HEADER ELONGATION FACTOR 29-MAY-87 1EFM TITLE STRUCTURE OF THE GDP DOMAIN OF EF-TU AND LOCATION OF THE AMINO ACIDS TITLE 2 HOMOLOGOUS TO RAS ONCOGENE PROTEINS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELONGATION FACTOR TU; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562 KEYWDS ELONGATION FACTOR EXPDTA X-RAY DIFFRACTION MDLTYP CA ATOMS ONLY, CHAIN A AUTHOR F.JURNAK REVDAT 4 07-FEB-24 1EFM 1 REMARK SEQADV REVDAT 3 24-FEB-09 1EFM 1 VERSN REVDAT 2 15-OCT-91 1EFM 1 REMARK REVDAT 1 16-JUL-87 1EFM 0 JRNL AUTH F.JURNAK JRNL TITL STRUCTURE OF THE GDP DOMAIN OF EF-TU AND LOCATION OF THE JRNL TITL 2 AMINO ACIDS HOMOLOGOUS TO RAS ONCOGENE PROTEINS. JRNL REF SCIENCE V. 230 32 1985 JRNL REFN ISSN 0036-8075 JRNL PMID 3898365 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.JURNAK,A.MCPHERSON,A.H.J.WANG,A.RICH REMARK 1 TITL BIOCHEMICAL AND STRUCTURAL STUDIES OF THE TETRAGONAL REMARK 1 TITL 2 CRYSTALLINE MODIFICATION OF THE ESCHERICHIA COLI ELONGATION REMARK 1 TITL 3 FACTOR TU REMARK 1 REF J.BIOL.CHEM. V. 255 6751 1980 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 2 REMARK 1 AUTH F.JURNAK,A.RICH,D.MILLER REMARK 1 TITL PRELIMINARY X-RAY DIFFRACTION DATA FOR TETRAGONAL CRYSTALS REMARK 1 TITL 2 OF TRYPSINIZED ESCHERICHIA COLI ELONGATION FACTOR REMARK 1 REF J.MOL.BIOL. V. 115 103 1977 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH K.ARAI,B.F.C.CLARK,L.DUFFY,M.D.JONES,Y.KAZIRO,R.A.LAURSEN, REMARK 1 AUTH 2 J.L'ITALIEN,D.L.MILLER,S.NAGARKATTI,S.NAKAMURA,K.M.NIELSEN, REMARK 1 AUTH 3 T.E.PETERSEN,K.TAKAHASHI,M.WADE REMARK 1 TITL PRIMARY STRUCTURE OF ELONGATION FACTOR TU FROM ESCHERICHIA REMARK 1 TITL 2 COLI REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 77 1326 1980 REMARK 1 REFN ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 158 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1EFM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173034. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.23250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.23250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 49.30450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.40350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 49.30450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.40350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 81.23250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 49.30450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.40350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 81.23250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 49.30450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.40350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 TRYPSIN-MODIFIED EF-TU CONTAINS TWO MAJOR FRAGMENTS REMARK 400 CONSISTING OF RESIDUES 1-44 AND 59-393. RESIDUES 45-58 REMARK 400 HAVE BEEN EXCISED. TO CLARIFY THIS RELATIONSHIP, THE REMARK 400 PROTEIN IS REPRESENTED BY ONE SET OF SEQRES RECORDS WITH REMARK 400 EXC IN PLACE OF RESIDUES 45-58. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 LYS A 2 REMARK 465 GLU A 3 REMARK 465 LYS A 4 REMARK 465 PHE A 5 REMARK 465 GLU A 6 REMARK 465 ARG A 7 REMARK 465 THR A 8 REMARK 465 LYS A 9 REMARK 465 PRO A 10 REMARK 465 HIS A 11 REMARK 465 GLY A 40 REMARK 465 GLY A 41 REMARK 465 ALA A 42 REMARK 465 ALA A 43 REMARK 465 ARG A 44 REMARK 465 GLY A 59 REMARK 465 ILE A 60 REMARK 465 LEU A 191 REMARK 465 ALA A 192 REMARK 465 GLY A 193 REMARK 465 PHE A 194 REMARK 465 LEU A 195 REMARK 465 ASP A 196 REMARK 465 SER A 197 REMARK 465 TYR A 198 REMARK 465 ILE A 199 REMARK 465 PRO A 200 REMARK 465 GLU A 201 REMARK 465 PRO A 202 REMARK 465 GLU A 203 REMARK 465 ARG A 204 REMARK 465 ALA A 205 REMARK 465 ILE A 206 REMARK 465 ASP A 207 REMARK 465 LYS A 208 REMARK 465 PRO A 209 REMARK 465 PHE A 210 REMARK 465 LEU A 211 REMARK 465 LEU A 212 REMARK 465 PRO A 213 REMARK 465 ILE A 214 REMARK 465 GLU A 215 REMARK 465 ASP A 216 REMARK 465 VAL A 217 REMARK 465 PHE A 218 REMARK 465 SER A 219 REMARK 465 ILE A 220 REMARK 465 SER A 221 REMARK 465 GLY A 222 REMARK 465 ARG A 223 REMARK 465 GLY A 224 REMARK 465 THR A 225 REMARK 465 VAL A 226 REMARK 465 VAL A 227 REMARK 465 THR A 228 REMARK 465 GLY A 229 REMARK 465 ARG A 230 REMARK 465 VAL A 231 REMARK 465 GLU A 232 REMARK 465 ARG A 233 REMARK 465 GLY A 234 REMARK 465 ILE A 235 REMARK 465 ILE A 236 REMARK 465 LYS A 237 REMARK 465 VAL A 238 REMARK 465 GLY A 239 REMARK 465 GLU A 240 REMARK 465 GLU A 241 REMARK 465 VAL A 242 REMARK 465 GLU A 243 REMARK 465 ILE A 244 REMARK 465 VAL A 245 REMARK 465 GLY A 246 REMARK 465 ILE A 247 REMARK 465 LYS A 248 REMARK 465 GLU A 249 REMARK 465 THR A 250 REMARK 465 GLN A 251 REMARK 465 LYS A 252 REMARK 465 SER A 253 REMARK 465 THR A 254 REMARK 465 CYS A 255 REMARK 465 THR A 256 REMARK 465 GLY A 257 REMARK 465 VAL A 258 REMARK 465 GLU A 259 REMARK 465 MET A 260 REMARK 465 PHE A 261 REMARK 465 ARG A 262 REMARK 465 LYS A 263 REMARK 465 LEU A 264 REMARK 465 LEU A 265 REMARK 465 ASP A 266 REMARK 465 GLU A 267 REMARK 465 GLY A 268 REMARK 465 ARG A 269 REMARK 465 ALA A 270 REMARK 465 GLY A 271 REMARK 465 GLU A 272 REMARK 465 ASN A 273 REMARK 465 VAL A 274 REMARK 465 GLY A 275 REMARK 465 VAL A 276 REMARK 465 LEU A 277 REMARK 465 LEU A 278 REMARK 465 ARG A 279 REMARK 465 GLY A 280 REMARK 465 ILE A 281 REMARK 465 LYS A 282 REMARK 465 ARG A 283 REMARK 465 GLU A 284 REMARK 465 GLU A 285 REMARK 465 ILE A 286 REMARK 465 GLU A 287 REMARK 465 