data_02Y
# 
_chem_comp.id                                    02Y 
_chem_comp.name                                  6-diazonio-5-oxo-L-norleucine 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C6 H10 N3 O3" 
_chem_comp.mon_nstd_parent_comp_id               ALA 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2011-07-18 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        172.162 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     02Y 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3S3J 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
02Y N   N   N 0 1 N N N Y Y N 1.321  2.166  -22.870 2.140  1.816  -0.282 N   02Y 1  
02Y CA  CA  C 0 1 N N S Y N N 1.293  1.085  -21.904 2.001  0.523  0.401  CA  02Y 2  
02Y C2  C2  C 0 1 N N N N N N 1.514  -0.226 -22.631 0.679  -0.130 -0.006 C2  02Y 3  
02Y C3  C3  C 0 1 N N N N N N 1.699  0.027  -24.126 -0.488 0.722  0.499  C3  02Y 4  
02Y C4  C4  C 0 1 N N N N N N 1.839  -1.234 -24.997 -1.790 0.079  0.098  C4  02Y 5  
02Y O   O   O 0 1 N N N Y N Y 3.408  1.789  -20.952 3.776  -0.151 -0.994 O   02Y 6  
02Y O2  O2  O 0 1 N N N N N N 2.873  -1.436 -25.636 -1.786 -0.954 -0.528 O2  02Y 7  
02Y C6  C6  C 0 1 N N N N N N 0.682  -2.151 -25.070 -3.098 0.726  0.477  C6  02Y 8  
02Y H   H   H 0 1 N N N Y Y N 0.649  1.989  -23.589 2.974  2.297  0.020  H   02Y 9  
02Y HA  HA  H 0 1 N N N Y N N 0.306  1.067  -21.418 2.012  0.679  1.480  HA  02Y 10 
02Y HB1 HB1 H 0 1 N N N N N N 2.415  -0.715 -22.232 0.630  -0.205 -1.092 HB1 02Y 11 
02Y HB2 HB2 H 0 1 N N N N N N 0.641  -0.877 -22.479 0.616  -1.127 0.430  HB2 02Y 12 
02Y H8  H8  H 0 1 N N N N N N 0.816  0.578  -24.481 -0.439 0.797  1.585  H8  02Y 13 
02Y H9  H9  H 0 1 N N N N N N 2.617  0.620  -24.251 -0.425 1.719  0.063  H9  02Y 14 
02Y N2  N2  N 1 1 N Y N N N N 0.275  -3.348 -25.949 -4.181 -0.068 -0.014 N2  02Y 15 
02Y N3  N3  N 0 1 N Y N N N N 0.131  -4.160 -26.875 -4.965 -0.642 -0.368 N3  02Y 16 
02Y H42 H42 H 0 1 N N N N N N 0.704  -2.611 -24.071 -3.164 0.801  1.562  H42 02Y 17 
02Y H2  H2  H 0 1 N Y N Y Y N 1.100  3.027  -22.413 2.133  1.698  -1.284 H2  02Y 18 
02Y H10 H10 H 0 1 N N N N N N -0.142 -1.448 -25.262 -3.150 1.723  0.040  H10 02Y 19 
02Y C   C1  C 0 1 N N N Y N Y 2.304  1.292  -20.768 3.146  -0.376 0.012  C1  02Y 20 
02Y OXT OXT O 0 1 N Y N Y N Y ?      ?      ?       3.466  -1.427 0.784  OXT 02Y 21 
02Y HXT HXT H 0 1 N Y N Y N Y ?      ?      ?       4.208  -1.975 0.493  HXT 02Y 22 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
02Y N   CA  SING N N 1  
02Y N   H   SING N N 2  
02Y N   H2  SING N N 3  
02Y CA  C   SING N N 4  
02Y CA  HA  SING N N 5  
02Y C2  CA  SING N N 6  
02Y C2  HB1 SING N N 7  
02Y C2  HB2 SING N N 8  
02Y C3  C2  SING N N 9  
02Y C3  H8  SING N N 10 
02Y C3  H9  SING N N 11 
02Y C4  C3  SING N N 12 
02Y O   C   DOUB N N 13 
02Y O2  C4  DOUB N N 14 
02Y C6  C4  SING N N 15 
02Y C6  N2  SING N N 16 
02Y C6  H42 SING N N 17 
02Y N2  N3  TRIP N N 18 
02Y C6  H10 SING N N 19 
02Y C   OXT SING N N 20 
02Y OXT HXT SING N N 21 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
02Y SMILES           ACDLabs              12.01 "O=C(CCC(N)C(=O)O)C[N+]#N"                                                
02Y InChI            InChI                1.03  "InChI=1S/C6H9N3O3/c7-5(6(11)12)2-1-4(10)3-9-8/h5H,1-3,7H2/p+1/t5-/m0/s1" 
02Y InChIKey         InChI                1.03  UUTYCZUIECRVAL-YFKPBYRVSA-O                                               
02Y SMILES_CANONICAL CACTVS               3.370 "N[C@@H](CCC(=O)C[N+]#N)C(O)=O"                                           
02Y SMILES           CACTVS               3.370 "N[CH](CCC(=O)C[N+]#N)C(O)=O"                                             
02Y SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "C(CC(=O)C[N+]#N)[C@@H](C(=O)O)N"                                         
02Y SMILES           "OpenEye OEToolkits" 1.7.2 "C(CC(=O)C[N+]#N)C(C(=O)O)N"                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
02Y "SYSTEMATIC NAME" ACDLabs              12.01 6-diazonio-5-oxo-L-norleucine                                       
02Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "(5S)-5-azanyl-6-oxidanyl-2,6-bis(oxidanylidene)hexane-1-diazonium" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
02Y "Create component" 2011-07-18 RCSB 
02Y "Modify formula"   2011-08-10 RCSB 
02Y "Modify backbone"  2023-11-03 PDBE 
# 
