data_99Y
# 
_chem_comp.id                                    99Y 
_chem_comp.name                                  4-carboxy-D-phenylalanine 
_chem_comp.type                                  "D-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C10 H11 N O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-04-11 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        209.199 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     99Y 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5TYI 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
99Y CA  C02 C 0 1 N N R Y N N 24.992 -2.623  -11.865 -2.447 -0.042 -0.429 C02 99Y 1  
99Y C03 C03 C 0 1 N N N N N N 24.204 -3.782  -12.422 -1.674 0.220  0.865  C03 99Y 2  
99Y C04 C04 C 0 1 Y N N N N N 24.180 -5.055  -11.601 -0.194 0.176  0.584  C04 99Y 3  
99Y C05 C05 C 0 1 Y N N N N N 23.357 -5.193  -10.490 0.473  1.333  0.221  C05 99Y 4  
99Y C06 C06 C 0 1 Y N N N N N 23.350 -6.397  -9.798  1.827  1.300  -0.038 C06 99Y 5  
99Y C07 C07 C 0 1 Y N N N N N 24.163 -7.448  -10.202 2.525  0.095  0.067  C07 99Y 6  
99Y C08 C08 C 0 1 N N N N N N 24.168 -8.774  -9.465  3.976  0.052  -0.209 C08 99Y 7  
99Y C11 C11 C 0 1 Y N N N N N 24.983 -7.300  -11.302 1.846  -1.069 0.433  C11 99Y 8  
99Y C12 C12 C 0 1 Y N N N N N 24.986 -6.110  -12.006 0.492  -1.020 0.694  C12 99Y 9  
99Y C   C13 C 0 1 N N N Y N Y 25.649 -1.717  -12.876 -3.923 0.123  -0.175 C13 99Y 10 
99Y N   N01 N 0 1 N N N Y Y N 25.915 -3.018  -10.876 -2.180 -1.411 -0.890 N01 99Y 11 
99Y O09 O09 O 0 1 N N N N N N 23.117 -9.174  -8.907  4.646  -1.113 -0.107 O09 99Y 12 
99Y O10 O10 O 0 1 N N N N N N 25.197 -9.500  -9.455  4.564  1.065  -0.527 O10 99Y 13 
99Y O   O14 O 0 1 N N N Y N Y 25.516 -0.555  -12.556 -4.619 -0.850 -0.003 O14 99Y 14 
99Y OXT O1  O 0 1 N Y N Y N Y 25.973 -2.032  -14.127 -4.465 1.350  -0.140 O1  99Y 15 
99Y HA  H1  H 0 1 N N N Y N N 24.249 -1.991  -11.355 -2.128 0.667  -1.193 H1  99Y 16 
99Y H1  H2  H 0 1 N N N N N N 23.164 -3.447  -12.545 -1.941 1.203  1.254  H2  99Y 17 
99Y H3  H3  H 0 1 N N N N N N 24.629 -4.030  -13.406 -1.927 -0.543 1.600  H3  99Y 18 
99Y H4  H4  H 0 1 N N N N N N 22.731 -4.374  -10.169 -0.068 2.264  0.141  H4  99Y 19 
99Y H5  H5  H 0 1 N N N N N N 22.707 -6.517  -8.939  2.347  2.203  -0.321 H5  99Y 20 
99Y H6  H6  H 0 1 N N N N N N 25.622 -8.113  -11.613 2.380  -2.004 0.515  H6  99Y 21 
99Y H7  H7  H 0 1 N N N N N N 25.618 -6.001  -12.875 -0.034 -1.918 0.982  H7  99Y 22 
99Y H   H8  H 0 1 N N N Y Y N 25.461 -3.617  -10.216 -2.467 -2.088 -0.199 H8  99Y 23 
99Y H2  H9  H 0 1 N Y N Y Y N 26.673 -3.509  -11.305 -2.627 -1.589 -1.777 H9  99Y 24 
99Y H11 H11 H 0 1 N N N N N N 23.265 -10.033 -8.530  5.594  -1.091 -0.297 H11 99Y 25 
99Y HXT H12 H 0 1 N Y N Y N Y 26.063 -1.238  -14.641 -5.416 1.406  0.026  H12 99Y 26 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
99Y C   O   DOUB N N 1  
99Y C   CA  SING N N 2  
99Y C03 CA  SING N N 3  
99Y C03 C04 SING N N 4  
99Y C12 C04 DOUB Y N 5  
99Y C12 C11 SING Y N 6  
99Y CA  N   SING N N 7  
99Y C04 C05 SING Y N 8  
99Y C11 C07 DOUB Y N 9  
99Y C05 C06 DOUB Y N 10 
99Y C07 C06 SING Y N 11 
99Y C07 C08 SING N N 12 
99Y C08 O10 DOUB N N 13 
99Y C08 O09 SING N N 14 
99Y C   OXT SING N N 15 
99Y CA  HA  SING N N 16 
99Y C03 H1  SING N N 17 
99Y C03 H3  SING N N 18 
99Y C05 H4  SING N N 19 
99Y C06 H5  SING N N 20 
99Y C11 H6  SING N N 21 
99Y C12 H7  SING N N 22 
99Y N   H   SING N N 23 
99Y N   H2  SING N N 24 
99Y O09 H11 SING N N 25 
99Y OXT HXT SING N N 26 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
99Y SMILES           ACDLabs              12.01 "C(N)(Cc1ccc(C(=O)O)cc1)C(=O)O"                                                                         
99Y InChI            InChI                1.03  "InChI=1S/C10H11NO4/c11-8(10(14)15)5-6-1-3-7(4-2-6)9(12)13/h1-4,8H,5,11H2,(H,12,13)(H,14,15)/t8-/m1/s1" 
99Y InChIKey         InChI                1.03  YXDGRBPZVQPESQ-MRVPVSSYSA-N                                                                             
99Y SMILES_CANONICAL CACTVS               3.385 "N[C@H](Cc1ccc(cc1)C(O)=O)C(O)=O"                                                                       
99Y SMILES           CACTVS               3.385 "N[CH](Cc1ccc(cc1)C(O)=O)C(O)=O"                                                                        
99Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1cc(ccc1C[C@H](C(=O)O)N)C(=O)O"                                                                       
99Y SMILES           "OpenEye OEToolkits" 2.0.6 "c1cc(ccc1CC(C(=O)O)N)C(=O)O"                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
99Y "SYSTEMATIC NAME" ACDLabs              12.01 4-carboxy-D-phenylalanine                                            
99Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "4-[(2~{R})-2-azanyl-3-oxidanyl-3-oxidanylidene-propyl]benzoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
99Y "Create component"    2017-04-11 RCSB 
99Y "Initial release"     2017-11-15 RCSB 
99Y "Modify linking type" 2023-09-05 RCSB 
99Y "Modify backbone"     2023-11-03 PDBE 
# 
