data_1D37 # _entry.id 1D37 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1D37 pdb_00001d37 10.2210/pdb1d37/pdb RCSB DDF028 ? ? WWPDB D_1000172641 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1992-04-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1D37 _pdbx_database_status.recvd_initial_deposition_date 1991-04-23 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gao, Y.-G.' 1 'Wang, A.H.-J.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Influence of aglycone modifications on the binding of anthracycline drugs to DNA: the molecular structure of idarubicin and 4-O-demethyl-11-deoxydoxorubicin complexed to d(CGATCG). ; 'Anti-Cancer Drug Des.' 6 137 149 1991 ACDDEA UK 0266-9536 0807 ? 1872945 ? 1 ;Facile Formation of Crosslinked Adduct between DNA and the Daunorubicin Derivative MAR70 Mediated by Formaldehyde: Molecular Structure of the MAR70-d(CGTnACG) Covalent Adduct ; Proc.Natl.Acad.Sci.USA 88 4845 4849 1991 PNASA6 US 0027-8424 0040 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gao, Y.G.' 1 ? primary 'Wang, A.H.' 2 ? 1 'Gao, Y.-G.' 3 ? 1 'Liaw, Y.-C.' 4 ? 1 'Li, Y.-K.' 5 ? 1 'Van Der Marel, G.A.' 6 ? 1 'Van Boom, J.H.' 7 ? 1 'Wang, A.H.-J.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*AP*TP*CP*G)-3') ; 1809.217 1 ? ? ? ? 2 non-polymer syn 1-O-DEMETHYL-6-DEOXYDOXORUBICIN 513.493 1 ? ? ? ? 3 water nat water 18.015 42 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DA)(DT)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGATCG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1-O-DEMETHYL-6-DEOXYDOXORUBICIN DM4 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DA n 1 4 DT n 1 5 DC n 1 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DM4 non-polymer . 1-O-DEMETHYL-6-DEOXYDOXORUBICIN ? 'C26 H27 N O10' 513.493 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DM4 1 7 7 DM4 DM4 A . C 3 HOH 1 8 8 HOH HOH A . C 3 HOH 2 9 9 HOH HOH A . C 3 HOH 3 10 10 HOH HOH A . C 3 HOH 4 11 11 HOH HOH A . C 3 HOH 5 12 12 HOH HOH A . C 3 HOH 6 13 13 HOH HOH A . C 3 HOH 7 14 14 HOH HOH A . C 3 HOH 8 15 15 HOH HOH A . C 3 HOH 9 16 16 HOH HOH A . C 3 HOH 10 17 17 HOH HOH A . C 3 HOH 11 18 18 HOH HOH A . C 3 HOH 12 19 19 HOH HOH A . C 3 HOH 13 20 20 HOH HOH A . C 3 HOH 14 21 21 HOH HOH A . C 3 HOH 15 22 22 HOH HOH A . C 3 HOH 16 23 23 HOH HOH A . C 3 HOH 17 24 24 HOH HOH A . C 3 HOH 18 25 25 HOH HOH A . C 3 HOH 19 26 26 HOH HOH A . C 3 HOH 20 27 27 HOH HOH A . C 3 HOH 21 28 28 HOH HOH A . C 3 HOH 22 29 29 HOH HOH A . C 3 HOH 23 30 30 HOH HOH A . C 3 HOH 24 31 31 HOH HOH A . C 3 HOH 25 32 32 HOH HOH A . C 3 HOH 26 33 33 HOH HOH A . C 3 HOH 27 34 34 HOH HOH A . C 3 HOH 28 35 35 HOH HOH A . C 3 HOH 29 36 36 HOH HOH A . C 3 HOH 30 37 37 HOH HOH A . C 3 HOH 31 38 38 HOH HOH A . C 3 HOH 32 39 39 HOH HOH A . C 3 HOH 33 40 40 HOH HOH A . C 3 HOH 34 41 41 HOH HOH A . C 3 HOH 35 42 42 HOH HOH A . C 3 HOH 36 43 43 HOH HOH A . C 3 HOH 37 44 44 HOH HOH A . C 3 HOH 38 45 45 HOH HOH A . C 3 HOH 39 46 46 HOH HOH A . C 3 HOH 40 47 47 HOH HOH A . C 3 HOH 41 48 48 HOH HOH A . C 3 HOH 42 49 49 HOH HOH A . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1D37 _cell.length_a 28.180 _cell.length_b 28.180 _cell.length_c 53.140 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1D37 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # _exptl.entry_id 1D37 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.92 _exptl_crystal.density_percent_sol 57.81 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 298.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.00 _exptl_crystal_grow.pdbx_details 'pH 6.00, VAPOR DIFFUSION, temperature 298.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 BACL2 ? ? ? 1 4 1 'NA CACODYLATE' ? ? ? 1 5 1 SPERMINE ? ? ? 1 6 2 WATER ? ? ? 1 7 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 298.