282  -0.553   1.352  "H3'"   X  53  
X  "HO3'"  "HO3'"  H  0  0  N  Y  N  -6.365   5.190  18.037   7.555  -0.288   0.670  "HO3'"  X  54  
X  "H2'"   "H2'1"  H  0  1  N  N  N  -3.398   3.639  17.979   5.201   1.648   0.532  "H2'"   X  55  
X  "H2''"  "H2'2"  H  0  0  N  N  N  -5.110   3.110  17.855   6.049   1.207  -0.983  "H2''"  X  56  
X  "H1'"   "H1'"   H  0  1  N  N  N  -4.895   2.439  15.673   4.037   0.945  -2.051  "H1'"   X  57  
X  H8      H8      H  0  1  N  N  N  -1.115   3.125  16.341   1.957   0.452   1.083  H8      X  58  
X  H1      H1      H  0  1  N  N  N  -2.793  -3.002  15.971   1.671   6.496  -1.192  H1      X  59  
X  H21     H21     H  0  1  N  N  N  -6.015  -1.815  15.761   3.270   6.751  -2.879  H21     X  60  
X  H22     H22     H  0  1  N  N  N  -4.961  -3.189  15.795   4.260   5.464  -3.313  H22     X  61  
X  H2A1    H2A1    H  0  0  N  N  N  -3.530  -1.211   8.745  -7.976  -2.382  -1.399  H2A1    X  62  
X  H2A2    H2A2    H  0  0  N  N  N  -4.370  -2.030  10.105  -7.153  -1.936  -2.924  H2A2    X  63  
X  H31     H31     H  0  1  N  N  N  -3.378   0.727  10.004  -6.000  -3.202  -0.573  H31     X  64  
X  H32     H32     H  0  1  N  N  N  -4.222  -0.091  11.363  -5.176  -2.753  -2.095  H32     X  65  
X  HM1     HM1     H  0  1  N  N  N  -5.060   3.303  11.618  -1.388  -4.071  -0.917  HM1     X  66  
X  HM2     HM2     H  0  1  N  N  N  -4.332   3.390  13.257  -2.097  -4.674   0.600  HM2     X  67  
X  HM3     HM3     H  0  1  N  N  N  -3.487   4.138  11.859  -2.668  -5.307  -0.963  HM3     X  68  
X  H5B     H5B     H  0  1  N  N  N  -2.134   3.699  13.651  -1.063  -2.863   0.745  H5B     X  69  
X  H6A     H6A     H  0  1  N  N  N   2.401   3.077  14.865  -0.836   0.309   3.913  H6A     X  70  
X  H8A     H8A     H  0  1  N  N  N   0.768   0.490  17.637   0.284   3.529   2.313  H8A     X  71  
X  H9      H9      H  0  1  N  N  N   1.108  -0.781  15.314  -0.958   1.798   0.228  H9      X  72  
X  HO9     HO9     H  0  1  N  N  N   3.400  -0.388  15.431  -1.389   4.154   0.502  HO9     X  73  
X  H9A     H9A     H  0  1  N  N  N   2.300   1.090  13.729  -2.480   1.828   2.867  H9A     X  74  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
X  P      OP1     DOUB  N  N   1  
X  P      OP2     SING  N  N   2  
X  P      OP3     SING  N  N   3  
X  P      "O5'"   SING  N  N   4  
X  OP2    HOP2    SING  N  N   5  
X  OP3    HOP3    SING  N  N   6  
X  "O5'"  "C5'"   SING  N  N   7  
X  "C5'"  "C4'"   SING  N  N   8  
X  "C5'"  "H5'"   SING  N  N   9  
X  "C5'"  "H5''"  SING  N  N  10  
X  "C4'"  "O4'"   SING  N  N  11  
X  "C4'"  "C3'"   SING  N  N  12  
X  "C4'"  "H4'"   SING  N  N  13  
X  "O4'"  "C1'"   SING  N  N  14  
X  "C3'"  "O3'"   SING  N  N  15  
X  "C3'"  "C2'"   SING  N  N  16  
X  "C3'"  "H3'"   SING  N  N  17  
X  "O3'"  "HO3'"  SING  N  N  18  
X  "C2'"  "C1'"   SING  N  N  19  
X  "C2'"  "H2'"   SING  N  N  20  
X  "C2'"  "H2''"  SING  N  N  21  
X  "C1'"  N9      SING  N  N  22  
X  "C1'"  "H1'"   SING  N  N  23  
X  N9     C8      SING  Y  N  24  
X  N9     C4      SING  Y  N  25  
X  C8     N7      DOUB  Y  N  26  
X  C8     H8      SING  N  N  27  
X  N7     C5      SING  Y  N  28  
X  N7     C8A     SING  N  N  29  
X  C5     C6      SING  N  N  30  
X  C5     C4      DOUB  Y  N  31  
X  C6     O6      DOUB  N  N  32  
X  C6     N1      SING  N  N  33  
X  N1     C2      SING  N  N  34  
X  N1     H1      SING  N  N  35  
X  C2     N2      SING  N  N  36  
