data_X1Z
# 
_chem_comp.id                                    X1Z 
_chem_comp.name                                  "~{N}-[(1~{R})-1-cyclohexyl-2-[[(2~{R})-3-methoxy-1-oxidanylidene-1-[[1-[(1~{S})-1-oxidanyl-2-oxidanylidene-2-(1,3-thiazol-2-ylmethylamino)ethyl]cyclobutyl]amino]propan-2-yl]amino]-2-oxidanylidene-ethyl]-4,4-bis(fluoranyl)cyclohexane-1-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H43 F2 N5 O6 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-19 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        627.743 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X1Z 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8WTI 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X1Z C10 C1  C 0 1 N N N N N N 26.905 -1.316 26.583 1.897  -0.059 -1.805 C10 X1Z 1  
X1Z C13 C2  C 0 1 N N N N N N 25.823 -2.454 24.081 0.392  1.880  -3.404 C13 X1Z 2  
X1Z C15 C3  C 0 1 N N N N N N 25.397 -1.336 26.325 0.653  -0.469 -2.595 C15 X1Z 3  
X1Z C21 C4  C 0 1 N N N N N N 30.437 -2.038 32.702 -1.415 -4.101 3.145  C21 X1Z 4  
X1Z C22 C5  C 0 1 N N N N N N 26.443 -1.964 31.738 -2.727 -1.509 0.179  C22 X1Z 5  
X1Z C24 C6  C 0 1 N N N N N N 25.296 -4.133 30.922 -5.151 -1.605 -0.049 C24 X1Z 6  
X1Z C02 C7  C 0 1 N N N N N N 25.910 5.100  23.508 8.406  0.347  0.525  C02 X1Z 7  
X1Z C04 C8  C 0 1 N N N N N N 26.582 5.575  24.796 8.172  -1.163 0.603  C04 X1Z 8  
X1Z C05 C9  C 0 1 N N N N N N 27.413 4.507  25.484 6.885  -1.519 -0.145 C05 X1Z 9  
X1Z C06 C10 C 0 1 N N N N N N 26.583 3.237  25.652 5.704  -0.786 0.496  C06 X1Z 10 
X1Z C07 C11 C 0 1 N N N N N N 27.439 2.081  26.172 4.437  -1.137 -0.240 C07 X1Z 11 
X1Z C09 C12 C 0 1 N N R N N N 27.306 -0.139 27.460 2.029  -0.946 -0.565 C09 X1Z 12 
X1Z C11 C13 C 0 1 N N N N N N 27.731 -1.281 25.291 1.768  1.403  -1.374 C11 X1Z 13 
X1Z C12 C14 C 0 1 N N N N N N 27.333 -2.400 24.319 1.636  2.290  -2.613 C12 X1Z 14 
X1Z C14 C15 C 0 1 N N N N N N 25.025 -2.482 25.380 0.521  0.418  -3.835 C14 X1Z 15 
X1Z C16 C16 C 0 1 N N N N N N 26.811 -0.261 28.900 0.845  -0.725 0.340  C16 X1Z 16 
X1Z C18 C17 C 0 1 N N R N N N 27.301 -0.793 31.306 -1.488 -1.100 0.934  C18 X1Z 17 
X1Z C19 C18 C 0 1 N N N N N N 28.554 -0.738 32.173 -1.412 -1.878 2.249  C19 X1Z 18 
X1Z C25 C19 C 0 1 N N S N N N 23.950 -3.928 30.341 -6.333 -0.641 0.076  C25 X1Z 19 
X1Z C27 C20 C 0 1 N N N N N N 23.114 -2.770 30.932 -5.922 0.724  -0.415 C27 X1Z 20 
X1Z C29 C21 C 0 1 N N N N N N 21.583 -0.840 30.345 -4.589 2.754  -0.216 C29 X1Z 21 
X1Z C30 C22 C 0 1 Y N N N N N 21.978 0.431  31.053 -3.380 3.228  0.547  C30 X1Z 22 
