data_4EY
# 
_chem_comp.id                                    4EY 
_chem_comp.name                                  "3-methanethioyl-1-(5-O-phosphono-beta-D-ribofuranosyl)-5-(sulfanylcarbonyl)pyridin-1-ium" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H15 N O8 P S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "Dithiodinicotinic acid mononucleotide" 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2015-03-13 
_chem_comp.pdbx_modified_date                    2024-04-25 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        396.353 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     4EY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4YNS 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
4EY C2  C1  C 0 1 Y N N N N N -64.377 18.066 -12.432 -1.198 0.527  -0.595 C2  4EY 1  
4EY C3  C2  C 0 1 Y N N N N N -64.282 19.266 -11.774 -2.340 1.330  -0.688 C3  4EY 2  
4EY C1  C3  C 0 1 N N N N N N -60.838 20.203 -12.895 -4.738 -0.848 1.231  C1  4EY 3  
4EY C4  C4  C 0 1 Y N N N N N -63.117 19.982 -11.896 -3.528 0.891  -0.088 C4  4EY 4  
4EY C5  C5  C 0 1 Y N N N N N -62.108 19.462 -12.700 -3.514 -0.335 0.579  C5  4EY 5  
4EY C6  C6  C 0 1 Y N N N N N -62.266 18.256 -13.344 -2.328 -1.072 0.622  C6  4EY 6  
4EY O2  O1  O 0 1 N N N N N N -59.944 19.752 -13.588 -4.717 -1.917 1.810  O2  4EY 7  
4EY O2P O2  O 0 1 N N N N N N -65.716 15.858 -10.223 4.839  2.465  -0.092 O2P 4EY 8  
4EY P   P1  P 0 1 N N N N N N -66.916 15.046 -10.634 5.231  1.117  0.696  P   4EY 9  
4EY O3P O3  O 0 1 N N N N N N -68.225 15.787 -10.596 6.383  0.472  0.027  O3P 4EY 10 
4EY O1P O4  O 0 1 N N N N N N -66.923 13.541 -10.373 5.625  1.478  2.214  O1P 4EY 11 
4EY O5R O5  O 0 1 N N N N N N -66.799 14.791 -12.205 3.976  0.109  0.693  O5R 4EY 12 
4EY C5R C7  C 0 1 N N N N N N -66.814 15.698 -13.292 3.453  -0.480 -0.500 C5R 4EY 13 
4EY C4R C8  C 0 1 N N R N N N -65.659 15.243 -14.168 2.268  -1.381 -0.147 C4R 4EY 14 
4EY O4R O6  O 0 1 N N N N N N -64.886 16.374 -14.493 1.143  -0.586 0.286  O4R 4EY 15 
4EY C3R C9  C 0 1 N N S N N N -64.693 14.282 -13.492 1.765  -2.126 -1.403 C3R 4EY 16 
4EY O3R O7  O 0 1 N N N N N N -64.219 13.343 -14.454 2.296  -3.452 -1.445 O3R 4EY 17 
4EY C2R C10 C 0 1 N N R N N N -63.587 15.169 -12.953 0.230  -2.162 -1.230 C2R 4EY 18 
4EY O2R O8  O 0 1 N N N N N N -62.253 14.682 -13.065 -0.235 -3.511 -1.162 O2R 4EY 19 
4EY C1R C11 C 0 1 N N R N N N -63.603 16.341 -13.868 -0.013 -1.434 0.111  C1R 4EY 20 
4EY N1  N1  N 1 1 Y N N N N N -63.397 17.596 -13.178 -1.233 -0.627 0.040  N1  4EY 21 
4EY C7  C12 C 0 1 N N N N N N -65.416 19.721 -10.913 -2.295 2.613  -1.403 C7  4EY 22 
4EY S7  S1  S 0 1 N N N N N N -65.310 21.121 -10.271 -3.607 3.521  -1.501 S7  4EY 23 
4EY S2  S2  S 0 1 N N N N N N -60.720 21.590 -12.191 -6.228 0.092  1.170  S2  4EY 24 
4EY H1  H1  H 0 1 N N N N N N -65.284 17.488 -12.336 -0.277 0.855  -1.054 H1  4EY 25 
4EY H2  H2  H 0 1 N N N N N N -62.988 20.923 -11.382 -4.428 1.486  -0.139 H2  4EY 26 
4EY H3  H3  H 0 1 N N N N N N -61.482 17.858 -13.971 -2.310 -2.024 1.131  H3  4EY 27 
4EY H4  H4  H 0 1 N N N N N N -65.991 16.739 -9.998  4.089  2.941  0.292  H4  4EY 28 
4EY H5  H5  H 0 1 N N N N N N -67.813 13.252 -10.210 6.376  2.083  2.292  H5  4EY 29 
4EY H6  H6  H 0 1 N N N N N N -66.657 16.729 -12.943 3.122  0.306  -1.178 H6  4EY 30 
4EY H7  H7  H 0 1 N N N N N N -67.767 15.637 -13.839 4.229  -1.074 -0.982 H7  4EY 31 
4EY H8  H8  H 0 1 N N N N N N -66.060 14.771 -15.077 2.551  -2.093 0.628  H8  4EY 32 
4EY H9  H9  H 0 1 N N N N N N -65.200 13.773 -12.659 2.035  -1.577 -2.306 H9  4EY 33 
4EY H10 H10 H 0 1 N N N N N N -63.615 12.740 -14.037 2.012  -3.965 -2.214 H10 4EY 34 
4EY H11 H11 H 0 1 N N N N N N -63.818 15.479 -11.923 -0.259 -1.631 -2.046 H11 4EY 35 