X  C2     N3      DOUB  N  N  37  
X  N2     H21     SING  N  N  38  
X  N2     H22     SING  N  N  39  
X  N3     C4      SING  N  N  40  
X  C1     O1      DOUB  N  N  41  
X  C1     C2A     SING  N  N  42  
X  C1     C12     SING  N  N  43  
X  C2A    C3      SING  N  N  44  
X  C2A    H2A1    SING  N  N  45  
X  C2A    H2A2    SING  N  N  46  
X  C3     C3A     SING  N  N  47  
X  C3     H31     SING  N  N  48  
X  C3     H32     SING  N  N  49  
X  C3A    C4A     SING  N  N  50  
X  C3A    C12     DOUB  N  N  51  
X  C4A    C4B     SING  Y  N  52  
X  C4A    C10     DOUB  Y  N  53  
X  C4B    O4      SING  N  N  54  
X  C4B    C5B     DOUB  Y  N  55  
X  O4     CM      SING  N  N  56  
X  CM     HM1     SING  N  N  57  
X  CM     HM2     SING  N  N  58  
X  CM     HM3     SING  N  N  59  
X  C5B    C5M     SING  Y  N  60  
X  C5B    H5B     SING  N  N  61  
X  C5M    O6A     SING  N  N  62  
X  C5M    C9B     DOUB  Y  N  63  
X  O6A    C6A     SING  N  N  64  
X  C6A    O7      SING  N  N  65  
X  C6A    C9A     SING  N  N  66  
X  C6A    H6A     SING  N  N  67  
X  O7     C8A     SING  N  N  68  
X  C8A    C9      SING  N  N  69  
X  C8A    H8A     SING  N  N  70  
X  C9     O9      SING  N  N  71  
X  C9     C9A     SING  N  N  72  
X  C9     H9      SING  N  N  73  
X  O9     HO9     SING  N  N  74  
X  C9A    C9B     SING  N  N  75  
X  C9A    H9A     SING  N  N  76  
X  C9B    C10     SING  Y  N  77  
X  C10    O10     SING  N  N  78  
X  O10    C11     SING  N  N  79  
X  C11    O11     DOUB  N  N  80  
X  C11    C12     SING  N  N  81  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
X  SMILES            ACDLabs               12.01  "P(=O)(O)(O)OCC1OC(CC1O)n2c[n+](c3C(=O)NC(N)=Nc23)C8OC7Oc6cc(c5C=4CCC(=O)C=4C(Oc5c6C7C8O)=O)OC"  
X  InChI             InChI                 1.03   "InChI=1S/C27H26N5O14P/c1-41-11-5-12-17(21-16(11)8-2-3-9(33)15(8)25(37)45-21)18-20(35)24(46-26(18)44-12)32-7-31(22-19(32)23(36)30-27(28)29-22)14-4-10(34)13(43-14)6-42-47(38,39)40/h5,7,10,13-14,18,20,24,26,34-35H,2-4,6H2,1H3,(H4-,28,29,30,36,38,39,40)/p+1/t10-,13+,14+,18+,20+,24+,26-/m0/s1"  
X  InChIKey          InChI                 1.03   OBYKYKOLZOZQPE-MHRKVAGWSA-O  
X  SMILES_CANONICAL  CACTVS                3.385  "COc1cc2O[C@H]3O[C@H]([C@H](O)[C@H]3c2c4OC(=O)C5=C(CCC5=O)c14)[n+]6cn([C@H]7C[C@H](O)[C@@H](CO[P](O)(O)=O)O7)c8N=C(N)NC(=O)c68"  
X  SMILES            CACTVS                3.385  "COc1cc2O[CH]3O[CH]([CH](O)[CH]3c2c4OC(=O)C5=C(CCC5=O)c14)[n+]6cn([CH]7C[CH](O)[CH](CO[P](O)(O)=O)O7)c8N=C(N)NC(=O)c68"  
X  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "COc1cc2c(c3c1C4=C(C(=O)CC4)C(=O)O3)[C@@H]5[C@H]([C@@H](O[C@@H]5O2)[n+]6cn(c7c6C(=O)NC(=N7)N)[C@H]8C[C@@H]([C@H](O8)COP(=O)(O)O)O)O"  
X  SMILES            "OpenEye OEToolkits"  1.7.6  "COc1cc2c(c3c1C4=C(C(=O)CC4)C(=O)O3)C5C(C(OC5O2)[n+]6cn(c7c6C(=O)NC(=N7)N)C8CC(C(O8)COP(=O)(O)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          X
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          ACDLabs
_pdbx_chem_comp_identifier.program_version  12.01
_pdbx_chem_comp_identifier.identifier       "2'-deoxy-7-[(6aS,8R,9R,9aR)-9-hydroxy-4-methoxy-1,11-dioxo-1,2,3,6a,8,9,9a,11-octahydrocyclopenta[c]furo[3',2':4,5]furo[2,3-h][1]benzopyran-8-yl]guanosine 5'-(dihydrogen phosphate)"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
X  "Create component"    1999-07-08  RCSB  
X  "Modify descriptor"   2011-06-04  RCSB  
X  "Obsolete component"  2019-01-31  RCSB  
##