X1Z C32 C23 C 0 1 Y N N N N N 21.575 2.532  31.955 -1.215 3.482  0.995  C32 X1Z 23 
X1Z C33 C24 C 0 1 Y N N N N N 22.934 2.313  32.232 -1.670 4.173  2.045  C33 X1Z 24 
X1Z C36 C25 C 0 1 N N N N N N 25.986 -5.362 30.388 -4.914 -2.106 -1.483 C36 X1Z 25 
X1Z C37 C26 C 0 1 N N N N N N 26.410 -5.713 31.797 -4.619 -3.484 -0.868 C37 X1Z 26 
X1Z C38 C27 C 0 1 N N N N N N 25.335 -4.775 32.293 -5.500 -3.057 0.317  C38 X1Z 27 
X1Z C42 C28 C 0 1 N N N N N N 25.998 2.735  24.329 5.938  0.724  0.418  C42 X1Z 28 
X1Z C43 C29 C 0 1 N N N N N N 25.154 3.783  23.639 7.225  1.080  1.165  C43 X1Z 29 
X1Z F01 F1  F 0 1 N N N N N N 26.859 4.897  22.551 8.522  0.732  -0.815 F01 X1Z 30 
X1Z F03 F2  F 0 1 N N N N N N 25.075 6.055  23.052 9.582  0.673  1.208  F03 X1Z 31 
X1Z N08 N1  N 0 1 N N N N N N 26.723 1.064  26.913 3.261  -0.605 0.150  N08 X1Z 32 
X1Z N17 N2  N 0 1 N N N N N N 27.709 -0.792 29.907 -0.304 -1.395 0.123  N17 X1Z 33 
X1Z N23 N3  N 0 1 N N N N N N 26.112 -2.941 30.717 -3.940 -1.108 0.609  N23 X1Z 34 
X1Z N28 N4  N 0 1 N N N N N N 22.553 -1.848 29.967 -4.930 1.393  0.205  N28 X1Z 35 
X1Z N31 N5  N 0 1 Y N N N N N 21.008 1.381  31.245 -2.156 2.991  0.214  N31 X1Z 36 
X1Z O20 O1  O 0 1 N N N N N N 29.268 -1.917 31.931 -1.478 -3.280 1.978  O20 X1Z 37 
X1Z O26 O2  O 0 1 N N N N N N 24.139 -3.528 29.002 -7.425 -1.122 -0.711 O26 X1Z 38 
X1Z O35 O3  O 0 1 N N N N N N 22.928 -2.634 32.088 -6.485 1.220  -1.368 O35 X1Z 39 
X1Z O39 O4  O 0 1 N N N N N N 26.083 -2.011 32.867 -2.633 -2.198 -0.814 O39 X1Z 40 
X1Z O40 O5  O 0 1 N N N N N N 25.720 0.106  29.224 0.926  0.057  1.264  O40 X1Z 41 
X1Z O41 O6  O 0 1 N N N N N N 28.611 1.991  25.950 4.474  -1.898 -1.184 O41 X1Z 42 
X1Z S34 S1  S 0 1 Y N N N N N 23.416 0.873  31.674 -3.431 4.165  1.977  S34 X1Z 43 
X1Z H1  H1  H 0 1 N N N N N N 27.165 -2.240 27.120 2.781  -0.176 -2.431 H1  X1Z 44 
X1Z H2  H2  H 0 1 N N N N N N 25.525 -1.566 23.504 -0.492 1.997  -2.777 H2  X1Z 45 
X1Z H3  H3  H 0 1 N N N N N N 25.589 -3.361 23.505 0.298  2.512  -4.287 H3  X1Z 46 
X1Z H4  H4  H 0 1 N N N N N N 25.096 -0.381 25.870 0.745  -1.511 -2.902 H4  X1Z 47 
X1Z H5  H5  H 0 1 N N N N N N 24.869 -1.470 27.281 -0.231 -0.352 -1.968 H5  X1Z 48 
X1Z H6  H6  H 0 1 N N N N N N 30.942 -2.984 32.458 -0.475 -3.919 3.667  H6  X1Z 49 
X1Z H7  H7  H 0 1 N N N N N N 31.110 -1.196 32.482 -2.249 -3.861 3.804  H7  X1Z 50 
X1Z H8  H8  H 0 1 N N N N N N 30.174 -2.028 33.770 -1.471 -5.150 2.855  H8  X1Z 51 
X1Z H9  H9  H 0 1 N N N N N N 27.240 6.422  24.552 9.013  -1.685 0.147  H9  X1Z 52 
X1Z H10 H10 H 0 1 N N N N N N 25.799 5.908  25.493 8.081  -1.463 1.647  H10 X1Z 53 
