data_6AZ
#

_chem_comp.id                                   6AZ
_chem_comp.name                                 "6-azidouridine 5'-(dihydrogen phosphate)"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C9 H12 N5 O9 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        6-AZIDO-UMP
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-02-16
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       365.193
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    6AZ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2ZZ6
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6AZ  O3P     O3P     O   0  1  N  N  N  24.527  -17.212   7.698  -5.719   0.106   0.030  O3P     6AZ   1  
6AZ  P       P       P   0  1  N  N  N  24.409  -16.297   8.898  -4.685  -0.835   0.519  P       6AZ   2  
6AZ  O1P     O1P     O   0  1  N  N  N  25.712  -15.508   9.122  -5.106  -1.386   1.972  O1P     6AZ   3  
6AZ  O2P     O2P     O   0  1  N  N  N  23.240  -15.320   8.753  -4.556  -2.069  -0.506  O2P     6AZ   4  
6AZ  "O5'"   "O5'"   O   0  1  N  N  N  24.084  -17.192  10.162  -3.271  -0.072   0.623  "O5'"   6AZ   5  
6AZ  "C5'"   "C5'"   C   0  1  N  N  N  25.137  -17.654  11.023  -2.678   0.620  -0.478  "C5'"   6AZ   6  
6AZ  "C4'"   "C4'"   C   0  1  N  N  R  24.414  -18.277  12.219  -1.344   1.228  -0.038  "C4'"   6AZ   7  
6AZ  "C3'"   "C3'"   C   0  1  N  N  S  23.725  -17.331  13.167  -0.744   2.086  -1.174  "C3'"   6AZ   8  
6AZ  "O3'"   "O3'"   O   0  1  N  N  N  22.635  -17.988  13.809  -1.031   3.470  -0.962  "O3'"   6AZ   9  
6AZ  "C2'"   "C2'"   C   0  1  N  N  R  24.835  -16.969  14.171   0.776   1.827  -1.077  "C2'"   6AZ  10  
6AZ  "O2'"   "O2'"   O   0  1  N  N  N  24.321  -16.452  15.355   1.474   3.043  -0.802  "O2'"   6AZ  11  
6AZ  "O4'"   "O4'"   O   0  1  N  N  N  25.373  -18.965  13.084  -0.369   0.188   0.193  "O4'"   6AZ  12  
6AZ  "C1'"   "C1'"   C   0  1  N  N  R  25.521  -18.267  14.363   0.914   0.844   0.106  "C1'"   6AZ  13  
6AZ  N1      N1      N   0  1  N  N  N  26.982  -18.314  14.721   1.970  -0.135  -0.165  N1      6AZ  14  
6AZ  C6      C6      C   0  1  N  N  N  27.447  -18.991  15.916   3.113  -0.154   0.622  C6      6AZ  15  
6AZ  C5      C5      C   0  1  N  N  N  28.777  -19.208  16.081   4.115  -1.109   0.338  C5      6AZ  16  
6AZ  C4      C4      C   0  1  N  N  N  29.721  -18.806  15.109   3.904  -2.007  -0.741  C4      6AZ  17  
6AZ  O4      O4      O   0  1  N  N  N  30.928  -19.011  15.124   4.744  -2.844  -1.016  O4      6AZ  18  
6AZ  N3      N3      N   0  1  N  N  N  29.205  -18.102  13.994   2.768  -1.926  -1.459  N3      6AZ  19  
6AZ  C2      C2      C   0  1  N  N  N  27.906  -17.816  13.755   1.824  -1.014  -1.172  C2      6AZ  20  
6AZ  O2      O2      O   0  1  N  N  N  27.532  -17.207  12.800   0.811  -0.981  -1.844  O2      6AZ  21  
6AZ  N7      N7      N   0  1  N  N  N  26.478  -19.093  16.944   3.261   0.699   1.610  N7      6AZ  22  
6AZ  "H5'"   "H5'"   H   0  1  N  N  N  25.770  -18.395  10.513  -2.506  -0.079  -1.296  "H5'"   6AZ  23  
6AZ  "H5'A"  "H5'A"  H   0  0  N  N  N  25.813  -16.840  11.325  -3.347   1.413  -0.812  "H5'A"  6AZ  24  
6AZ  "H4'"   "H4'"   H   0  1  N  N  N  23.662  -18.911  11.727  -1.480   1.830   0.860  "H4'"   6AZ  25  
6AZ  "H3'"   "H3'"   H   0  1  N  N  N  23.296  -16.445  12.676  -1.128   1.761  -2.142  "H3'"   6AZ  26  
6AZ  "HO3'"  "HO3'"  H   0  0  N  N  N  22.847  -18.134  14.723  -0.678   4.054  -1.647  "HO3'"  6AZ  27  
6AZ  "H2'"   "H2'"   H   0  1  N  N  N  25.509  -16.174  13.817   1.146   1.375  -1.997  "H2'"   6AZ  28  
6AZ  "HO2'"  "HO2'"  H   0  0  N  N  N  24.204  -17.155  15.983   1.371   3.720  -1.486  "HO2'"  6AZ  29  
