data_1VT6 # _entry.id 1VT6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VT6 pdb_00001vt6 10.2210/pdb1vt6/pdb NDB ADH013 ? ? RCSB RCSB003030 ? ? WWPDB D_1000003030 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-07-13 2 'Structure model' 1 1 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VT6 _pdbx_database_status.recvd_initial_deposition_date 1988-08-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wang, A.H.-J.' 1 'Fujii, S.' 2 'Van Boom, J.H.' 3 'Rich, A.' 4 # _citation.id primary _citation.title 'Molecular structure of the octamer d(G-G-C-C-G-G-C-C): modified A-DNA.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 79 _citation.page_first 3968 _citation.page_last 3972 _citation.year 1982 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 6955784 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, A.H.' 1 ? primary 'Fujii, S.' 2 ? primary 'van Boom, J.H.' 3 ? primary 'Rich, A.' 4 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA (5'-D(*GP*GP*CP*CP*GP*GP*CP*C)-3') ; _entity.formula_weight 2428.593 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DC)(DC)(DG)(DG)(DC)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GGCCGGCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DC n 1 4 DC n 1 5 DG n 1 6 DG n 1 7 DC n 1 8 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Synthesized oligomer' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DG 5 5 5 DG G A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DC 8 8 8 DC C A . n # _cell.entry_id 1VT6 _cell.length_a 42.060 _cell.length_b 42.060 _cell.length_c 25.170 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1VT6 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1VT6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 46.33 _exptl_crystal.density_Matthews 2.29 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'Sodium cacodylate, spermine, MgCl2, pH 7.00' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER 1 2 3 1 2 1 'NA CACODYLATE' 4 5 6 1 3 1 SPERMINE 7 8 9 1 4 1 MGCL2 10 11 12 1 5 2 WATER 13 14 15 # _diffrn.id 1 _diffrn.ambient_temp 265.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'NICOLET P3' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'SEALED TUBE' _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1VT6 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high ? _reflns.number_obs 1224 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 1VT6 _refine.ls_number_reflns_obs 920 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I 3.000 _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 2.250 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1740000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1740000 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_phase_error ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 161 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 161 _refine_hist.d_res_high 2.250 _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 1VT6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1VT6 _struct.title 'Molecular structure of the octamer D(G-G-C-C-G-G-C-C) modified A-DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VT6 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'A-DNA, DOUBLE HELIX, DNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 1VT6 _struct_ref.pdbx_db_accession 1VT6 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code GGCCGGCC _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1VT6 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1VT6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 800 ? 1 MORE -7 ? 1 'SSA (A^2)' 3100 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 7 N3 ? ? A DG 2 A DC 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 7 O2 ? ? A DG 2 A DC 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 7 N4 ? ? A DG 2 A DC 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 3 A DG 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 3 A DG 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 3 A DG 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 N3 ? ? ? 1_555 A DG 5 N1 ? ? A DC 4 A DG 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DG 5 O6 ? ? A DC 4 A DG 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 4 O2 ? ? ? 1_555 A DG 5 N2 ? ? A DC 4 A DG 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DC 4 N3 ? ? A DG 5 A DC 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DC 4 O2 ? ? A DG 5 A DC 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DC 4 N4 ? ? A DG 5 A DC 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 3 N3 ? ? A DG 6 A DC 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 3 O2 ? ? A DG 6 A DC 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 3 N4 ? ? A DG 6 A DC 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 7 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 7 A DG 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 7 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 7 A DG 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 7 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 7 A DG 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C4'" A DG 1 ? ? "C3'" A DG 1 ? ? "C2'" A DG 1 ? ? 108.50 103.10 5.40 0.90 N 2 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 113.03 108.30 4.73 0.30 N 3 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 114.26 108.30 5.96 0.30 N 4 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DC 3 ? ? 