X1Z H11 H11 H 0 1 N N N N N N 28.301 4.285  24.874 6.976  -1.219 -1.188 H11 X1Z 54 
X1Z H12 H12 H 0 1 N N N N N N 27.729 4.871  26.473 6.719  -2.595 -0.089 H12 X1Z 55 
X1Z H13 H13 H 0 1 N N N N N N 25.764 3.429  26.361 5.613  -1.087 1.540  H13 X1Z 56 
X1Z H14 H14 H 0 1 N N N N N N 28.403 -0.056 27.467 2.063  -1.992 -0.869 H14 X1Z 57 
X1Z H15 H15 H 0 1 N N N N N N 28.795 -1.396 25.547 0.884  1.521  -0.747 H15 X1Z 58 
X1Z H16 H16 H 0 1 N N N N N N 27.575 -0.311 24.797 2.654  1.696  -0.810 H16 X1Z 59 
X1Z H17 H17 H 0 1 N N N N N N 27.660 -3.364 24.737 2.520  2.173  -3.240 H17 X1Z 60 
X1Z H18 H18 H 0 1 N N N N N N 27.837 -2.228 23.356 1.544  3.332  -2.306 H18 X1Z 61 
X1Z H19 H19 H 0 1 N N N N N N 23.955 -2.405 25.138 -0.365 0.125  -4.398 H19 X1Z 62 
X1Z H20 H20 H 0 1 N N N N N N 25.218 -3.437 25.891 1.405  0.301  -4.462 H20 X1Z 63 
X1Z H21 H21 H 0 1 N N N N N N 26.728 0.126  31.498 -1.527 -0.032 1.145  H21 X1Z 64 
X1Z H22 H22 H 0 1 N N N N N N 29.164 0.136  31.901 -0.472 -1.650 2.752  H22 X1Z 65 
X1Z H23 H23 H 0 1 N N N N N N 28.276 -0.675 33.236 -2.246 -1.592 2.889  H23 X1Z 66 
X1Z H24 H24 H 0 1 N N N N N N 23.368 -4.860 30.398 -6.639 -0.574 1.120  H24 X1Z 67 
X1Z H25 H25 H 0 1 N N N N N N 21.084 -0.531 29.415 -5.430 3.418  -0.015 H25 X1Z 68 
X1Z H26 H26 H 0 1 N N N N N N 20.857 -1.343 31.001 -4.370 2.759  -1.284 H26 X1Z 69 
X1Z H27 H27 H 0 1 N N N N N N 21.026 3.421  32.226 -0.162 3.336  0.804  H27 X1Z 70 
X1Z H28 H28 H 0 1 N N N N N N 23.573 3.013  32.749 -1.066 4.652  2.800  H28 X1Z 71 
X1Z H29 H29 H 0 1 N N N N N N 25.309 -6.095 29.924 -5.809 -2.088 -2.105 H29 X1Z 72 
X1Z H30 H30 H 0 1 N N N N N N 26.821 -5.150 29.704 -4.051 -1.650 -1.968 H30 X1Z 73 
X1Z H31 H31 H 0 1 N N N N N N 26.259 -6.768 32.071 -5.030 -4.315 -1.441 H31 X1Z 74 
X1Z H32 H32 H 0 1 N N N N N N 27.436 -5.411 32.055 -3.571 -3.629 -0.604 H32 X1Z 75 
X1Z H33 H33 H 0 1 N N N N N N 25.659 -4.101 33.099 -5.109 -3.369 1.286  H33 X1Z 76 
X1Z H34 H34 H 0 1 N N N N N N 24.399 -5.274 32.586 -6.555 -3.299 0.187  H34 X1Z 77 
X1Z H35 H35 H 0 1 N N N N N N 25.372 1.854  24.531 6.029  1.024  -0.626 H35 X1Z 78 
X1Z H36 H36 H 0 1 N N N N N N 26.825 2.452  23.662 5.097  1.245  0.874  H36 X1Z 79 
X1Z H37 H37 H 0 1 N N N N N N 24.239 3.951  24.226 7.134  0.780  2.209  H37 X1Z 80 
X1Z H38 H38 H 0 1 N N N N N N 24.884 3.423  22.635 7.391  2.155  1.110  H38 X1Z 81 
X1Z H39 H39 H 0 1 N N N N N N 25.744 1.206  27.058 3.231  0.003  0.905  H39 X1Z 82 
X1Z H40 H40 H 0 1 N N N N N N 28.603 -1.155 29.643 -0.347 -2.072 -0.570 H40 X1Z 83 