ARG A 288 REMARK 465 GLY A 289 REMARK 465 GLN A 290 REMARK 465 VAL A 291 REMARK 465 LEU A 292 REMARK 465 ALA A 293 REMARK 465 LYS A 294 REMARK 465 PRO A 295 REMARK 465 GLY A 296 REMARK 465 THR A 297 REMARK 465 ILE A 298 REMARK 465 LYS A 299 REMARK 465 PRO A 300 REMARK 465 HIS A 301 REMARK 465 THR A 302 REMARK 465 LYS A 303 REMARK 465 PHE A 304 REMARK 465 GLU A 305 REMARK 465 SER A 306 REMARK 465 GLU A 307 REMARK 465 VAL A 308 REMARK 465 TYR A 309 REMARK 465 ILE A 310 REMARK 465 LEU A 311 REMARK 465 SER A 312 REMARK 465 LYS A 313 REMARK 465 ASP A 314 REMARK 465 GLU A 315 REMARK 465 GLY A 316 REMARK 465 GLY A 317 REMARK 465 ARG A 318 REMARK 465 HIS A 319 REMARK 465 THR A 320 REMARK 465 PRO A 321 REMARK 465 PHE A 322 REMARK 465 PHE A 323 REMARK 465 LYS A 324 REMARK 465 GLY A 325 REMARK 465 TYR A 326 REMARK 465 ARG A 327 REMARK 465 PRO A 328 REMARK 465 GLN A 329 REMARK 465 PHE A 330 REMARK 465 TYR A 331 REMARK 465 PHE A 332 REMARK 465 ARG A 333 REMARK 465 THR A 334 REMARK 465 THR A 335 REMARK 465 ASP A 336 REMARK 465 VAL A 337 REMARK 465 THR A 338 REMARK 465 GLY A 339 REMARK 465 THR A 340 REMARK 465 ILE A 341 REMARK 465 GLU A 342 REMARK 465 LEU A 343 REMARK 465 PRO A 344 REMARK 465 GLU A 345 REMARK 465 GLY A 346 REMARK 465 VAL A 347 REMARK 465 GLU A 348 REMARK 465 MET A 349 REMARK 465 VAL A 350 REMARK 465 MET A 351 REMARK 465 PRO A 352 REMARK 465 GLY A 353 REMARK 465 ASP A 354 REMARK 465 ASN A 355 REMARK 465 ILE A 356 REMARK 465 LYS A 357 REMARK 465 MET A 358 REMARK 465 VAL A 359 REMARK 465 VAL A 360 REMARK 465 THR A 361 REMARK 465 LEU A 362 REMARK 465 ILE A 363 REMARK 465 HIS A 364 REMARK 465 PRO A 365 REMARK 465 ILE A 366 REMARK 465 ALA A 367 REMARK 465 MET A 368 REMARK 465 ASP A 369 REMARK 465 ASP A 370 REMARK 465 GLY A 371 REMARK 465 LEU A 372 REMARK 465 ARG A 373 REMARK 465 PHE A 374 REMARK 465 ALA A 375 REMARK 465 ILE A 376 REMARK 465 ARG A 377 REMARK 465 GLU A 378 REMARK 465 GLY A 379 REMARK 465 GLY A 380 REMARK 465 ARG A 381 REMARK 465 THR A 382 REMARK 465 VAL A 383 REMARK 465 GLY A 384 REMARK 465 ALA A 385 REMARK 465 GLY A 386 REMARK 465 VAL A 387 REMARK 465 VAL A 388 REMARK 465 ALA A 389 REMARK 465 LYS A 390 REMARK 465 VAL A 391 REMARK 465 LEU A 392 REMARK 465 SER A 393 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 394 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 395 DBREF 1EFM A 1 393 UNP P02990 EFTU_ECOLI 1 393 SEQADV 1EFM A UNP P02990 ALA 43 DELETION SEQADV 1EFM A UNP P02990 ARG 44 DELETION SEQADV 1EFM A UNP P02990 ALA 45 DELETION SEQADV 1EFM A UNP P02990 PHE 46 DELETION SEQADV 1EFM A UNP P02990 ASP 47 DELETION SEQADV 1EFM A UNP P02990 GLN 48 DELETION SEQADV 1EFM A UNP P02990 ILE 49 DELETION SEQADV 1EFM A UNP P02990 ASP 50 DELETION