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'RIGAKU AFC-5R' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1D37 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 2.000 _reflns.d_resolution_low ? _reflns.d_resolution_high 1.800 _reflns.number_obs 1247 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1D37 _refine.ls_number_reflns_obs 1247 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 1.800 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1790000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 120 _refine_hist.pdbx_number_atoms_ligand 37 _refine_hist.number_atoms_solvent 42 _refine_hist.number_atoms_total 199 _refine_hist.d_res_high 1.800 _refine_hist.d_res_low . # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function n_bond_d 0.025 ? ? ? 'X-RAY DIFFRACTION' ? n_angle_d 0.179 ? ? ? 'X-RAY DIFFRACTION' ? n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1D37 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1D37 _struct.title ;INFLUENCE OF AGLYCONE MODIFICATIONS ON THE BINDING OF ANTHRACYCLINE DRUGS TO DNA: THE MOLECULAR STRUCTURE OF IDARUBICIN AND 4-O-DEMETHYL-11-DEOXYDOXORUBICIN COMPLEXED TO D(CGATCG) ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1D37 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1D37 _struct_ref.pdbx_db_accession 1D37 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1D37 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1D37 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 6 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 28.1800000000 -1.0000000000 0.0000000000 0.0000000000 28.1800000000 0.0000000000 0.0000000000 -1.0000000000 26.5700000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 A DT 4 N3 ? ? A DA 3 A DT 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 3 A DT 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 3 N1 ? ? A DT 4 A DA 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 3 N6 ? ? A DT 4 A DA 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A DM4 7 ? 9 'BINDING SITE FOR RESIDUE DM4 A 7' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 DC A 1 ? DC A 1 . ? 8_665 ? 2 AC1 9 DG A 2 ? DG A 2 . ? 8_665 ? 3 AC1 9 DA A 3 ? DA A 3 . ? 8_665 ? 4 AC1 9 DT A 4 ? DT A 4 . ? 1_555 ? 5 AC1 9 DC A 5 ? DC A 5 . ? 1_555 ? 6 AC1 9 DG A 6 ? DG A 6 . ? 1_555 ? 7 AC1 9 HOH C . ? HOH A 16 . ? 1_555 ? 8 AC1 9 HOH C . ? HOH A 27 . ? 1_555 ? 9 AC1 9 HOH C . ? HOH A 48 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A DG 2 ? ? "O5'" A DG 2 ? ? 1.656 1.593 0.063 0.010 N 2 1 "C5'" A DA 3 ? ? "C4'" A DA 3 ? ? 1.555 1.512 0.043 0.007 N 3 1 C2 A DT 4 ? ? N3 A DT 4 ? ? 1.319 1.373 -0.054 0.008 N 4 1 C4 A DG 6 ? ? C5 A DG 6 ? ? 1.313 1.379 -0.066 0.007 N 5 1 C6 A DG 6 ? ? N1 A DG 6 ? ? 1.309 1.391 -0.082 0.007 N 6 1 N7 A DG 6 ? ? C8 A DG 6 ? ? 1.368 1.305 0.063 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A DC 1 ? ? "O3'" A DC 1 ? ? P A DG 2 ? ? 138.61 119.70 18.91 1.20 Y 2 1 "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 101.91 109.40 -7.49 0.80 N 3 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 94.30 102.40 -8.10 0.80 N 4 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 114.21 108.30 5.91 0.30 N 5 1 N1 A DG 2 ? ? C2 A DG 2 ? ? N3 A DG 2 ? ? 127.73 123.90 3.83 0.60 N 6 1 N1 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 109.79 116.20 -6.41 0.90 N 7 1 N1 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 115.65 119.90 -4.25 0.60 N 8 1 "O3'" A DG 2 ? ? P A DA 3 ? ? OP1 A DA 3 ? ? 117.46 110.50 6.96 1.10 Y 9 1 OP1 A DA 3 ? ? P A DA 3 ? ? OP2 A DA 3 ? ? 110.23 119.60 -9.37 1.50 N 10 1 "O5'" A DA 3 ? ? P A DA 3 ? ? OP2 A DA 3 ? ? 118.39 110.70 7.69 1.20 N 11 1 "O5'" A DA 3 ? ? "C5'" A DA 3 ? ? "C4'" A DA 3 ? ? 100.67 109.40 -8.73 0.80 N 12 1 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 111.86 108.30 3.56 0.30 N 13 1 C6 A DA 3 ? ? N1 A DA 3 ? ? C2 A DA 3 ? ? 125.50 118.60 6.90 0.60 N 14 1 N1 A DA 3 ? ? C2 A DA 3 ? ? N3 A DA 3 ? ? 