X1Z H41 H41 H 0 1 N N N N N N 26.473 -2.784 29.798 -4.011 -0.491 1.354  H41 X1Z 84 
X1Z H42 H42 H 0 1 N N N N N N 22.843 -1.909 29.012 -4.442 0.973  0.930  H42 X1Z 85 
X1Z H43 H43 H 0 1 N N N N N N 23.294 -3.385 28.591 -7.224 -1.206 -1.653 H43 X1Z 86 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X1Z F01 C02 SING N N 1  
X1Z F03 C02 SING N N 2  
X1Z C02 C43 SING N N 3  
X1Z C02 C04 SING N N 4  
X1Z C43 C42 SING N N 5  
X1Z C13 C12 SING N N 6  
X1Z C13 C14 SING N N 7  
X1Z C12 C11 SING N N 8  
X1Z C42 C06 SING N N 9  
X1Z C04 C05 SING N N 10 
X1Z C11 C10 SING N N 11 
X1Z C14 C15 SING N N 12 
X1Z C05 C06 SING N N 13 
X1Z C06 C07 SING N N 14 
X1Z O41 C07 DOUB N N 15 
X1Z C07 N08 SING N N 16 
X1Z C15 C10 SING N N 17 
X1Z C10 C09 SING N N 18 
X1Z N08 C09 SING N N 19 
X1Z C09 C16 SING N N 20 
X1Z C16 O40 DOUB N N 21 
X1Z C16 N17 SING N N 22 
X1Z O26 C25 SING N N 23 
X1Z N17 C18 SING N N 24 
X1Z N28 C29 SING N N 25 
X1Z N28 C27 SING N N 26 
X1Z C25 C24 SING N N 27 
X1Z C25 C27 SING N N 28 
X1Z C29 C30 SING N N 29 
X1Z C36 C24 SING N N 30 
X1Z C36 C37 SING N N 31 
X1Z N23 C24 SING N N 32 
X1Z N23 C22 SING N N 33 
X1Z C24 C38 SING N N 34 
X1Z C27 O35 DOUB N N 35 
X1Z C30 N31 DOUB Y N 36 
X1Z C30 S34 SING Y N 37 
X1Z N31 C32 SING Y N 38 
X1Z C18 C22 SING N N 39 
X1Z C18 C19 SING N N 40 
X1Z S34 C33 SING Y N 41 
X1Z C22 O39 DOUB N N 42 
X1Z C37 C38 SING N N 43 
X1Z O20 C19 SING N N 44 
X1Z O20 C21 SING N N 45 
X1Z C32 C33 DOUB Y N 46 
X1Z C10 H1  SING N N 47 
X1Z C13 H2  SING N N 48 
X1Z C13 H3  SING N N 49 
X1Z C15 H4  SING N N 50 
X1Z C15 H5  SING N N 51 
X1Z C21 H6  SING N N 52 
X1Z C21 H7  SING N N 53 
X1Z C21 H8  SING N N 54 
X1Z C04 H9  SING N N 55 
X1Z C04 H10 SING N N 56 
X1Z C05 H11 SING N N 57 
X1Z C05 H12 SING N N 58 
X1Z C06 H13 SING N N 59 
X1Z C09 H14 SING N N 60 
X1Z C11 H15 SING N N 61 
X1Z C11 H16 SING N N 62 
X1Z C12 H17 SING N N 63 
X1Z C12 H18 SING N N 64 
X1Z C14 H19 SING N N 65 
X1Z C14 H20 SING N N 66 
X1Z C18 H21 SING N N 67 
X1Z C19 H22 SING N N 68 
X1Z C19 H23 SING N N 69 
X1Z C25 H24 SING N N 70 
X1Z C29 H25 SING N N 71 
X1Z C29 H26 SING N N 72 
X1Z C32 H27 SING N N 73 
X1Z C33 H28 SING N N 74 
X1Z C36 H29 SING N N 75 
X1Z C36 H30 SING N N 76 
X1Z C37 H31 SING N N 77 
X1Z C37 H32 SING N N 78 
X1Z C38 H33 SING N N 79 
X1Z C38 H34 SING N N 80 
X1Z C42 H35 SING N N 81 
X1Z C42 H36 SING N N 82 
X1Z C43 H37 SING N N 83 
X1Z C43 H38 SING N N 84 
X1Z N08 H39 SING N N 85 
X1Z N17 H40 SING N N 86 
X1Z N23 H41 SING N N 87 
X1Z N28 H42 SING N N 88 
