data_SMZ
#

_chem_comp.id                                   SMZ
_chem_comp.name                                 "N~5~-[(E)-imino(methylsulfanyl)methyl]-L-ornithine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C7 H15 N3 O2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        S-methyl-L-thiocitrulline
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2008-01-15
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       205.278
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    SMZ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3BPB
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SMZ  C8    C8    C  0  1  N  N  N  17.004  45.629  -13.658   5.715   0.502  -0.249  C8    SMZ   1  
SMZ  S1    S1    S  0  1  N  N  N  17.037  47.240  -14.538   4.472  -0.663   0.361  S1    SMZ   2  
SMZ  C2    C2    C  0  1  N  N  S  21.898  48.838  -11.123  -3.169  -0.502   0.337  C2    SMZ   3  
SMZ  O2    O2    O  0  1  N  N  N  23.680  50.372  -11.069  -4.803   1.250   0.937  O2    SMZ   4  
SMZ  C4    C4    C  0  1  N  N  N  20.675  49.003  -13.357  -0.672  -0.437   0.284  C4    SMZ   5  
SMZ  C5    C5    C  0  1  N  N  N  19.960  47.654  -13.502   0.548   0.380  -0.147  C5    SMZ   6  
SMZ  O1    O1    O  0  1  N  N  N  23.694  48.844  -12.700  -5.088   0.067  -0.908  O1    SMZ   7  
SMZ  C1    C1    C  0  1  N  N  N  23.194  49.393  -11.684  -4.423   0.292   0.076  C1    SMZ   8  
SMZ  N2    N2    N  0  1  N  N  N  21.852  49.223   -9.701  -3.215  -1.755  -0.429  N2    SMZ   9  
SMZ  C3    C3    C  0  1  N  N  N  20.733  49.476  -11.894  -1.950   0.315  -0.094  C3    SMZ  10  
SMZ  N6    N6    N  0  1  N  N  N  19.735  47.416  -14.928   1.771  -0.341   0.216  N6    SMZ  11  
SMZ  C7    C7    C  0  1  N  N  N  18.541  47.246  -15.461   3.001   0.203  -0.074  C7    SMZ  12  
SMZ  N8    N8    N  0  1  N  N  N  18.491  47.045  -16.758   3.078   1.360  -0.672  N8    SMZ  13  
SMZ  H8    H8    H  0  1  N  N  N  16.997  44.810  -14.392   5.585   0.642  -1.322  H8    SMZ  14  
SMZ  H8A   H8A   H  0  1  N  N  N  17.895  45.542  -13.019   5.597   1.458   0.259  H8A   SMZ  15  
SMZ  H8B   H8B   H  0  1  N  N  N  16.099  45.570  -13.035   6.711   0.106  -0.053  H8B   SMZ  16  
SMZ  H2    H2    H  0  1  N  N  N  21.830  47.744  -11.221  -3.097  -0.729   1.401  H2    SMZ  17  
SMZ  HO2   HO2   H  0  1  N  N  N  24.489  50.640  -11.488  -5.614   1.732   0.727  HO2   SMZ  18  
SMZ  H4    H4    H  0  1  N  N  N  21.704  48.896  -13.732  -0.658  -1.404  -0.218  H4    SMZ  19  
SMZ  H4A   H4A   H  0  1  N  N  N  20.109  49.750  -13.933  -0.646  -0.588   1.363  H4A   SMZ  20  
SMZ  H5    H5    H  0  1  N  N  N  20.582  46.851  -13.080   0.521   0.530  -1.226  H5    SMZ  21  
SMZ  H5A   H5A   H  0  1  N  N  N  19.003  47.668  -12.961   0.533   1.347   0.356  H5A   SMZ  22  
SMZ  HN2   HN2   H  0  1  N  N  N  21.842  48.400   -9.133  -3.975  -2.341  -0.117  HN2   SMZ  23  
SMZ  HN2A  HN2A  H  0  0  N  N  N  22.658  49.772   -9.478  -3.282  -1.571  -1.419  HN2A  SMZ  24  
SMZ  H3    H3    H  0  1  N  N  N  19.791  49.198  -11.398  -1.976   0.466  -1.173  H3    SMZ  25  
SMZ  H3A   H3A   H  0  1  N  N  N  20.884  50.566  -11.896  -1.964   1.282   0.408  H3A   SMZ  26  
SMZ  HN6   HN6   H  0  1  N  N  N  20.531  47.380  -15.532   1.713  -1.201   0.660  HN6   SMZ  27  
SMZ  HN8   HN8   H  0  1  N  N  N  17.526  46.927  -16.993   3.945   1.743  -0.877  HN8   SMZ  28  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SMZ  S1  C8    SING  N  N   1  
SMZ  C8  H8    SING  N  N   2  
SMZ  C8  H8A   SING  N  N   3  
SMZ  C8  H8B   SING  N  N   4  
SMZ  C7  S1    SING  N  N   5  
SMZ  C3  C2    SING  N  N   6  
SMZ  C1  C2    SING  N  N   7  
SMZ  C2  N2    SING  N  N   8  
SMZ  C2  H2    SING  N  N   9  
SMZ  C1  O2    SING  N  N  10  
SMZ  O2  HO2   SING  N  N  11  
SMZ  C5  C4    SING  N  N  12  
SMZ  C4  C3    SING  N  N  13  
SMZ  C4  H4    SING  N  N  14  
SMZ  C4  H4A   SING  N  N  15  
SMZ  N6  C5    SING  N  N  16  
SMZ  C5  H5    SING  N  N  17  
SMZ  C5  H5A   SING  N  N  18  
SMZ  O1  C1    DOUB  N  N  19  
SMZ  N2  HN2   SING  N  N  20  
SMZ  N2  HN2A  SING  N  N  21  
SMZ  C3  H3    SING  N  N  22  
SMZ  C3  H3A   SING  N  N  23  
SMZ  C7  N6    SING  N  N  24  
SMZ  N6  HN6   SING  N  N  25  
SMZ  N8  C7    DOUB  N  N  26  
SMZ  N8  HN8   SING  N  N  27  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SMZ  SMILES            ACDLabs               10.04  "O=C(O)C(N)CCCNC(=[N@H])SC"  
SMZ  SMILES_CANONICAL  CACTVS                3.341  "CSC(=N)NCCC[C@H](N)C(O)=O"  
SMZ  SMILES            CACTVS                3.341  "CSC(=N)NCCC[CH](N)C(O)=O"  
SMZ  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "[H]/N=C(/NCCC[C@@H](C(=O)O)N)\SC"  
SMZ  SMILES            "OpenEye OEToolkits"  1.5.0  "[H]N=C(NCCCC(C(=O)O)N)SC"  
SMZ  InChI             InChI                 1.03   "InChI=1S/C7H15N3O2S/c1-13-7(9)10-4-2-3-5(8)6(11)12/h5H,2-4,8H2,1H3,(H2,9,10)(H,11,12)/t5-/m0/s1"  
SMZ  InChIKey          InChI                 1.03   NGVMVBQRKZPFLB-YFKPBYRVSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SMZ  "SYSTEMATIC NAME"  ACDLabs               10.04  "N~5~-[(Z)-imino(methylsulfanyl)methyl]-L-ornithine"  
SMZ  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2S)-2-amino-5-[(methylsulfanylcarbonimidoyl)amino]pentanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SMZ  "Create component"   2008-01-15  RCSB  
SMZ  "Modify descriptor"  2011-06-04  RCSB  
SMZ  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     SMZ
_pdbx_chem_comp_synonyms.name        S-methyl-L-thiocitrulline
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
