data_VSZ
# 
_chem_comp.id                                    VSZ 
_chem_comp.name                                  "Cystargolide A (bound)" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H32 N2 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "(2S,3S)-2-[[(2S)-2-[[(2R,3S)-3-methanoyl-4-methyl-2-oxidanyl-pentanoyl]amino]-3-methyl-butanoyl]amino]-3-methyl-pentanoic acid" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-03-31 
_chem_comp.pdbx_modified_date                    2023-12-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        372.456 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VSZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8OLR 
_chem_comp.pdbx_subcomponent_list                "V08 VAL ILE" 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VSZ C9  C11 C 0 1 N N R N N N 63.408 -137.505 41.556 3.512  0.034  1.334  C4   V08 1  
VSZ C4  C1  C 0 1 N N S N N N 63.050 -136.273 42.350 4.111  -0.528 0.043  C7   V08 2  
VSZ C5  C2  C 0 1 N N N N N N 64.111 -135.209 42.172 5.320  -1.403 0.381  C8   V08 3  
VSZ O12 O3  O 0 1 N N N N N N 61.245 -138.268 40.977 2.199  1.991  1.203  O8   V08 4  
VSZ C11 C12 C 0 1 N N N N N N 62.244 -138.458 41.645 2.251  0.794  1.013  C3   V08 5  
VSZ O10 O2  O 0 1 N N N N N N 64.553 -138.060 42.140 4.453  0.913  1.953  O5   V08 6  
VSZ C6  C3  C 0 1 N N N N N N 64.385 -134.992 40.710 4.878  -2.557 1.283  C37  V08 7  
VSZ C7  C4  C 0 1 N N N N N N 63.554 -133.930 42.721 5.919  -1.965 -0.909 C9   V08 8  
VSZ C1  C10 C 0 1 N N N N N N 63.060 -136.648 43.792 4.546  0.609  -0.845 C16  V08 9  
VSZ O3  O1  O 0 1 N N N N N N 62.095 -136.451 44.511 4.065  0.733  -1.946 O17  V08 10 
VSZ N13 N1  N 0 1 N N N N N N 62.357 -139.468 42.486 1.181  0.145  0.514  N    VAL 11 
VSZ C14 C13 C 0 1 N N S N N N 61.269 -140.403 42.660 -0.045 0.883  0.201  CA   VAL 12 
VSZ C18 C15 C 0 1 N N N N N N 60.798 -140.212 44.048 -1.225 -0.052 0.260  C    VAL 13 
VSZ O19 O4  O 0 1 N N N N N N 61.565 -140.231 44.979 -1.046 -1.248 0.363  O    VAL 14 
VSZ C15 C5  C 0 1 N N N N N N 61.741 -141.831 42.532 0.063  1.480  -1.203 CB   VAL 15 
VSZ C17 C6  C 0 1 N N N N N N 60.526 -142.716 42.650 1.164  2.543  -1.222 CG1  VAL 16 
VSZ C16 C14 C 0 1 N N N N N N 62.363 -142.043 41.175 0.405  0.374  -2.203 CG2  VAL 17 
VSZ N20 N2  N 0 1 N N N N N N 59.531 -140.005 44.180 -2.478 0.439  0.198  N    ILE 18 
VSZ C21 C7  C 0 1 N N S N N N 58.977 -139.777 45.490 -3.625 -0.459 0.354  CA   ILE 19 
VSZ C25 C16 C 0 1 N N N N N N 58.056 -140.909 45.751 -3.959 -1.084 -0.976 C    ILE 20 
VSZ O26 O5  O 0 1 N N N N N N 57.271 -141.176 44.837 -3.306 -0.808 -1.954 O    ILE 21 
VSZ C22 C8  C 0 1 N N S N N N 58.173 -138.489 45.415 -4.830 0.336  0.860  CB   ILE 22 
VSZ C23 C17 C 0 1 N N N N N N 57.324 -138.314 46.651 -5.991 -0.620 1.142  CG1  ILE 23 
VSZ C24 C9  C 0 1 N N N N N N 57.304 -138.554 44.179 -5.254 1.352  -0.203 CG2  ILE 24 
VSZ C42 C18 C 0 1 N N N N N N 55.907 -138.789 46.391 -7.152 0.157  1.765  CD1  ILE 25 
VSZ O27 O6  O 0 1 N N N N N N 58.152 -141.488 46.841 -4.982 -1.948 -1.074 OXT  ILE 26 
VSZ H19 H19 H 0 1 N N N N N N 63.586 -137.232 40.505 3.278  -0.786 2.013  H1   V08 27 