X1Z O26 H43 SING N N 89 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X1Z InChI            InChI                1.06  "InChI=1S/C29H43F2N5O6S/c1-42-17-20(25(39)36-28(10-5-11-28)23(37)27(41)33-16-21-32-14-15-43-21)34-26(40)22(18-6-3-2-4-7-18)35-24(38)19-8-12-29(30,31)13-9-19/h14-15,18-20,22-23,37H,2-13,16-17H2,1H3,(H,33,41)(H,34,40)(H,35,38)(H,36,39)/t20-,22-,23-/m1/s1" 
X1Z InChIKey         InChI                1.06  UHHQICGXTSMHIU-YMPZKCBVSA-N                                                                                                                                                                                                                                   
X1Z SMILES_CANONICAL CACTVS               3.385 "COC[C@@H](NC(=O)[C@H](NC(=O)C1CCC(F)(F)CC1)C2CCCCC2)C(=O)NC3(CCC3)[C@H](O)C(=O)NCc4sccn4"                                                                                                                                                                    
X1Z SMILES           CACTVS               3.385 "COC[CH](NC(=O)[CH](NC(=O)C1CCC(F)(F)CC1)C2CCCCC2)C(=O)NC3(CCC3)[CH](O)C(=O)NCc4sccn4"                                                                                                                                                                        
X1Z SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COC[C@H](C(=O)NC1(CCC1)[C@@H](C(=O)NCc2nccs2)O)NC(=O)[C@@H](C3CCCCC3)NC(=O)C4CCC(CC4)(F)F"                                                                                                                                                                   
X1Z SMILES           "OpenEye OEToolkits" 2.0.7 "COCC(C(=O)NC1(CCC1)C(C(=O)NCc2nccs2)O)NC(=O)C(C3CCCCC3)NC(=O)C4CCC(CC4)(F)F"                                                                                                                                                                                 
# 
_pdbx_chem_comp_identifier.comp_id           X1Z 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[(1~{R})-1-cyclohexyl-2-[[(2~{R})-3-methoxy-1-oxidanylidene-1-[[1-[(1~{S})-1-oxidanyl-2-oxidanylidene-2-(1,3-thiazol-2-ylmethylamino)ethyl]cyclobutyl]amino]propan-2-yl]amino]-2-oxidanylidene-ethyl]-4,4-bis(fluoranyl)cyclohexane-1-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X1Z "Create component" 2023-10-19 PDBJ 
X1Z "Initial release"  2024-08-28 RCSB 
X1Z "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            X1Z 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C25 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
_pdbx_chem_comp_pcm.first_instance_model_db_code       8WTI 
# 