6AZ  "H1'"   "H1'"   H   0  1  N  N  N  25.046  -18.698  15.257   1.127   1.386   1.027  "H1'"   6AZ  30  
6AZ  H5      H5      H   0  1  N  N  N  29.122  -19.700  16.978   5.019  -1.155   0.928  H5      6AZ  31  
6AZ  HN3     HN3     H   0  1  N  N  N  29.868  -17.785  13.316   2.627  -2.540  -2.196  HN3     6AZ  32  
6AZ  N8      N8      N   1  1  N  N  N  26.157  -20.291  16.944   4.192   0.673   2.240  N8      6AZ  33  
6AZ  N9      N9      N  -1  1  N  N  N  25.836  -21.489  16.944   5.122   0.648   2.870  N9      6AZ  34  
6AZ  H11     H11     H   0  1  N  N  N  26.132  -15.345   8.286  -5.950  -1.857   1.985  H11     6AZ  35  
6AZ  H12     H12     H   0  1  N  N  N  22.888  -15.118   9.612  -3.895  -2.727  -0.248  H12     6AZ  36  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6AZ  O3P    P       DOUB  N  N   1  
6AZ  P      O1P     SING  N  N   2  
6AZ  P      O2P     SING  N  N   3  
6AZ  P      "O5'"   SING  N  N   4  
6AZ  "O5'"  "C5'"   SING  N  N   5  
6AZ  "C5'"  "C4'"   SING  N  N   6  
6AZ  "C5'"  "H5'"   SING  N  N   7  
6AZ  "C5'"  "H5'A"  SING  N  N   8  
6AZ  "C4'"  "C3'"   SING  N  N   9  
6AZ  "C4'"  "O4'"   SING  N  N  10  
6AZ  "C4'"  "H4'"   SING  N  N  11  
6AZ  "C3'"  "O3'"   SING  N  N  12  
6AZ  "C3'"  "C2'"   SING  N  N  13  
6AZ  "C3'"  "H3'"   SING  N  N  14  
6AZ  "O3'"  "HO3'"  SING  N  N  15  
6AZ  "C2'"  "O2'"   SING  N  N  16  
6AZ  "C2'"  "C1'"   SING  N  N  17  
6AZ  "C2'"  "H2'"   SING  N  N  18  
6AZ  "O2'"  "HO2'"  SING  N  N  19  
6AZ  "O4'"  "C1'"   SING  N  N  20  
6AZ  "C1'"  N1      SING  N  N  21  
6AZ  "C1'"  "H1'"   SING  N  N  22  
6AZ  N1     C6      SING  N  N  23  
6AZ  N1     C2      SING  N  N  24  
6AZ  C6     C5      DOUB  N  N  25  
6AZ  C6     N7      SING  N  N  26  
6AZ  C5     C4      SING  N  N  27  
6AZ  C5     H5      SING  N  N  28  
6AZ  C4     O4      DOUB  N  N  29  
6AZ  C4     N3      SING  N  N  30  
6AZ  N3     C2      SING  N  N  31  
6AZ  N3     HN3     SING  N  N  32  
6AZ  C2     O2      DOUB  N  N  33  
6AZ  N7     N8      DOUB  N  N  34  
6AZ  N8     N9      DOUB  N  N  35  
6AZ  O1P    H11     SING  N  N  36  
6AZ  O2P    H12     SING  N  N  37  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6AZ  SMILES            ACDLabs               10.04  "[N-]=[N+]=N\C=1N(C(=O)NC(=O)C=1)C2OC(C(O)C2O)COP(=O)(O)O"  
6AZ  SMILES_CANONICAL  CACTVS                3.341  "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C(=O)NC(=O)C=C2N=[N+]=[N-]"  
6AZ  SMILES            CACTVS                3.341  "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2C(=O)NC(=O)C=C2N=[N+]=[N-]"  
6AZ  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C1=C(N(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)N=[N+]=[N-]"  
6AZ  SMILES            "OpenEye OEToolkits"  1.5.0  "C1=C(N(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)O)O)O)N=[N+]=[N-]"  
6AZ  InChI             InChI                 1.03   "InChI=1S/C9H12N5O9P/c10-13-12-4-1-5(15)11-9(18)14(4)8-7(17)6(16)3(23-8)2-22-24(19,20)21/h1,3,6-8,16-17H,2H2,(H,11,15,18)(H2,19,20,21)/t3-,6-,7-,8-/m1/s1"  
6AZ  InChIKey          InChI                 1.03   GBBWDDPNGBRVEX-YXZULKJRSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
6AZ  "SYSTEMATIC NAME"  ACDLabs               10.04  "6-azidouridine 5'-(dihydrogen phosphate)"  
6AZ  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3S,4R,5R)-5-(6-azido-2,4-dioxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6AZ  "Create component"   2009-02-16  PDBJ  
6AZ  "Modify descriptor"  2011-06-04  RCSB  
6AZ  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     6AZ
_pdbx_chem_comp_synonyms.name        6-AZIDO-UMP
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