VSZ H1  H1  H 0 1 N N N N N N 62.063 -135.890 42.050 3.362  -1.128 -0.474 H2   V08 28 
VSZ H2  H2  H 0 1 N N N N N N 65.033 -135.491 42.702 6.069  -0.804 0.899  H3   V08 29 
VSZ H20 H20 H 0 1 N N N N N N 65.273 -137.444 42.073 4.707  1.667  1.404  H5   V08 30 
VSZ H3  H3  H 0 1 N N N N N N 65.157 -134.217 40.592 5.739  -3.180 1.524  H6   V08 31 
VSZ H4  H4  H 0 1 N N N N N N 64.737 -135.932 40.260 4.451  -2.157 2.203  H7   V08 32 
VSZ H5  H5  H 0 1 N N N N N N 63.461 -134.668 40.208 4.129  -3.157 0.766  H8   V08 33 
VSZ H6  H6  H 0 1 N N N N N N 63.341 -134.053 43.793 6.234  -1.143 -1.552 H9   V08 34 
VSZ H7  H7  H 0 1 N N N N N N 64.287 -133.122 42.583 6.780  -2.589 -0.669 H10  V08 35 
VSZ H8  H8  H 0 1 N N N N N N 62.625 -133.677 42.189 5.170  -2.565 -1.427 H11  V08 36 
VSZ H18 H18 H 0 1 N N N N N N 63.944 -137.106 44.211 5.288  1.312  -0.498 H12  V08 37 
VSZ H21 H21 H 0 1 N N N N N N 63.202 -139.588 43.007 1.222  -0.813 0.361  H    VAL 38 
VSZ H22 H22 H 0 1 N N N N N N 60.457 -140.205 41.944 -0.181 1.685  0.928  HA   VAL 39 
VSZ H9  H9  H 0 1 N N N N N N 62.465 -142.067 43.326 -0.888 1.938  -1.478 HB   VAL 40 
VSZ H10 H10 H 0 1 N N N N N N 60.061 -142.572 43.636 2.107  2.095  -0.909 HG11 VAL 41 
VSZ H11 H11 H 0 1 N N N N N N 59.804 -142.454 41.863 1.268  2.940  -2.232 HG12 VAL 42 
VSZ H12 H12 H 0 1 N N N N N N 60.826 -143.768 42.537 0.901  3.351  -0.539 HG13 VAL 43 
VSZ H23 H23 H 0 1 N N N N N N 63.252 -141.403 41.074 1.355  -0.083 -1.928 HG21 VAL 44 
VSZ H24 H24 H 0 1 N N N N N N 62.657 -143.098 41.067 -0.380 -0.383 -2.189 HG22 VAL 45 
VSZ H25 H25 H 0 1 N N N N N N 61.634 -141.784 40.393 0.482  0.799  -3.203 HG23 VAL 46 
VSZ H26 H26 H 0 1 N N N N N N 58.936 -140.003 43.376 -2.621 1.387  0.049  H    ILE 47 
VSZ H13 H13 H 0 1 N N N N N N 59.757 -139.707 46.262 -3.379 -1.242 1.072  HA   ILE 48 
VSZ H14 H14 H 0 1 N N N N N N 58.864 -137.638 45.327 -4.561 0.860  1.777  HB   ILE 49 
VSZ H28 H28 H 0 1 N N N N N N 57.757 -138.900 47.474 -6.319 -1.079 0.209  HG12 ILE 50 
VSZ H29 H29 H 0 1 N N N N N N 57.304 -137.250 46.929 -5.662 -1.397 1.832  HG13 ILE 51 
VSZ H15 H15 H 0 1 N N N N N N 56.709 -137.632 44.099 -5.523 0.828  -1.119 HG21 ILE 52 
VSZ H16 H16 H 0 1 N N N N N N 57.941 -138.658 43.288 -6.112 1.919  0.158  HG22 ILE 53 
VSZ H17 H17 H 0 1 N N N N N N 56.630 -139.420 44.250 -4.427 2.033  -0.403 HG23 ILE 54 
VSZ H30 H30 H 0 1 N N N N N N 55.302 -138.655 47.300 -6.824 0.615  2.698  HD11 ILE 55 
VSZ H31 H31 H 0 1 N N N N N N 55.469 -138.203 45.570 -7.481 0.934  1.075  HD12 ILE 56 
VSZ H32 H32 H 0 1 N N N N N N 55.922 -139.854 46.115 -7.979 -0.525 1.966  HD13 ILE 57 
VSZ H27 H27 H 0 1 N N N N N N 57.516 -142.193 46.883 -5.158 -2.323 -1.948 HXT  ILE 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VSZ C6  C5  SING N N 1  
VSZ O12 C11 DOUB N N 2  
VSZ C16 C15 SING N N 3  
VSZ C9  C11 SING N N 4  
VSZ C9  O10 SING N N 5  
VSZ C9  C4  SING N N 6  
VSZ C11 N13 SING N N 7  
VSZ C5  C4  SING N N 8  
VSZ C5  C7  SING N N 9  
VSZ C4  C1  SING N N 10 
VSZ N13 C14 SING N N 11 
VSZ C15 C17 SING N N 12 
VSZ C15 C14 SING N N 13 
VSZ C14 C18 SING N N 14 
VSZ C1  O3  DOUB N N 15 