126.11 129.30 -3.19 0.50 N 15 1 C5 A DA 3 ? ? C6 A DA 3 ? ? N1 A DA 3 ? ? 113.37 117.70 -4.33 0.50 N 16 1 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 123.18 118.60 4.58 0.60 N 17 1 "C3'" A DA 3 ? ? "O3'" A DA 3 ? ? P A DT 4 ? ? 127.35 119.70 7.65 1.20 Y 18 1 "O5'" A DT 4 ? ? "C5'" A DT 4 ? ? "C4'" A DT 4 ? ? 103.57 109.40 -5.83 0.80 N 19 1 N1 A DT 4 ? ? C2 A DT 4 ? ? N3 A DT 4 ? ? 119.20 114.60 4.60 0.60 N 20 1 C2 A DT 4 ? ? N3 A DT 4 ? ? C4 A DT 4 ? ? 121.95 127.20 -5.25 0.60 N 21 1 N3 A DT 4 ? ? C4 A DT 4 ? ? C5 A DT 4 ? ? 119.62 115.20 4.42 0.60 N 22 1 N1 A DT 4 ? ? C2 A DT 4 ? ? O2 A DT 4 ? ? 116.89 123.10 -6.21 0.80 N 23 1 "O5'" A DC 5 ? ? "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? 103.44 109.40 -5.96 0.80 N 24 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 118.26 108.30 9.96 0.30 N 25 1 C2 A DC 5 ? ? N3 A DC 5 ? ? C4 A DC 5 ? ? 123.94 119.90 4.04 0.50 N 26 1 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 127.66 121.90 5.76 0.70 N 27 1 N3 A DC 5 ? ? C4 A DC 5 ? ? N4 A DC 5 ? ? 125.00 118.00 7.00 0.70 N 28 1 C5 A DC 5 ? ? C4 A DC 5 ? ? N4 A DC 5 ? ? 114.33 120.20 -5.87 0.70 N 29 1 "O5'" A DG 6 ? ? P A DG 6 ? ? OP1 A DG 6 ? ? 99.16 105.70 -6.54 0.90 N 30 1 "O5'" A DG 6 ? ? P A DG 6 ? ? OP2 A DG 6 ? ? 122.61 110.70 11.91 1.20 N 31 1 C4 A DG 6 ? ? C5 A DG 6 ? ? N7 A DG 6 ? ? 114.13 110.80 3.33 0.40 N 32 1 C5 A DG 6 ? ? N7 A DG 6 ? ? C8 A DG 6 ? ? 99.64 104.30 -4.66 0.50 N 33 1 N1 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 122.15 116.20 5.95 0.90 N 34 1 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 113.78 119.90 -6.12 0.70 N 35 1 N1 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 126.38 119.90 6.48 0.60 N 36 1 C5 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 119.80 128.60 -8.80 0.60 N # _struct_site_keywords.site_id 1 _struct_site_keywords.text INTERCALATION # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DM4 C1 C Y N 108 DM4 C2 C Y N 109 DM4 C3 C Y N 110 DM4 C4 C Y N 111 DM4 O4 O N N 112 DM4 C5 C Y N 113 DM4 C6 C N N 114 DM4 O6 O N N 115 DM4 C7 C Y N 116 DM4 C8 C Y N 117 DM4 O8 O N N 118 DM4 C9 C Y N 119 DM4 C10 C N S 120 DM4 O10 O N N 121 DM4 C11 C N N 122 DM4 C12 C N S 123 DM4 O12 O N N 124 DM4 C13 C N N 125 DM4 O13 O N N 126 DM4 C14 C N N 127 DM4 O14 O N N 128 DM4 C15 C N N 129 DM4 C16 C Y N 130 DM4 C17 C Y N 131 DM4 C18 C Y N 132 DM4 C19 C N N 133 DM4 O19 O N N 134 DM4 C20 C Y N 135 DM4 "C1'" C N R 136 DM4 "C2'" C N N 137 DM4 "C3'" C N S 138 DM4 "N3'" N N N 139 DM4 "C4'" C N S 140 DM4 "O4'" O N N 141 DM4 "C5'" C N S 142 DM4 "O5'" O N N 143 DM4 "C6'" C N N 144 DM4 H1 H N N 145 DM4 H2 H N N 146 DM4 H3 H N N 147 DM4 HO4 H N N 148 DM4 HO8 H N N 149 DM4 H10 H N N 150 DM4 H111 H N N 151 DM4 H112 H N N 152 DM4 HO12 H N N 153 DM4 H141 H N N 154 DM4 H142 H N N 155 DM4 HO14 H N N 156 DM4 H151 H N N 157 DM4 H152 H N N 158 DM4 H17 H N N 159 DM4 "H1'" H N N 160 DM4 "H2'1" H N N 161 DM4 "H2'2" H N N 162 DM4 "H3'" H N N 163 DM4 "HN'1" H N N 164 DM4 "HN'2" H N N 165 DM4 "H4'" H N N 166 DM4 "HO4'" H N N 167 DM4 "H5'" H N N 168 DM4 "H6'1" H N N 169 DM4 "H6'2" H N N 170 DM4 "H6'3" H N N 171 DT OP3 O N N 172 DT P P N N 173 DT OP1 O N N 174 DT OP2 O N N 175 DT "O5'" O N N 176 DT "C5'" C N N 177 DT "C4'" C N R 178 DT "O4'" O N N 179 DT "C3'" C N S 180 DT "O3'" O N N 181 DT "C2'" C N N 182 DT "C1'" C N R 183 DT N1 N N N 184 DT C2 C N N 185 DT O2 O N N 186 DT N3 N N N 187 DT C4 C N N 188 DT O4 O N N 189 DT C5 C N N 190 DT C7 C N N 191 DT C6 C N N 192 DT HOP3 H N N 193 DT HOP2 H N N 194 DT "H5'" H N N 195 DT "H5''" H N N 196 DT "H4'" H N N 197 DT "H3'" H N N 198 DT "HO3'" H N N 199 DT "H2'" H N N 200 DT "H2''" H N N 201 DT "H1'" H N N 202 DT H3 H N N 203 DT H71 H N N 204 DT H72 H N N 205 DT H73 H N N 206 DT H6 H N N 207 HOH O O N N 208 HOH H1 H N N 209 HOH H2 H N N 210 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DM4 C1 C2 doub Y N 113 DM4 C1 C20 sing Y N 114 DM4 C1 H1 