SEQADV 1EFM A UNP P02990 ASN 51 DELETION SEQADV 1EFM A UNP P02990 ALA 52 DELETION SEQADV 1EFM A UNP P02990 PRO 53 DELETION SEQADV 1EFM A UNP P02990 GLU 54 DELETION SEQADV 1EFM A UNP P02990 GLU 55 DELETION SEQADV 1EFM A UNP P02990 LYS 56 DELETION SEQRES 1 A 379 SER LYS GLU LYS PHE GLU ARG THR LYS PRO HIS VAL ASN SEQRES 2 A 379 VAL GLY THR ILE GLY HIS VAL ASP HIS GLY LYS THR THR SEQRES 3 A 379 LEU THR ALA ALA ILE THR THR VAL LEU ALA LYS THR TYR SEQRES 4 A 379 GLY GLY ALA ALA ARG GLY ILE THR ILE ASN THR SER HIS SEQRES 5 A 379 VAL GLU TYR ASP THR PRO THR ARG HIS TYR ALA HIS VAL SEQRES 6 A 379 ASP CYS PRO GLY HIS ALA ASP TYR VAL LYS ASN MET ILE SEQRES 7 A 379 THR GLY ALA ALA GLN MET ASP GLY ALA ILE LEU VAL VAL SEQRES 8 A 379 ALA ALA THR ASP GLY PRO MET PRO GLN THR ARG GLU HIS SEQRES 9 A 379 ILE LEU LEU GLY ARG GLN VAL GLY VAL PRO TYR ILE ILE SEQRES 10 A 379 VAL PHE LEU ASN LYS CYS ASP MET VAL ASP ASP GLU GLU SEQRES 11 A 379 LEU LEU GLU LEU VAL GLU MET GLU VAL ARG GLU LEU LEU SEQRES 12 A 379 SER GLN TYR ASP PHE PRO GLY ASP ASP THR PRO ILE VAL SEQRES 13 A 379 ARG GLY SER ALA LEU LYS ALA LEU GLU GLY ASP ALA GLU SEQRES 14 A 379 TRP GLU ALA LYS ILE LEU GLU LEU ALA GLY PHE LEU ASP SEQRES 15 A 379 SER TYR ILE PRO GLU PRO GLU ARG ALA ILE ASP LYS PRO SEQRES 16 A 379 PHE LEU LEU PRO ILE GLU ASP VAL PHE SER ILE SER GLY SEQRES 17 A 379 ARG GLY THR VAL VAL THR GLY ARG VAL GLU ARG GLY ILE SEQRES 18 A 379 ILE LYS VAL GLY GLU GLU VAL GLU ILE VAL GLY ILE LYS SEQRES 19 A 379 GLU THR GLN LYS SER THR CYS THR GLY VAL GLU MET PHE SEQRES 20 A 379 ARG LYS LEU LEU ASP GLU GLY ARG ALA GLY GLU ASN VAL SEQRES 21 A 379 GLY VAL LEU LEU ARG GLY ILE LYS ARG GLU GLU ILE GLU SEQRES 22 A 379 ARG GLY GLN VAL LEU ALA LYS PRO GLY THR ILE LYS PRO SEQRES 23 A 379 HIS THR LYS PHE GLU SER GLU VAL TYR ILE LEU SER LYS SEQRES 24 A 379 ASP GLU GLY GLY ARG HIS THR PRO PHE PHE LYS GLY TYR SEQRES 25 A 379 ARG PRO GLN PHE TYR PHE ARG THR THR ASP VAL THR GLY SEQRES 26 A 379 THR ILE GLU LEU PRO GLU GLY VAL GLU MET VAL MET PRO SEQRES 27 A 379 GLY ASP ASN ILE LYS MET VAL VAL THR LEU ILE HIS PRO SEQRES 28 A 379 ILE ALA MET ASP ASP GLY LEU ARG PHE ALA ILE ARG GLU SEQRES 29 A 379 GLY GLY ARG THR VAL GLY ALA GLY VAL VAL ALA LYS VAL SEQRES 30 A 379 LEU SER HET MG A 394 1 HET GDP A 395 28 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 2 MG MG 2+ FORMUL 3 GDP C10 H15 N5 O11 P2 SITE 1 AC1 1 GDP A 395 SITE 1 AC2 7 VAL A 20 ASP A 21 GLY A 23 LYS A 24 SITE 2 AC2 7 THR A 25 LEU A 175 MG A 394 CRYST1 98.609 100.807 162.465 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010141 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009920 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006155 0.00000 ATOM 