VSZ C18 N20 SING N N 16 
VSZ C18 O19 DOUB N N 17 
VSZ C24 C22 SING N N 18 
VSZ N20 C21 SING N N 19 
VSZ O26 C25 DOUB N N 20 
VSZ C22 C21 SING N N 21 
VSZ C22 C23 SING N N 22 
VSZ C21 C25 SING N N 23 
VSZ C25 O27 SING N N 24 
VSZ C42 C23 SING N N 25 
VSZ C4  H1  SING N N 26 
VSZ C5  H2  SING N N 27 
VSZ C6  H3  SING N N 28 
VSZ C6  H4  SING N N 29 
VSZ C6  H5  SING N N 30 
VSZ C7  H6  SING N N 31 
VSZ C7  H7  SING N N 32 
VSZ C7  H8  SING N N 33 
VSZ C15 H9  SING N N 34 
VSZ C17 H10 SING N N 35 
VSZ C17 H11 SING N N 36 
VSZ C17 H12 SING N N 37 
VSZ C21 H13 SING N N 38 
VSZ C22 H14 SING N N 39 
VSZ C24 H15 SING N N 40 
VSZ C24 H16 SING N N 41 
VSZ C24 H17 SING N N 42 
VSZ C1  H18 SING N N 43 
VSZ C9  H19 SING N N 44 
VSZ O10 H20 SING N N 45 
VSZ N13 H21 SING N N 46 
VSZ C14 H22 SING N N 47 
VSZ C16 H23 SING N N 48 
VSZ C16 H24 SING N N 49 
VSZ C16 H25 SING N N 50 
VSZ N20 H26 SING N N 51 
VSZ O27 H27 SING N N 52 
VSZ C23 H28 SING N N 53 
VSZ C23 H29 SING N N 54 
VSZ C42 H30 SING N N 55 
VSZ C42 H31 SING N N 56 
VSZ C42 H32 SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VSZ InChI            InChI                1.06  "InChI=1S/C18H32N2O6/c1-7-11(6)14(18(25)26)20-16(23)13(10(4)5)19-17(24)15(22)12(8-21)9(2)3/h8-15,22H,7H2,1-6H3,(H,19,24)(H,20,23)(H,25,26)/t11-,12-,13-,14-,15+/m0/s1" 
VSZ InChIKey         InChI                1.06  NPCIMWWVLQVJPA-YYFQZIEXSA-N                                                                                                                                            
VSZ SMILES_CANONICAL CACTVS               3.385 "CC[C@H](C)[C@H](NC(=O)[C@@H](NC(=O)[C@H](O)[C@@H](C=O)C(C)C)C(C)C)C(O)=O"                                                                                             
VSZ SMILES           CACTVS               3.385 "CC[CH](C)[CH](NC(=O)[CH](NC(=O)[CH](O)[CH](C=O)C(C)C)C(C)C)C(O)=O"                                                                                                    
VSZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@H](C)[C@@H](C(=O)O)NC(=O)[C@H](C(C)C)NC(=O)[C@@H]([C@@H](C=O)C(C)C)O"                                                                                            
VSZ SMILES           "OpenEye OEToolkits" 2.0.7 "CCC(C)C(C(=O)O)NC(=O)C(C(C)C)NC(=O)C(C(C=O)C(C)C)O"                                                                                                                   
# 
_pdbx_chem_comp_identifier.comp_id           VSZ 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S},3~{S})-2-[[(2~{S})-2-[[(2~{R},3~{S})-3-methanoyl-4-methyl-2-oxidanyl-pentanoyl]amino]-3-methyl-butanoyl]amino]-3-methyl-pentanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VSZ "Create component"         2023-03-31 PDBE 
VSZ "Modify name"              2023-11-01 PDBE 
VSZ "Modify subcomponent list" 2023-11-02 PDBE 
VSZ "Initial release"          2023-12-06 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      VSZ 
_pdbx_chem_comp_synonyms.name         "(2S,3S)-2-[[(2S)-2-[[(2R,3S)-3-methanoyl-4-methyl-2-oxidanyl-pentanoyl]amino]-3-methyl-butanoyl]amino]-3-methyl-pentanoic acid" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