sing N N 115 DM4 C2 C3 sing Y N 116 DM4 C2 H2 sing N N 117 DM4 C3 C4 doub Y N 118 DM4 C3 H3 sing N N 119 DM4 C4 O4 sing N N 120 DM4 C4 C5 sing Y N 121 DM4 O4 HO4 sing N N 122 DM4 C5 C6 sing N N 123 DM4 C5 C20 doub Y N 124 DM4 C6 O6 doub N N 125 DM4 C6 C7 sing N N 126 DM4 C7 C8 doub Y N 127 DM4 C7 C18 sing Y N 128 DM4 C8 O8 sing N N 129 DM4 C8 C9 sing Y N 130 DM4 O8 HO8 sing N N 131 DM4 C9 C10 sing N N 132 DM4 C9 C16 doub Y N 133 DM4 C10 O10 sing N N 134 DM4 C10 C11 sing N N 135 DM4 C10 H10 sing N N 136 DM4 O10 "C1'" sing N N 137 DM4 C11 C12 sing N N 138 DM4 C11 H111 sing N N 139 DM4 C11 H112 sing N N 140 DM4 C12 O12 sing N N 141 DM4 C12 C13 sing N N 142 DM4 C12 C15 sing N N 143 DM4 O12 HO12 sing N N 144 DM4 C13 O13 doub N N 145 DM4 C13 C14 sing N N 146 DM4 C14 O14 sing N N 147 DM4 C14 H141 sing N N 148 DM4 C14 H142 sing N N 149 DM4 O14 HO14 sing N N 150 DM4 C15 C16 sing N N 151 DM4 C15 H151 sing N N 152 DM4 C15 H152 sing N N 153 DM4 C16 C17 sing Y N 154 DM4 C17 C18 doub Y N 155 DM4 C17 H17 sing N N 156 DM4 C18 C19 sing N N 157 DM4 C19 O19 doub N N 158 DM4 C19 C20 sing N N 159 DM4 "C1'" "C2'" sing N N 160 DM4 "C1'" "O5'" sing N N 161 DM4 "C1'" "H1'" sing N N 162 DM4 "C2'" "C3'" sing N N 163 DM4 "C2'" "H2'1" sing N N 164 DM4 "C2'" "H2'2" sing N N 165 DM4 "C3'" "N3'" sing N N 166 DM4 "C3'" "C4'" sing N N 167 DM4 "C3'" "H3'" sing N N 168 DM4 "N3'" "HN'1" sing N N 169 DM4 "N3'" "HN'2" sing N N 170 DM4 "C4'" "O4'" sing N N 171 DM4 "C4'" "C5'" sing N N 172 DM4 "C4'" "H4'" sing N N 173 DM4 "O4'" "HO4'" sing N N 174 DM4 "C5'" "O5'" sing N N 175 DM4 "C5'" "C6'" sing N N 176 DM4 "C5'" "H5'" sing N N 177 DM4 "C6'" "H6'1" sing N N 178 DM4 "C6'" "H6'2" sing N N 179 DM4 "C6'" "H6'3" sing N N 180 DT OP3 P sing N N 181 DT OP3 HOP3 sing N N 182 DT P OP1 doub N N 183 DT P OP2 sing N N 184 DT P "O5'" sing N N 185 DT OP2 HOP2 sing N N 186 DT "O5'" "C5'" sing N N 187 DT "C5'" "C4'" sing N N 188 DT "C5'" "H5'" sing N N 189 DT "C5'" "H5''" sing N N 190 DT "C4'" "O4'" sing N N 191 DT "C4'" "C3'" sing N N 192 DT "C4'" "H4'" sing N N 193 DT "O4'" "C1'" sing N N 194 DT "C3'" "O3'" sing N N 195 DT "C3'" "C2'" sing N N 196 DT "C3'" "H3'" sing N N 197 DT "O3'" "HO3'" sing N N 198 DT "C2'" "C1'" sing N N 199 DT "C2'" "H2'" sing N N 200 DT "C2'" "H2''" sing N N 201 DT "C1'" N1 sing N N 202 DT "C1'" "H1'" sing N N 203 DT N1 C2 sing N N 204 DT N1 C6 sing N N 205 DT C2 O2 doub N N 206 DT C2 N3 sing N N 207 DT N3 C4 sing N N 208 DT N3 H3 sing N N 209 DT C4 O4 doub N N 210 DT C4 C5 sing N N 211 DT C5 C7 sing N N 212 DT C5 C6 doub N N 213 DT C7 H71 sing N N 214 DT C7 H72 sing N N 215 DT C7 H73 sing N N 216 DT C6 H6 sing N N 217 HOH O H1 sing N N 218 HOH O H2 sing N N 219 # _ndb_struct_conf_na.entry_id 1D37 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 6 8_665 0.239 -0.302 -0.116 5.120 3.022 -1.632 1 A_DC1:DG6_A A 1 ? A 6 ? 19 1 1 A DG 2 1_555 A DC 5 8_665 -0.258 -0.287 -0.381 -15.724 -0.507 -1.809 2 A_DG2:DC5_A A 2 ? A 5 ? 19 1 1 A DA 3 1_555 A DT 4 8_665 0.014 -0.205 -0.082 -8.948 -5.250 -0.891 3 A_DA3:DT4_A A 3 ? A 4 ? 20 1 1 A DT 4 1_555 A DA 3 8_665 -0.014 -0.205 -0.082 8.948 -5.250 -0.891 4 A_DT4:DA3_A A 4 ? A 3 ? 20 1 1 A DC 5 1_555 A DG 2 8_665 0.258 -0.287 -0.381 15.724 -0.507 -1.809 5 A_DC5:DG2_A A 5 ? A 2 ? 19 1 1 A DG 6 1_555 A DC 1 8_665 -0.239 -0.302 -0.116 -5.120 3.022 -1.632 6 A_DG6:DC1_A A 6 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 6 8_665 A DG 2 1_555 A DC 5 8_665 0.898 1.254 6.970 2.300 -0.739 34.452 2.357 -0.753 6.986 -1.246 -3.878 34.535 1 AA_DC1DG2:DC5DG6_AA A 1 ? A 6 ? A 2 ? A 5 ? 1 A DG 2 1_555 A DC 5 8_665 A DA 3 1_555 A DT 4 8_665 -1.216 0.523 3.239 -5.400 2.261 31.176 0.530 1.205 3.425 4.161 9.937 31.708 2 AA_DG2DA3:DT4DC5_AA A 2 ? A 5 ? A 3 ? A 4 ? 1 A DA 3 1_555 A DT 4 8_665 A DT 4 1_555 A DA 3 8_665 0.000 -0.402 3.033 0.000 -0.183 31.752 -0.704 0.000 3.035 -0.334 0.000 31.752 3 AA_DA3DT4:DA3DT4_AA A 3 ? A 4 ? A 4 ? A 3 ? 