1 CA VAL A 12 52.217 65.390 -3.191 1.00 0.00 C ATOM 2 CA ASN A 13 55.165 63.061 -3.434 1.00 0.00 C ATOM 3 CA VAL A 14 58.206 64.148 -5.204 1.00 0.00 C ATOM 4 CA GLY A 15 61.232 61.976 -5.500 1.00 0.00 C ATOM 5 CA THR A 16 64.889 62.250 -6.161 1.00 0.00 C ATOM 6 CA ILE A 17 66.649 61.542 -9.496 1.00 0.00 C ATOM 7 CA GLY A 18 70.216 62.716 -9.944 1.00 0.00 C ATOM 8 CA HIS A 19 73.610 61.337 -10.806 1.00 0.00 C ATOM 9 CA VAL A 20 75.512 59.105 -8.372 1.00 0.00 C ATOM 10 CA ASP A 21 77.360 60.778 -5.536 1.00 0.00 C ATOM 11 CA HIS A 22 75.859 64.161 -6.325 1.00 0.00 C ATOM 12 CA GLY A 23 74.353 63.421 -3.174 1.00 0.00 C ATOM 13 CA LYS A 24 70.709 62.708 -3.507 1.00 0.00 C ATOM 14 CA THR A 25 71.053 61.084 0.080 1.00 0.00 C ATOM 15 CA THR A 26 72.423 64.367 1.398 1.00 0.00 C ATOM 16 CA LEU A 27 69.389 66.309 0.047 1.00 0.00 C ATOM 17 CA THR A 28 66.635 64.153 1.621 1.00 0.00 C ATOM 18 CA ALA A 29 67.901 64.791 5.132 1.00 0.00 C ATOM 19 CA ALA A 30 67.895 68.530 4.455 1.00 0.00 C ATOM 20 CA ILE A 31 64.215 68.836 3.643 1.00 0.00 C ATOM 21 CA THR A 32 63.292 66.666 6.619 1.00 0.00 C ATOM 22 CA THR A 33 65.986 67.934 9.019 1.00 0.00 C ATOM 23 CA VAL A 34 65.558 71.619 8.205 1.00 0.00 C ATOM 24 CA LEU A 35 61.742 71.566 8.026 1.00 0.00 C ATOM 25 CA ALA A 36 61.165 70.035 11.412 1.00 0.00 C ATOM 26 CA LYS A 37 63.660 72.232 13.110 1.00 0.00 C ATOM 27 CA THR A 38 62.611 75.195 11.139 1.00 0.00 C ATOM 28 CA TYR A 39 58.962 74.392 10.935 1.00 0.00 C ATOM 29 CA THR A 61 65.582 49.461 -3.887 1.00 0.00 C ATOM 30 CA ILE A 62 63.739 51.849 -1.591 1.00 0.00 C ATOM 31 CA ASN A 63 64.165 55.048 0.383 1.00 0.00 C ATOM 32 CA THR A 64 60.989 56.565 1.829 1.00 0.00 C ATOM 33 CA SER A 65 60.432 59.921 3.208 1.00 0.00 C ATOM 34 CA HIS A 66 57.751 61.908 4.770 1.00 0.00 C ATOM 35 CA VAL A 67 58.217 65.328 5.846 1.00 0.00 C ATOM 36 CA GLU A 68 55.453 67.584 6.038 1.00 0.00 C ATOM 37 CA TYR A 69 56.529 70.722 5.299 1.00 0.00 C ATOM 38 CA ASP A 70 55.740 72.789 2.607 1.00 0.00 C ATOM 39 CA THR A 71 55.660 74.643 5.647 1.00 0.00 C ATOM 40 CA PRO A 72 52.447 74.328 4.554 1.00 0.00 C ATOM 41 CA THR A 73 50.241 73.179 2.017 1.00 0.00 C ATOM 42 CA ARG A 74 52.245 70.053 1.175 1.00 0.00 C ATOM 43 CA HIS A 75 52.912 66.445 2.104 1.00 0.00 C ATOM 44 CA TYR A 76 55.696 64.487 0.491 1.00 0.00 C ATOM 45 CA ALA A 77 56.823 60.975 -0.021 1.00 0.00 C ATOM 46 CA HIS A 78 60.456 61.206 -0.820 1.00 0.00 C ATOM 47 CA VAL A 79 61.985 58.368 -2.291 1.00 0.00 C ATOM 48 CA ASP A 80 65.713 58.134 -2.913 1.00 0.00 C ATOM 49 CA CYS A 81 67.316 54.991 -4.637 1.00 0.00 C ATOM 50 CA PRO A 82 71.060 53.963 -4.651 1.00 0.00 C ATOM 51 CA GLY A 83 72.724 52.512 -7.795 1.00 0.00 C ATOM 52 CA HIS A 84 71.727 53.138 -11.438 1.00 0.00 C ATOM 53 CA ALA A 85 69.005 50.360 -12.034 1.00 0.00 C ATOM 54 CA ASP A 86 66.469 51.093 -9.206 1.00 0.00 C ATOM 55 CA TYR A 87 65.408 54.569 -10.515 1.00 0.00 C ATOM 56 CA VAL A 88 65.697 53.200 -13.894 1.00 0.00 C ATOM 57 CA LYS A 89 64.121 49.864 -13.215 1.00 0.00 C ATOM 58 CA ASN A 90 62.009 51.495 -10.600 1.00 0.00 C ATOM 59 CA MET A 91 60.812 54.450 -12.779 1.00 0.00 C ATOM 60 CA ILE A 92 59.188 52.242 -15.529 1.00 0.00 C ATOM 61 CA THR A 93 57.524 49.794 -13.014 1.00 0.00 C ATOM 62 CA GLY A 94 54.885 52.274 -11.739 1.00 0.00 C ATOM 63 CA ALA A 95 57.154 51.631 -8.852 1.00 0.00 C ATOM 64 CA ALA A 96 58.059 55.162 -8.485 1.00 0.00 C ATOM 65 CA GLN A 97 54.918 56.894 -8.180 1.00 0.00 C ATOM 66 CA MET A 98 56.213 60.066 -8.874 1.00 0.00 C ATOM 67 CA ASP A 99 54.739 63.450 -9.018 1.00 0.00 C ATOM 68 CA GLY A 100 57.718 65.706 -8.292 1.00 0.00 C ATOM 69 CA ALA A 101 61.131 65.528 -9.914 1.00 0.00 C ATOM 70 CA ILE A 102 64.161 66.864 -8.048 1.00 0.00 C ATOM 71 CA LEU A 103 67.280 66.674 -10.145 1.00 0.00 C ATOM 72 CA VAL A 104 70.508 67.212 -8.351 1.00 0.00 C ATOM 73 CA VAL A 105 73.666 67.759 -10.269 1.00 0.00 C ATOM 74 CA ALA A 106 76.531 68.531 -7.920 1.00 0.00 C ATOM 75 CA ALA A 107 78.018 72.027 -8.186 1.00 0.00 C ATOM 76 CA THR A 108 79.967 71.225 -11.308 1.00 0.00 C ATOM 77 CA ASP A 109 82.765 68.723 -11.348 1.00 0.00 C ATOM 78 CA GLY A 110 80.288 68.875 -14.142 1.00 0.00 C ATOM 79 CA PRO A 111 76.870 67.505 -15.152 1.00 0.00 C ATOM 80 CA MET A 112 77.880 64.210 -15.971 1.00 0.00 C ATOM 81 CA PRO A 113 75.745 61.507 -17.264 1.00 0.00 C ATOM 82 CA GLN A 114 72.472 59.747 -16.866 1.00 0.00 C ATOM 83 CA THR A 115 71.059 62.764 -15.263 1.00 0.00 C ATOM 84 CA ARG A 116 70.699 62.577 -19.082 1.00 0.00 C ATOM 85 CA GLU A 117 68.749 59.478 -18.032 1.00 0.00 C ATOM 86 CA HIS A 118 65.986 61.683 -16.629 1.00 0.00 C ATOM 87 CA ILE A 119 65.245 60.812 -20.188 1.00 0.00 C ATOM 88 CA LEU A 120 63.685 58.146 -18.181 1.00 0.00 C ATOM 89 CA LEU A 121 62.065 61.441 -17.109 1.00 0.00 C ATOM 90 CA GLY A 122 60.575 62.132 -20.551 1.00 0.00 C ATOM 91 CA ARG A 123 58.772 58.694 -20.504 1.00 0.00 C ATOM 92 CA GLN A 124 55.808 59.147 -18.332 1.00 0.00 C ATOM 93 CA VAL A 125 55.029 62.150 -16.499 1.00 0.00 C ATOM 94 CA GLY A 126 57.893 64.170 -15.269 1.00 0.00 C ATOM 95 CA VAL A 127 55.725 66.949 -14.562 1.00 0.00 C ATOM 96 CA PRO A 128 56.390 70.152 -13.053 1.00 0.00 C ATOM 97 CA TYR A 129 59.648 69.774 -11.792 1.00 0.00 C ATOM 98 CA ILE A 130 62.875 68.932 -12.589 1.00 0.00 C ATOM 99 CA ILE A 131 63.569 71.543 -10.013 1.00 0.00 C ATOM 100 CA VAL A 132 67.256 71.692 -10.156 1.00 0.00 C ATOM 101 CA PHE A 133 69.040 72.255 -7.094 1.00 0.00 C ATOM 102 CA LEU