4EY H12 H12 H 0 1 N N N N N N -62.145 13.921 -12.507 -0.053 -4.030 -1.958 H12 4EY 36 
4EY H13 H13 H 0 1 N N N N N N -62.821 16.209 -14.631 -0.082 -2.154 0.928  H13 4EY 37 
4EY H14 H14 H 0 1 N N N N N N -66.279 19.093 -10.746 -1.374 2.943  -1.862 H14 4EY 38 
4EY H15 H15 H 0 1 N N N N N N -59.538 21.982 -12.564 -7.085 -0.761 1.897  H15 4EY 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
4EY O4R C4R SING N N 1  
4EY O4R C1R SING N N 2  
4EY O3R C3R SING N N 3  
4EY C4R C3R SING N N 4  
4EY C4R C5R SING N N 5  
4EY C1R N1  SING N N 6  
4EY C1R C2R SING N N 7  
4EY O2  C1  DOUB N N 8  
4EY C3R C2R SING N N 9  
4EY C6  N1  DOUB Y N 10 
4EY C6  C5  SING Y N 11 
4EY C5R O5R SING N N 12 
4EY N1  C2  SING Y N 13 
4EY O2R C2R SING N N 14 
4EY C1  C5  SING N N 15 
4EY C1  S2  SING N N 16 
4EY C5  C4  DOUB Y N 17 
4EY C2  C3  DOUB Y N 18 
4EY O5R P   SING N N 19 
4EY C4  C3  SING Y N 20 
4EY C3  C7  SING N N 21 
4EY C7  S7  DOUB N N 22 
4EY P   O3P DOUB N N 23 
4EY P   O1P SING N N 24 
4EY P   O2P SING N N 25 
4EY C2  H1  SING N N 26 
4EY C4  H2  SING N N 27 
4EY C6  H3  SING N N 28 
4EY O2P H4  SING N N 29 
4EY O1P H5  SING N N 30 
4EY C5R H6  SING N N 31 
4EY C5R H7  SING N N 32 
4EY C4R H8  SING N N 33 
4EY C3R H9  SING N N 34 
4EY O3R H10 SING N N 35 
4EY C2R H11 SING N N 36 
4EY O2R H12 SING N N 37 
4EY C1R H13 SING N N 38 
4EY C7  H14 SING N N 39 
4EY S2  H15 SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
4EY SMILES           ACDLabs              12.01 "O=C(S)c1cc(c[n+](c1)C1OC(COP(=O)(O)O)C(O)C1O)C=S"                                                                                                                
4EY InChI            InChI                1.06  "InChI=1S/C12H14NO8PS2/c14-9-8(4-20-22(17,18)19)21-11(10(9)15)13-2-6(5-23)1-7(3-13)12(16)24/h1-3,5,8-11,14-15H,4H2,(H2-,16,17,18,19,24)/p+1/t8-,9-,10-,11-/m1/s1" 
4EY InChIKey         InChI                1.06  NSIYRWZYSRADIJ-GWOFURMSSA-O                                                                                                                                       
4EY SMILES_CANONICAL CACTVS               3.385 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)[n+]2cc(C=S)cc(c2)C(S)=O"                                                                                           
4EY SMILES           CACTVS               3.385 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)[n+]2cc(C=S)cc(c2)C(S)=O"                                                                                                  
4EY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(c[n+](cc1C(=O)S)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)C=S"                                                                                            
4EY SMILES           "OpenEye OEToolkits" 2.0.7 "c1c(c[n+](cc1C(=O)S)C2C(C(C(O2)COP(=O)(O)O)O)O)C=S"                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
4EY "SYSTEMATIC NAME" ACDLabs              12.01 "3-methanethioyl-1-(5-O-phosphono-beta-D-ribofuranosyl)-5-(sulfanylcarbonyl)pyridin-1-ium"                                             
4EY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[(2~{R},3~{R},4~{S},5~{R})-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]-5-methanethioyl-pyridin-1-ium-3-carbothioic S-acid" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      4EY 
_pdbx_chem_comp_synonyms.name         "Dithiodinicotinic acid mononucleotide" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
4EY "Create component" 2015-03-13 RCSB 
4EY "Modify synonyms"  2015-04-23 RCSB 
4EY "Initial release"  2015-07-15 RCSB 
4EY "Modify synonyms"  2021-03-01 PDBE 
4EY "Modify charge"    2024-04-25 RCSB 
# 