1 A DT 4 1_555 A DA 3 8_665 A DC 5 1_555 A DG 2 8_665 1.216 0.523 3.239 5.400 2.261 31.176 0.530 -1.205 3.425 4.161 -9.937 31.708 4 AA_DT4DC5:DG2DA3_AA A 4 ? A 3 ? A 5 ? A 2 ? 1 A DC 5 1_555 A DG 2 8_665 A DG 6 1_555 A DC 1 8_665 -0.898 1.254 6.970 -2.300 -0.739 34.452 2.357 0.753 6.986 -1.246 3.878 34.535 5 AA_DC5DG6:DC1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ? # _atom_sites.entry_id 1D37 _atom_sites.fract_transf_matrix[1][1] 0.035486 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.035486 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018818 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DC A 1 1 ? 9.091 19.991 23.440 1.00 20.90 ? 1 DC A "O5'" 1 ATOM 2 C "C5'" . DC A 1 1 ? 9.801 21.191 23.865 1.00 20.59 ? 1 DC A "C5'" 1 ATOM 3 C "C4'" . DC A 1 1 ? 11.221 20.879 24.248 1.00 20.52 ? 1 DC A "C4'" 1 ATOM 4 O "O4'" . DC A 1 1 ? 11.345 19.715 25.077 1.00 20.18 ? 1 DC A "O4'" 1 ATOM 5 C "C3'" . DC A 1 1 ? 12.126 20.628 22.983 1.00 20.44 ? 1 DC A "C3'" 1 ATOM 6 O "O3'" . DC A 1 1 ? 13.233 21.482 23.020 1.00 21.80 ? 1 DC A "O3'" 1 ATOM 7 C "C2'" . DC A 1 1 ? 12.441 19.154 23.036 1.00 19.64 ? 1 DC A "C2'" 1 ATOM 8 C "C1'" . DC A 1 1 ? 12.332 18.819 24.567 1.00 18.31 ? 1 DC A "C1'" 1 ATOM 9 N N1 . DC A 1 1 ? 11.872 17.443 24.710 1.00 16.84 ? 1 DC A N1 1 ATOM 10 C C2 . DC A 1 1 ? 12.861 16.460 24.816 1.00 15.70 ? 1 DC A C2 1 ATOM 11 O O2 . DC A 1 1 ? 14.053 16.857 24.774 1.00 15.90 ? 1 DC A O2 1 ATOM 12 N N3 . DC A 1 1 ? 12.461 15.200 24.891 1.00 14.79 ? 1 DC A N3 1 ATOM 13 C C4 . DC A 1 1 ? 11.171 14.845 24.864 1.00 14.64 ? 1 DC A C4 1 ATOM 14 N N4 . DC A 1 1 ? 10.799 13.543 24.949 1.00 14.38 ? 1 DC A N4 1 ATOM 15 C C5 . DC A 1 1 ? 10.139 15.803 24.731 1.00 15.14 ? 1 DC A C5 1 ATOM 16 C C6 . DC A 1 1 ? 10.551 17.108 24.684 1.00 15.87 ? 1 DC A C6 1 ATOM 17 P P . DG A 1 2 ? 13.800 22.727 22.223 1.00 27.78 ? 2 DG A P 1 ATOM 18 O OP1 . DG A 1 2 ? 14.744 23.570 23.047 1.00 26.55 ? 2 DG A OP1 1 ATOM 19 O OP2 . DG A 1 2 ? 12.619 23.485 21.740 1.00 26.18 ? 2 DG A OP2 1 ATOM 20 O "O5'" . DG A 1 2 ? 14.569 21.794 21.091 1.00 23.21 ? 2 DG A "O5'" 1 ATOM 21 C "C5'" . DG A 1 2 ? 15.863 21.253 21.500 1.00 21.43 ? 2 DG A "C5'" 1 ATOM 22 C "C4'" . DG A 1 2 ? 16.271 20.473 20.284 1.00 21.44 ? 2 DG A "C4'" 1 ATOM 23 O "O4'" . DG A 1 2 ? 15.493 19.315 20.172 1.00 20.64 ? 2 DG A "O4'" 1 ATOM 24 C "C3'" . DG A 1 2 ? 16.026 21.211 18.939 1.00 21.09 ? 2 DG A "C3'" 1 ATOM 25 O "O3'" . DG A 1 2 ? 17.055 20.774 18.068 1.00 22.99 ? 2 DG A "O3'" 1 ATOM 26 C "C2'" . DG A 1 2 ? 14.651 20.721 18.530 1.00 20.44 ? 2 DG A "C2'" 1 ATOM 27 C "C1'" . DG A 1 2 ? 14.969 19.241 18.806 1.00 19.54 ? 2 DG A "C1'" 1 ATOM 28 N N9 . DG A 1 2 ? 13.839 18.376 18.657 1.00 17.86 ? 2 DG A N9 1 ATOM 29 C C8 . DG A 1 2 ? 12.506 18.734 18.594 1.00 17.74 ? 2 DG A C8 1 ATOM 30 N N7 . DG A 1 2 ? 11.698 17.703 18.450 1.00 17.45 ? 2 DG A N7 1 ATOM 31 C C5 . DG A 1 2 ? 12.580 16.587 18.392 1.00 16.89 ? 2 DG A C5 1 ATOM 32 C C6 . DG A 1 2 ? 12.337 15.220 18.259 1.00 16.51 ? 2 DG A C6 1 ATOM 33 O O6 . DG A 1 2 ? 11.272 14.600 18.142 1.00 16.86 ? 2 DG A O6 1 ATOM 34 N N1 . DG A 1 2 ? 13.467 14.451 18.312 1.00 15.85 ? 2 DG A N1 1 ATOM 35 C C2 . DG A 1 2 ? 14.704 14.992 18.392 1.00 15.37 ? 2 DG A C2 1 ATOM 36 N N2 . DG A 1 2 ? 15.631 14.014 18.386 1.00 14.69 ? 2 DG A N2 1 ATOM 37 N N3 . DG A 1 2 ? 15.017 16.249 18.525 1.00 15.92 ? 2 DG A N3 1 ATOM 38 C C4 . DG A 1 2 ? 13.901 17.001 18.535 1.00 17.04 ? 2 DG A C4 1 ATOM 39 P P . DA A 1 3 ? 18.086 21.749 17.334 1.00 27.93 ? 3 DA A P 1 ATOM 40 O OP1 . DA A 1 3 ? 18.686 22.837 18.137 1.00 27.89 ? 3 DA A OP1 1 ATOM 41 O OP2 . DA A 1 3 ? 17.021 22.316 16.383 1.00 30.02 ? 3 DA A OP2 1 ATOM 42 O "O5'" . DA A 1 3 ? 19.227 20.890 16.734 1.00 22.54 ? 3 DA A "O5'" 1 ATOM 43 C "C5'" . DA A 1 3 ? 20.050 20.160 17.733 1.00 21.25 ? 3 DA A "C5'" 1 ATOM 44 C "C4'" . DA A 1 3 ? 20.259 18.805 16.999 1.00 20.57 ? 