A 134 72.688 71.686 -7.567 1.00 0.00 C ATOM 103 CA ASN A 135 74.689 70.724 -4.808 1.00 0.00 C ATOM 104 CA LYS A 136 78.210 71.468 -3.893 1.00 0.00 C ATOM 105 CA CYS A 137 78.439 75.432 -4.089 1.00 0.00 C ATOM 106 CA ASP A 138 80.278 75.142 -0.853 1.00 0.00 C ATOM 107 CA MET A 139 83.373 74.115 -2.542 1.00 0.00 C ATOM 108 CA VAL A 140 83.353 76.560 -5.494 1.00 0.00 C ATOM 109 CA ASP A 141 82.739 80.514 -5.631 1.00 0.00 C ATOM 110 CA ASP A 142 82.414 80.777 -9.478 1.00 0.00 C ATOM 111 CA GLU A 143 83.674 82.369 -12.738 1.00 0.00 C ATOM 112 CA GLU A 144 80.288 81.045 -13.059 1.00 0.00 C ATOM 113 CA LEU A 145 81.115 77.484 -12.729 1.00 0.00 C ATOM 114 CA LEU A 146 78.049 77.434 -10.567 1.00 0.00 C ATOM 115 CA GLU A 147 75.966 78.787 -13.497 1.00 0.00 C ATOM 116 CA LEU A 148 77.701 77.638 -16.807 1.00 0.00 C ATOM 117 CA VAL A 149 77.935 73.913 -16.301 1.00 0.00 C ATOM 118 CA GLU A 150 74.861 73.886 -14.141 1.00 0.00 C ATOM 119 CA MET A 151 72.663 76.611 -15.604 1.00 0.00 C ATOM 120 CA GLU A 152 73.510 76.544 -19.299 1.00 0.00 C ATOM 121 CA VAL A 153 74.447 72.830 -19.411 1.00 0.00 C ATOM 122 CA ARG A 154 71.947 71.841 -16.689 1.00 0.00 C ATOM 123 CA GLU A 155 69.376 73.981 -18.476 1.00 0.00 C ATOM 124 CA LEU A 156 70.036 72.561 -21.985 1.00 0.00 C ATOM 125 CA LEU A 157 68.933 68.879 -21.557 1.00 0.00 C ATOM 126 CA SER A 158 65.530 69.914 -20.194 1.00 0.00 C ATOM 127 CA GLN A 159 64.500 70.564 -23.788 1.00 0.00 C ATOM 128 CA TYR A 160 65.054 66.811 -24.231 1.00 0.00 C ATOM 129 CA ASP A 161 61.563 65.586 -23.376 1.00 0.00 C ATOM 130 CA PHE A 162 60.082 68.903 -24.324 1.00 0.00 C ATOM 131 CA PRO A 163 59.786 70.377 -20.784 1.00 0.00 C ATOM 132 CA GLY A 164 60.674 74.131 -20.253 1.00 0.00 C ATOM 133 CA ASP A 165 64.466 74.424 -19.628 1.00 0.00 C ATOM 134 CA ASP A 166 64.944 78.299 -19.390 1.00 0.00 C ATOM 135 CA THR A 167 62.291 78.905 -16.770 1.00 0.00 C ATOM 136 CA PRO A 168 63.710 76.238 -14.550 1.00 0.00 C ATOM 137 CA ILE A 169 63.662 76.132 -10.886 1.00 0.00 C ATOM 138 CA VAL A 170 67.338 76.046 -10.176 1.00 0.00 C ATOM 139 CA ARG A 171 68.517 76.730 -6.645 1.00 0.00 C ATOM 140 CA GLY A 172 72.200 77.113 -5.689 1.00 0.00 C ATOM 141 CA SER A 173 72.839 73.995 -3.599 1.00 0.00 C ATOM 142 CA ALA A 174 74.813 73.512 -0.399 1.00 0.00 C ATOM 143 CA LEU A 175 74.380 69.886 0.775 1.00 0.00 C ATOM 144 CA LYS A 176 76.227 68.739 3.841 1.00 0.00 C ATOM 145 CA ALA A 177 76.352 72.262 5.203 1.00 0.00 C ATOM 146 CA LEU A 178 72.759 72.108 6.207 1.00 0.00 C ATOM 147 CA GLU A 179 72.942 69.487 8.879 1.00 0.00 C ATOM 148 CA GLY A 180 75.086 71.774 11.120 1.00 0.00 C ATOM 149 CA ASP A 181 76.940 74.201 8.765 1.00 0.00 C ATOM 150 CA ALA A 182 76.083 77.776 7.676 1.00 0.00 C