data_YFZ
# 
_chem_comp.id                                    YFZ 
_chem_comp.name                                  "(-)-Galantinic acid" 
_chem_comp.type                                  "peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C7 H15 N O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "(3S,5S,6S)-6-azanyl-3,5,7-tris(oxidanyl)heptanoic acid; Galantinic acid" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-12-04 
_chem_comp.pdbx_modified_date                    2024-07-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        193.198 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YFZ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8R6C 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YFZ C   C1  C 0 1 N N N N Y Y 254.937 186.338 238.176 3.657  0.158  -0.076 C   YFZ 1  
YFZ CA  C2  C 0 1 N N N N Y N 255.256 187.323 239.277 2.359  0.813  0.319  CA  YFZ 2  
YFZ CB  C3  C 0 1 N N S N Y N 254.041 187.569 240.154 1.201  -0.153 0.062  CB  YFZ 3  
YFZ O   O1  O 0 1 N N N N Y Y 254.096 186.626 237.331 3.655  -0.965 -0.523 O   YFZ 4  
YFZ CG  C4  C 0 1 N N N N Y N 254.340 188.434 241.364 -0.126 0.554  0.345  CG  YFZ 5  
YFZ CZ  C5  C 0 1 N N N N N N 252.356 189.230 244.572 -3.771 -0.637 -0.007 CZ  YFZ 6  
YFZ CD  C6  C 0 1 N N S N Y N 253.135 188.650 242.268 -1.287 -0.369 -0.030 CD  YFZ 7  
YFZ CE  C7  C 0 1 N N S N Y N 253.502 189.340 243.590 -2.610 0.287  0.368  CE  YFZ 8  
YFZ O3  O2  O 0 1 N N N N N N 252.170 189.435 241.568 -1.275 -0.600 -1.440 O3  YFZ 9  
YFZ O2  O3  O 0 1 N N N N N N 253.563 186.304 240.602 1.328  -1.288 0.921  O2  YFZ 10 
YFZ N   N1  N 0 1 N N N Y Y N 253.872 190.741 243.354 -2.754 1.567  -0.339 N   YFZ 11 
YFZ OH  O4  O 0 1 N N N N N N 252.809 189.381 245.908 -4.997 -0.078 0.468  OH  YFZ 12 
YFZ HA1 H2  H 0 1 N N N N Y N 256.071 186.920 239.896 2.389  1.071  1.378  HA1 YFZ 13 
YFZ HA2 H3  H 0 1 N N N N Y N 255.574 188.275 238.827 2.214  1.718  -0.271 HA2 YFZ 14 
YFZ HB  H4  H 0 1 N N N N Y N 253.268 188.067 239.550 1.224  -0.480 -0.977 HB  YFZ 15 
YFZ HG1 H5  H 0 1 N N N N Y N 255.133 187.949 241.951 -0.187 0.802  1.405  HG1 YFZ 16 
YFZ HG2 H6  H 0 1 N N N N Y N 254.692 189.415 241.012 -0.184 1.469  -0.245 HG2 YFZ 17 
YFZ HZ1 H7  H 0 1 N N N N N N 251.618 190.016 244.352 -3.816 -0.742 -1.091 HZ1 YFZ 18 
YFZ HZ2 H8  H 0 1 N N N N N N 251.883 188.243 244.463 -3.618 -1.616 0.447  HZ2 YFZ 19 
YFZ HD  H9  H 0 1 N N N N Y N 252.704 187.666 242.506 -1.180 -1.319 0.495  HD  YFZ 20 
YFZ HE  H10 H 0 1 N N N N Y N 254.369 188.813 244.016 -2.619 0.463  1.444  HE  YFZ 21 
YFZ HO3 H11 H 0 1 N N N N N N 251.413 189.576 242.124 -1.366 0.203  -1.971 HO3 YFZ 22 
YFZ HO2 H12 H 0 1 N N N N N N 252.801 186.431 241.154 1.315  -1.072 1.863  HO2 YFZ 23 
YFZ H   H13 H 0 1 N N N Y Y N 254.108 191.175 244.224 -2.036 2.217  -0.059 H   YFZ 24 
YFZ H2  H14 H 0 1 N Y N Y Y N 254.659 190.779 242.739 -2.749 1.430  -1.339 H2  YFZ 25 
YFZ H1  H16 H 0 1 N N N N N N 252.072 189.308 246.503 -5.778 -0.612 0.265  H1  YFZ 26 
YFZ OXT O5  O 0 1 N Y N N Y Y ?       ?       ?       4.814  0.823  0.063  OXT YFZ 27 
YFZ HXT H1  H 0 1 N Y N N Y Y ?       ?       ?       5.621  0.362  -0.204 HXT YFZ 28 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YFZ O   C   DOUB N N 1  
YFZ C   CA  SING N N 2  
YFZ CA  CB  SING N N 3  
YFZ CB  O2  SING N N 4  
YFZ CB  CG  SING N N 5  
YFZ CG  CD  SING N N 6  
YFZ O3  CD  SING N N 7  
YFZ CD  CE  SING N N 8  
YFZ N   CE  SING N N 9  
YFZ CE  CZ  SING N N 10 
YFZ CZ  OH  SING N N 11 
YFZ CA  HA1 SING N N 12 
YFZ CA  HA2 SING N N 13 
YFZ CB  HB  SING N N 14 
YFZ CG  HG1 SING N N 15 
YFZ CG  HG2 SING N N 16 
YFZ CZ  HZ1 SING N N 17 
YFZ CZ  HZ2 SING N N 18 
YFZ CD  HD  SING N N 19 
YFZ CE  HE  SING N N 20 
YFZ O3  HO3 SING N N 21 
YFZ O2  HO2 SING N N 22 
YFZ N   H   SING N N 23 
YFZ N   H2  SING N N 24 
YFZ OH  H1  SING N N 25 
YFZ C   OXT SING N N 26 
YFZ OXT HXT SING N N 27 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YFZ InChI            InChI                1.06  "InChI=1S/C7H15NO5/c8-5(3-9)6(11)1-4(10)2-7(12)13/h4-6,9-11H,1-3,8H2,(H,12,13)/t4-,5-,6-/m0/s1" 
YFZ InChIKey         InChI                1.06  ISCLAUVNBIFWBC-ZLUOBGJFSA-N                                                                     
YFZ SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CO)[C@@H](O)C[C@H](O)CC(O)=O"                                                          
YFZ SMILES           CACTVS               3.385 "N[CH](CO)[CH](O)C[CH](O)CC(O)=O"                                                               
YFZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H](CC(=O)O)O)[C@@H]([C@H](CO)N)O"                                                        
YFZ SMILES           "OpenEye OEToolkits" 2.0.7 "C(C(CC(=O)O)O)C(C(CO)N)O"                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           YFZ 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(3~{S},5~{S},6~{S})-6-azanyl-3,5,7-tris(oxidanyl)heptanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YFZ "Create component"         2023-12-04 PDBE 
YFZ "Modify backbone"          2024-01-15 PDBE 
YFZ "Modify leaving atom flag" 2024-01-15 PDBE 
YFZ "Modify linking type"      2024-01-15 PDBE 
YFZ "Modify name"              2024-01-15 PDBE 
YFZ "Initial release"          2024-07-24 RCSB 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 YFZ "(3S,5S,6S)-6-azanyl-3,5,7-tris(oxidanyl)heptanoic acid" PDB     ? 
2 YFZ "Galantinic acid"                                        PUBCHEM ? 
# 