3 DA A "C4'" 1 ATOM 45 O "O4'" . DA A 1 3 ? 19.114 17.959 17.111 1.00 19.41 ? 3 DA A "O4'" 1 ATOM 46 C "C3'" . DA A 1 3 ? 20.588 18.962 15.512 1.00 20.18 ? 3 DA A "C3'" 1 ATOM 47 O "O3'" . DA A 1 3 ? 21.786 18.221 15.156 1.00 21.34 ? 3 DA A "O3'" 1 ATOM 48 C "C2'" . DA A 1 3 ? 19.399 18.404 14.762 1.00 19.93 ? 3 DA A "C2'" 1 ATOM 49 C "C1'" . DA A 1 3 ? 18.802 17.446 15.799 1.00 18.55 ? 3 DA A "C1'" 1 ATOM 50 N N9 . DA A 1 3 ? 17.342 17.342 15.581 1.00 17.05 ? 3 DA A N9 1 ATOM 51 C C8 . DA A 1 3 ? 16.398 18.309 15.554 1.00 16.25 ? 3 DA A C8 1 ATOM 52 N N7 . DA A 1 3 ? 15.200 17.866 15.357 1.00 15.74 ? 3 DA A N7 1 ATOM 53 C C5 . DA A 1 3 ? 15.358 16.494 15.235 1.00 15.79 ? 3 DA A C5 1 ATOM 54 C C6 . DA A 1 3 ? 14.425 15.451 15.017 1.00 15.20 ? 3 DA A C6 1 ATOM 55 N N6 . DA A 1 3 ? 13.154 15.643 14.943 1.00 15.71 ? 3 DA A N6 1 ATOM 56 N N1 . DA A 1 3 ? 14.978 14.253 14.980 1.00 15.01 ? 3 DA A N1 1 ATOM 57 C C2 . DA A 1 3 ? 16.271 13.997 15.124 1.00 14.94 ? 3 DA A C2 1 ATOM 58 N N3 . DA A 1 3 ? 17.249 14.913 15.315 1.00 15.92 ? 3 DA A N3 1 ATOM 59 C C4 . DA A 1 3 ? 16.677 16.136 15.384 1.00 16.00 ? 3 DA A C4 1 ATOM 60 P P . DT A 1 4 ? 22.578 18.255 13.747 1.00 26.02 ? 4 DT A P 1 ATOM 61 O OP1 . DT A 1 4 ? 24.012 18.061 14.247 1.00 26.09 ? 4 DT A OP1 1 ATOM 62 O OP2 . DT A 1 4 ? 22.158 19.393 12.993 1.00 25.50 ? 4 DT A OP2 1 ATOM 63 O "O5'" . DT A 1 4 ? 21.994 16.866 13.184 1.00 22.01 ? 4 DT A "O5'" 1 ATOM 64 C "C5'" . DT A 1 4 ? 22.372 15.643 13.891 1.00 21.12 ? 4 DT A "C5'" 1 ATOM 65 C "C4'" . DT A 1 4 ? 21.732 14.563 13.088 1.00 20.80 ? 4 DT A "C4'" 1 ATOM 66 O "O4'" . DT A 1 4 ? 20.315 14.600 13.136 1.00 20.44 ? 4 DT A "O4'" 1 ATOM 67 C "C3'" . DT A 1 4 ? 22.096 14.603 11.590 1.00 21.04 ? 4 DT A "C3'" 1 ATOM 68 O "O3'" . DT A 1 4 ? 22.654 13.312 11.250 1.00 22.07 ? 4 DT A "O3'" 1 ATOM 69 C "C2'" . DT A 1 4 ? 20.802 14.966 10.899 1.00 20.34 ? 4 DT A "C2'" 1 ATOM 70 C "C1'" . DT A 1 4 ? 19.771 14.372 11.829 1.00 19.12 ? 4 DT A "C1'" 1 ATOM 71 N N1 . DT A 1 4 ? 18.486 15.065 11.776 1.00 18.22 ? 4 DT A N1 1 ATOM 72 C C2 . DT A 1 4 ? 17.359 14.279 11.818 1.00 17.08 ? 4 DT A C2 1 ATOM 73 O O2 . DT A 1 4 ? 17.528 13.067 11.792 1.00 17.94 ? 4 DT A O2 1 ATOM 74 N N3 . DT A 1 4 ? 16.173 14.851 11.749 1.00 16.41 ? 4 DT A N3 1 ATOM 75 C C4 . DT A 1 4 ? 16.026 16.189 11.755 1.00 16.29 ? 4 DT A C4 1 ATOM 76 O O4 . DT A 1 4 ? 14.871 16.657 11.685 1.00 16.60 ? 4 DT A O4 1 ATOM 77 C C5 . DT A 1 4 ? 17.190 17.032 11.712 1.00 16.71 ? 4 DT A C5 1 ATOM 78 C C7 . DT A 1 4 ? 17.094 18.514 11.685 1.00 16.86 ? 4 DT A C7 1 ATOM 79 C C6 . DT A 1 4 ? 18.390 16.435 11.739 1.00 17.33 ? 4 DT A C6 1 ATOM 80 P P . DC A 1 5 ? 23.663 13.129 9.932 1.00 28.44 ? 5 DC A P 1 ATOM 81 O OP1 . DC A 1 5 ? 24.517 12.019 10.362 1.00 26.76 ? 5 DC A OP1 1 ATOM 82 O OP2 . DC A 1 5 ? 24.173 14.513 9.544 1.00 26.01 ? 5 DC A OP2 1 ATOM 83 O "O5'" . DC A 1 5 ? 22.544 12.726 8.827 1.00 21.88 ? 5 DC A "O5'" 1 ATOM 84 C "C5'" . DC A 1 5 ? 21.997 11.396 8.885 1.00 20.99 ? 5 DC A "C5'" 1 ATOM 85 C "C4'" . DC A 1 5 ? 20.828 11.458 7.944 1.00 20.58 ? 5 DC A "C4'" 1 ATOM 86 O "O4'" . DC A 1 5 ? 19.808 12.289 8.518 1.00 20.46 ? 5 DC A "O4'" 1 ATOM 87 C "C3'" . DC A 1 5 ? 21.118 12.053 6.584 1.00 20.49 ? 5 DC A "C3'" 1 ATOM 88 O "O3'" . DC A 1 5 ? 20.498 11.233 5.532 1.00 22.05 ? 5 DC A "O3'" 1 ATOM 89 C "C2'" . DC A 1 5 ? 20.512 13.447 6.642 1.00 19.72 ? 5 DC A "C2'" 1 ATOM 90 C "C1'" . DC A 1 5 ? 19.300 13.112 7.514 1.00 18.92 ? 5 DC A "C1'" 1 ATOM 91 N N1 . DC A 1 5 ? 18.545 14.293 7.907 1.00 17.57 ? 5 DC A N1 1 ATOM 92 C C2 . DC A 1 5 ? 17.212 14.093 8.130 1.00 16.79 ? 5 DC A C2 1 ATOM 93 O O2 . DC A 1 5 ? 16.832 12.895 8.194 1.00 16.69 ? 5 DC A O2 1 ATOM 94 N N3 . DC A 1 5 ? 16.471 15.195 8.290 1.00 16.39 ? 5 DC A N3 1 ATOM 95 C C4 . DC A 1 5 ? 16.984 16.451 8.354 1.00 16.23 ? 5 DC A C4 1 ATOM 96 N N4 . DC A 1 5 ? 16.268 17.559 8.465 1.00 15.90 ? 5 DC A N4 1 ATOM 97 C C5 . DC A 1 5 ? 