ATOM 151 CA GLU A 183 72.619 78.892 8.850 1.00 0.00 C ATOM 152 CA TRP A 184 72.790 80.606 5.463 1.00 0.00 C ATOM 153 CA GLU A 185 72.811 77.344 3.535 1.00 0.00 C ATOM 154 CA ALA A 186 69.646 76.152 5.203 1.00 0.00 C ATOM 155 CA LYS A 187 68.036 79.152 3.613 1.00 0.00 C ATOM 156 CA ILE A 188 69.051 77.672 0.296 1.00 0.00 C ATOM 157 CA LEU A 189 67.123 74.462 0.981 1.00 0.00 C ATOM 158 CA GLU A 190 64.414 76.713 2.186 1.00 0.00 C TER 159 GLU A 190 HETATM 160 MG MG A 394 72.000 57.000 -2.000 1.00 0.00 MG HETATM 161 PB GDP A 395 74.197 59.921 -4.136 1.00 0.00 P HETATM 162 O1B GDP A 395 74.209 58.691 -4.942 1.00 0.00 O HETATM 163 O2B GDP A 395 72.825 59.857 -3.594 1.00 0.00 O HETATM 164 O3B GDP A 395 74.061 60.607 -5.427 1.00 0.00 O HETATM 165 O3A GDP A 395 75.240 60.873 -3.161 1.00 0.00 O HETATM 166 PA GDP A 395 75.139 60.923 -1.699 1.00 0.00 P HETATM 167 O1A GDP A 395 74.047 61.732 -1.248 1.00 0.00 O HETATM 168 O2A GDP A 395 75.148 59.547 -1.287 1.00 0.00 O HETATM 169 O5' GDP A 395 76.183 61.750 -1.167 1.00 0.00 O HETATM 170 C5' GDP A 395 77.496 61.802 -1.829 1.00 0.00 C HETATM 171 C4' GDP A 395 78.443 62.086 -0.931 1.00 0.00 C HETATM 172 O4' GDP A 395 79.157 63.233 -1.344 1.00 0.00 O HETATM 173 C3' GDP A 395 78.726 61.887 0.545 1.00 0.00 C HETATM 174 O3' GDP A 395 79.835 61.287 0.723 1.00 0.00 O HETATM 175 C2' GDP A 395 78.557 63.346 0.760 1.00 0.00 C HETATM 176 O2' GDP A 395 78.978 63.454 2.117 1.00 0.00 O HETATM 177 C1' GDP A 395 79.394 64.016 -0.283 1.00 0.00 C HETATM 178 N9 GDP A 395 78.565 65.195 -0.378 1.00 0.00 N HETATM 179 C8 GDP A 395 77.295 65.336 -0.601 1.00 0.00 C HETATM 180 N7 GDP A 395 76.843 66.570 -0.687 1.00 0.00 N HETATM 181 C5 GDP A 395 77.931 67.248 -0.560 1.00 0.00 C HETATM 182 C6 GDP A 395 78.071 68.664 -0.592 1.00 0.00 C HETATM 183 O6 GDP A 395 77.278 69.529 -0.814 1.00 0.00 O HETATM 184 N1 GDP A 395 79.333 68.944 -0.376 1.00 0.00 N HETATM 185 C2 GDP A 395 80.350 68.069 -0.144 1.00 0.00 C HETATM 186 N2 GDP A 395 81.473 68.496 0.049 1.00 0.00 N HETATM 187 N3 GDP A 395 80.209 66.741 -0.135 1.00 0.00 N HETATM 188 C4 GDP A 395 78.987 66.456 -0.344 1.00 0.00 C CONECT 161 162 163 164 165 CONECT 162 161 CONECT 163 161 CONECT 164 161 CONECT 165 161 166 CONECT 166 165 167 168 169 CONECT 167 166 CONECT 168 166 CONECT 169 166 170 CONECT 170 169 171 CONECT 171 170 172 173 CONECT 172 171 177 CONECT 173 171 174 175 CONECT 174 173 CONECT 175 173 176 177 CONECT 176 175 CONECT 177 172 175 178 CONECT 178 177 179 188 CONECT 179 178 180 CONECT 180 179 181 CONECT 181 180 182 188 CONECT 182 181 183 184 CONECT 183 182 CONECT 184 182 185 CONECT 185 184 186 187 CONECT 186 185 CONECT 187 185 188 CONECT 188 178 181 187 MASTER 480 0 2 0 0 0 3 6 187 1 28 30 END