18.356 16.668 8.072 1.00 16.63 ? 5 DC A C5 1 ATOM 98 C C6 . DC A 1 5 ? 19.078 15.561 7.828 1.00 17.28 ? 5 DC A C6 1 ATOM 99 P P . DG A 1 6 ? 21.327 10.128 4.639 1.00 24.67 ? 6 DG A P 1 ATOM 100 O OP1 . DG A 1 6 ? 21.879 9.051 5.564 1.00 26.02 ? 6 DG A OP1 1 ATOM 101 O OP2 . DG A 1 6 ? 22.271 11.063 3.911 1.00 23.76 ? 6 DG A OP2 1 ATOM 102 O "O5'" . DG A 1 6 ? 20.233 9.282 3.895 1.00 19.48 ? 6 DG A "O5'" 1 ATOM 103 C "C5'" . DG A 1 6 ? 18.914 9.192 4.469 1.00 18.56 ? 6 DG A "C5'" 1 ATOM 104 C "C4'" . DG A 1 6 ? 18.125 8.248 3.560 1.00 17.41 ? 6 DG A "C4'" 1 ATOM 105 O "O4'" . DG A 1 6 ? 17.145 9.051 2.971 1.00 16.78 ? 6 DG A "O4'" 1 ATOM 106 C "C3'" . DG A 1 6 ? 18.917 7.642 2.386 1.00 17.33 ? 6 DG A "C3'" 1 ATOM 107 O "O3'" . DG A 1 6 ? 18.275 6.411 1.966 1.00 18.38 ? 6 DG A "O3'" 1 ATOM 108 C "C2'" . DG A 1 6 ? 18.926 8.787 1.387 1.00 16.24 ? 6 DG A "C2'" 1 ATOM 109 C "C1'" . DG A 1 6 ? 17.582 9.418 1.605 1.00 14.69 ? 6 DG A "C1'" 1 ATOM 110 N N9 . DG A 1 6 ? 17.669 10.886 1.600 1.00 12.85 ? 6 DG A N9 1 ATOM 111 C C8 . DG A 1 6 ? 18.757 11.703 1.653 1.00 12.46 ? 6 DG A C8 1 ATOM 112 N N7 . DG A 1 6 ? 18.449 13.036 1.663 1.00 11.91 ? 6 DG A N7 1 ATOM 113 C C5 . DG A 1 6 ? 17.055 12.954 1.653 1.00 11.32 ? 6 DG A C5 1 ATOM 114 C C6 . DG A 1 6 ? 16.127 14.031 1.637 1.00 10.50 ? 6 DG A C6 1 ATOM 115 O O6 . DG A 1 6 ? 16.536 15.189 1.615 1.00 11.46 ? 6 DG A O6 1 ATOM 116 N N1 . DG A 1 6 ? 14.876 13.648 1.584 1.00 10.32 ? 6 DG A N1 1 ATOM 117 C C2 . DG A 1 6 ? 14.476 12.377 1.525 1.00 10.06 ? 6 DG A C2 1 ATOM 118 N N2 . DG A 1 6 ? 13.222 12.050 1.467 1.00 10.66 ? 6 DG A N2 1 ATOM 119 N N3 . DG A 1 6 ? 15.316 11.320 1.499 1.00 11.34 ? 6 DG A N3 1 ATOM 120 C C4 . DG A 1 6 ? 16.590 11.729 1.568 1.00 11.24 ? 6 DG A C4 1 HETATM 121 C C1 . DM4 B 2 . ? 15.214 18.399 4.953 1.00 16.52 ? 7 DM4 A C1 1 HETATM 122 C C2 . DM4 B 2 . ? 16.392 19.219 4.905 1.00 16.09 ? 7 DM4 A C2 1 HETATM 123 C C3 . DM4 B 2 . ? 17.711 18.630 4.841 1.00 16.62 ? 7 DM4 A C3 1 HETATM 124 C C4 . DM4 B 2 . ? 17.846 17.187 4.820 1.00 16.23 ? 7 DM4 A C4 1 HETATM 125 O O4 . DM4 B 2 . ? 19.007 16.547 4.846 1.00 17.07 ? 7 DM4 A O4 1 HETATM 126 C C5 . DM4 B 2 . ? 16.649 16.451 4.868 1.00 16.27 ? 7 DM4 A C5 1 HETATM 127 C C6 . DM4 B 2 . ? 16.730 14.969 4.868 1.00 15.72 ? 7 DM4 A C6 1 HETATM 128 O O6 . DM4 B 2 . ? 17.762 14.276 4.799 1.00 16.55 ? 7 DM4 A O6 1 HETATM 129 C C7 . DM4 B 2 . ? 15.488 14.186 4.921 1.00 15.96 ? 7 DM4 A C7 1 HETATM 130 C C8 . DM4 B 2 . ? 15.547 12.819 4.894 1.00 16.62 ? 7 DM4 A C8 1 HETATM 131 O O8 . DM4 B 2 . ? 16.683 12.179 4.830 1.00 16.80 ? 7 DM4 A O8 1 HETATM 132 C C9 . DM4 B 2 . ? 14.335 12.126 4.921 1.00 17.66 ? 7 DM4 A C9 1 HETATM 133 C C10 . DM4 B 2 . ? 14.389 10.548 4.862 1.00 19.19 ? 7 DM4 A C10 1 HETATM 134 O O10 . DM4 B 2 . ? 15.127 10.353 6.079 1.00 21.71 ? 7 DM4 A O10 1 HETATM 135 C C11 . DM4 B 2 . ? 13.132 9.838 4.809 1.00 19.56 ? 7 DM4 A C11 1 HETATM 136 C C12 . DM4 B 2 . ? 11.903 10.514 5.357 1.00 20.17 ? 7 DM4 A C12 1 HETATM 137 O O12 . DM4 B 2 . ? 11.979 10.537 6.834 1.00 19.95 ? 7 DM4 A O12 1 HETATM 138 C C13 . DM4 B 2 . ? 10.635 9.781 4.969 1.00 20.59 ? 7 DM4 A C13 1 HETATM 139 O O13 . DM4 B 2 . ? 9.860 10.396 4.150 1.00 21.96 ? 7 DM4 A O13 1 HETATM 140 C C14 . DM4 B 2 . ? 9.821 8.722 5.787 1.00 22.13 ? 7 DM4 A C14 1 HETATM 141 O O14 . DM4 B 2 . ? 8.885 7.513 5.532 1.00 25.11 ? 7 DM4 A O14 1 HETATM 142 C C15 . DM4 B 2 . ? 11.802 12.078 4.963 1.00 19.01 ? 7 DM4 A C15 1 HETATM 143 C C16 . DM4 B 2 . ? 13.090 12.723 4.915 1.00 17.53 ? 7 DM4 A C16 1 HETATM 144 C C17 . DM4 B 2 . ? 13.081 14.079 4.931 1.00 16.69 ? 7 DM4 A C17 1 HETATM 145 C C18 . DM4 B 2 . ? 14.194 14.893 4.953 1.00 15.88 ? 7 DM4 A C18 1 HETATM 146 C C19 . DM4 B 2 . ? 14.166 16.327 4.995 1.00 15.98 ? 7 DM4 A C19 1 HETATM 147 O O19 . DM4 B 2 . ? 13.138 17.026 5.000 1.00 17.13 ? 7 DM4 A O19 1 HETATM 148 C C20 . DM4 B 2 . ? 15.389 17.052 4.947 1.00 15.80 ? 7 DM4 A C20 1 HETATM 149 C "C1'" . DM4 B 2 . ? 15.978 9.297 6.377 1.00 23.18 ? 7 DM4 A "C1'" 1 HETATM 150 C "C2'" . DM4 B 2 . ? 17.069 9.688 7.344 1.00 23.73 ? 7 DM4 A "C2'" 1 HETATM 151 C "C3'" . DM4 B 2 . ? 16.432 10.145 8.678 1.00 24.79 ? 7 DM4 A "C3'" 1 HETATM 152 N "N3'" . DM4 B 2 . ? 17.565 10.390 9.682 1.00 24.65 ? 7 DM4 A "N3'" 1 HETATM 153 C "C4'" . DM4 B 2 . ? 15.485 9.032 9.214 1.00 24.84 ? 7 DM4 A "C4'" 1 HETATM 154 O "O4'" . DM4 B 2 . ? 16.401 7.935 9.438 1.00 26.13 ? 7 DM4 A "O4'" 1 HETATM 155 C "C5'" . DM4 B 2 . ? 14.397 8.716 8.189 1.00 24.93 ? 7 DM4 A "C5'" 1 HETATM 156 O "O5'" . DM4 B 2 . ? 15.110 8.212 6.919 1.00 24.31 ? 7 DM4 A "O5'" 1 HETATM 157 C "C6'" . DM4 B 2 . ? 13.439 7.513 8.540 1.00 25.11 ? 7 DM4 A "C6'" 1 HETATM 158 O O . HOH C 3 . ? 18.627 21.451 13.503 1.00 54.31 ? 8 HOH A O 1 HETATM 159 O O . HOH C 3 . ? 13.005 19.148 14.614 1.00 37.54 ? 9 HOH A O 1 HETATM 160 O O . HOH C 3 . ? 24.973 16.818 16.569 1.00 57.22 ? 10 HOH A O 1 HETATM 161 O O . HOH C 3 . ? 21.515 18.633 9.326 1.00 44.78 ? 11 HOH A O 1 HETATM 162 O O . HOH C 3 . ? 8.386 16.976 17.892 1.00 56.17 ? 12 HOH A O 1 HETATM 163 O O . HOH C 3 . ? 18.063 20.211 8.439 1.00 40.86 ? 13 HOH A O 1 HETATM 164 O O . HOH C 3 . ? 11.216 21.837 19.067 1.00 26.94 ? 14 HOH A O 1 HETATM 165 O O . HOH C 3 . ? 16.854 23.525 6.754 1.00 49.08 ? 15 HOH A O 1 HETATM 166 O O . HOH C 3 . ? 14.344 7.172 3.906 1.00 35.20 ? 16 HOH A O 1 HETATM 167 O O . HOH C 3 . ? 10.066 21.315 2.529 1.00 39.22 ? 17 HOH A O 1 HETATM 168 O O . HOH C 3 . ? 14.191 8.770 1.605 1.00 29.65 ? 18 HOH A O 1 HETATM 169 O O . HOH C 3 . ? 20.143 14.665 1.966 1.00 32.59 ? 19 HOH A O 1 HETATM 170 O O . HOH C 3 . ? 9.218 12.306 1.631 1.00 33.85 ? 20 HOH A O 1 HETATM 171 O O . HOH C 3 . ? 11.523 9.886 1.275 1.00 49.40 ? 21 HOH A O 1 HETATM 172 O O . HOH C 3 . ? 20.326 14.696 -1.339 1.00 36.67 ? 22 HOH A O 1 HETATM 173 O O . HOH C 3 . ? 17.880 17.170 1.440 1.00 24.05 ? 23 HOH A O 1 HETATM 174 O O . HOH C 3 . ? 15.564 5.360 0.260 1.00 42.11 ? 24 HOH A O 1 HETATM 175 O O . HOH C 3 . ? 14.704 21.279 12.063 1.00 50.82 ? 25 HOH A O 1 HETATM 176 O O . HOH C 3 . ? 22.552 22.488 20.273 1.00 56.79 ? 26 HOH A O 1 HETATM 177 O O . HOH C 3 . ? 19.498 20.721 5.399 1.00 71.97 ? 27 HOH A O 1 HETATM 178 O O . HOH C 3 . ? 23.026 16.384 0.967 1.00 65.42 ? 28 HOH A O 1 HETATM 179 O O . HOH C 3 . ? 11.311 6.848 1.419 1.00 59.47 ? 29 HOH A O 1 HETATM 180 O O . HOH C 3 . ? 23.105 10.421 0.287 1.00 64.55 ? 30 HOH A O 1 HETATM 181 O O . HOH C 3 . ? 20.470 9.209 11.011 1.00 44.83 ? 31 HOH A O 1 HETATM 182 O O . HOH C 3 . ? 21.918 16.420 7.732 1.00 64.46 ? 32 HOH A O 1 HETATM 183 O O . HOH C 3 . ? 11.875 25.241 5.638 1.00 64.65 ? 33 HOH A O 1 HETATM 184 O O . HOH C 3 . ? 11.884 4.870 -1.366 1.00 54.78 ? 34 HOH A O 1 HETATM 185 O O . HOH C 3 . ? 11.275 21.307 14.459 1.00 51.09 ? 35 HOH A O 1 HETATM 186 O O . HOH C 3 . ? 3.249 13.453 6.754 1.00 61.47 ? 36 HOH A O 1 HETATM 187 O O . HOH C 3 . ? 8.375 20.808 15.416 1.00 53.51 ? 37 HOH A O 1 HETATM 188 O O . HOH C 3 . ? 5.867 15.333 17.451 1.00 53.28 ? 38 HOH A O 1 HETATM 189 O O . HOH C 3 . ? 19.210 23.274 20.517 1.00 42.32 ? 39 HOH A O 1 HETATM 190 O O . HOH C 3 . ? 11.805 3.280 4.336 1.00 53.64 ? 40 HOH A O 1 HETATM 191 O O . HOH C 3 . ? 22.403 14.183 -3.433 1.00 57.33 ? 41 HOH A O 1 HETATM 192 O O . HOH C 3 . ? 9.863 6.346 -2.641 1.00 50.57 ? 42 HOH A O 1 HETATM 193 O O . HOH C 3 . ? 20.211 19.191 11.638 1.00 52.26 ? 43 HOH A O 1 HETATM 194 O O . HOH C 3 . ? 6.298 17.553 15.442 1.00 53.20 ? 44 HOH A O 1 HETATM 195 O O . HOH C 3 . ? 10.043 16.854 14.964 1.00 49.01 ? 45 HOH A O 1 HETATM 196 O O . HOH C 3 . ? 23.223 16.674 19.178 1.00 59.75 ? 46 HOH A O 1 HETATM 197 O O . HOH C 3 . ? 21.628 19.346 6.010 1.00 47.92 ? 47 HOH A O 1 HETATM 198 O O . HOH C 3 . ? 16.184 6.047 5.367 1.00 53.48 ? 48 HOH A O 1 HETATM 199 O O . HOH C 3 . ? 12.904 20.952 5.457 1.00 49.86 ? 49 HOH A O 1 #