110.13 119.70 -9.57 1.20 Y 5 1 "O5'" A DC 3 ? ? "C5'" A DC 3 ? ? "C4'" A DC 3 ? ? 102.83 109.40 -6.57 0.80 N 6 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 117.46 108.30 9.16 0.30 N 7 1 "O4'" A DC 4 ? ? "C1'" A DC 4 ? ? N1 A DC 4 ? ? 101.53 108.00 -6.47 0.70 N 8 1 "C3'" A DC 4 ? ? "O3'" A DC 4 ? ? P A DG 5 ? ? 107.96 119.70 -11.74 1.20 Y 9 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 115.04 108.30 6.74 0.30 N 10 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 100.95 108.00 -7.05 0.70 N 11 1 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 103.58 108.00 -4.42 0.70 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 # _ndb_struct_conf_na.entry_id 1VT6 _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 8 7_555 -0.161 -0.265 -0.535 3.915 -0.389 -2.382 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1 1 A DG 2 1_555 A DC 7 7_555 -0.194 -0.220 -0.333 0.816 -4.221 1.220 2 A_DG2:DC7_A A 2 ? A 7 ? 19 1 1 A DC 3 1_555 A DG 6 7_555 0.185 -0.197 -0.478 15.533 -9.319 -0.918 3 A_DC3:DG6_A A 3 ? A 6 ? 19 1 1 A DC 4 1_555 A DG 5 7_555 0.189 -0.289 0.011 -13.316 -0.415 -3.689 4 A_DC4:DG5_A A 4 ? A 5 ? 19 1 1 A DG 5 1_555 A DC 4 7_555 -0.189 -0.289 0.011 13.316 -0.415 -3.689 5 A_DG5:DC4_A A 5 ? A 4 ? 19 1 1 A DG 6 1_555 A DC 3 7_555 -0.185 -0.197 -0.478 -15.533 -9.319 -0.918 6 A_DG6:DC3_A A 6 ? A 3 ? 19 1 1 A DC 7 1_555 A DG 2 7_555 0.194 -0.220 -0.333 -0.816 -4.221 1.220 7 A_DC7:DG2_A A 7 ? A 2 ? 19 1 1 A DC 8 1_555 A DG 1 7_555 0.161 -0.265 -0.535 -3.915 -0.389 -2.382 8 A_DC8:DG1_A A 8 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 8 7_555 A DG 2 1_555 A DC 7 7_555 -0.324 -0.867 3.528 -3.732 12.813 35.276 -3.079 -0.003 3.059 20.269 5.904 37.641 1 AA_DG1DG2:DC7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ? 1 A DG 2 1_555 A DC 7 7_555 A DC 3 1_555 A DG 6 7_555 0.074 -1.230 3.002 -2.879 2.687 28.855 -2.975 -0.714 2.858 5.361 5.743 29.117 2 AA_DG2DC3:DG6DC7_AA A 2 ? A 7 ? A 3 ? A 6 ? 1 A DC 3 1_555 A DG 6 7_555 A DC 4 1_555 A DG 5 7_555 -0.029 -1.220 4.145 0.397 3.158 43.828 -2.006 0.085 4.051 4.225 -0.531 43.938 3 AA_DC3DC4:DG5DG6_AA A 3 ? A 6 ? A 4 ? A 5 ? 1 A DC 4 1_555 A DG 5 7_555 A DG 5 1_555 A DC 4 7_555 0.000 -2.150 2.657 0.000 14.737 13.268 -9.921 0.000 0.192 48.225 0.000 19.805 4 AA_DC4DG5:DC4DG5_AA A 4 ? A 5 ? A 5 ? A 4 ? 1 A DG 5 1_555 A DC 4 7_555 A DG 6 1_555 A DC 3 7_555 0.029 -1.220 4.145 -0.397 3.158 43.828 -2.006 -0.085 4.051 4.225 0.531 43.938 5 AA_DG5DG6:DC3DC4_AA A 5 ? A 4 ? A 6 ? A 3 ? 1 A DG 6 1_555 A DC 3 7_555 A DC 7 1_555 A DG 2 7_555 -0.074 -1.230 3.002 2.879 2.687 28.855 -2.975 0.714 2.858 5.361 -5.743 29.117 6 AA_DG6DC7:DG2DC3_AA A 6 ? A 3 ? A 7 ? A 2 ? 1 A DC 7 1_555 A DG 2 7_555 A DC 8 1_555 A DG 1 7_555 0.324 -0.867 3.528 3.732 12.813 35.276 -3.079 0.003 3.059 20.269 -5.904 37.641 7 AA_DC7DC8:DG1DG2_AA A 7 ? A 2 ? A 8 ? A 1 ? # _atom_sites.entry_id 1VT6 _atom_sites.fract_transf_matrix[1][1] 0.023776 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023776 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.039730 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? 7.758 -1.487 -6.171 1.00 10.00 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? 7.068 -2.339 -5.217 1.00 10.00 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? 8.002 -2.977 -4.204 1.00 10.00 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? 9.350 -3.112 -4.750 1.00 10.00 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? 8.180 -2.210 -2.912 1.00 10.00 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? 7.855 -3.003 -1.769 1.00 10.00 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? 9.641 -1.790 -2.796 1.00 10.00 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? 10.313 -2.410 -3.996 1.00 10.00 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? 10.961 -1.283 -4.767 1.00 10.00 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? 10.459 -0.369 -5.675 1.00 10.00 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? 11.353 0.477 -6.121 1.00 10.00 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? 12.522 0.097 -5.465 1.00 10.00 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? 13.839 0.631 -5.543 1.00 10.00 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? 14.252 1.581 -6.207 1.00 10.00 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? 14.735 -0.074 -4.716 1.00 10.00 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? 14.419 -1.152 -3.914 1.00 10.00 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? 15.417 -1.678 -3.198 1.00 10.00 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? 13.188 -1.647 -3.842 1.00 10.00 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? 12.300 -0.980 -4.634 1.00 10.00 ? 1 DG A C4 1 ATOM 20 P P . DG A 1 2 ? 7.489 -2.190 -0.443 1.00 10.00 ? 2 DG A P 1 ATOM 21 O OP1 . DG A 1 2 ? 6.974 -3.148 0.574 1.00 10.00 ? 2 DG A OP1 1 ATOM 22 O OP2 . DG A 1 2 ? 6.589 -1.115 -0.853 1.00 10.00 ? 2 DG A OP2 1 ATOM 23 O "O5'" . DG A 1 2 ? 8.927 -1.640 0.058 1.00 10.00 ? 2 DG A "O5'" 1 ATOM 24 C "C5'" . DG A 1 2 ? 9.729 -2.653 0.714 1.00 10.00 ? 2 DG A "C5'" 1 ATOM 25 C "C4'" . DG A 1 2 ? 10.836 -2.301 1.632 1.00 10.00 ? 2 DG A "C4'" 1 ATOM 26 O "O4'" . DG A 1 2 ? 12.022 -2.147 0.832 1.00 10.00 ? 2 DG A "O4'" 1 ATOM 27 C "C3'" . DG A 1 2 ? 10.741 -1.035 2.434 1.00 10.00 ? 2 DG A "C3'" 1 ATOM 28 O "O3'" . DG A 1 2 ? 10.783 -1.244 3.865 1.00 10.00 ? 2 DG A "O3'" 1 ATOM 29 C "C2'" . DG A 1 2 ? 11.965 -0.193 2.148 1.00 10.00 ? 2 DG A "C2'" 1 ATOM 30 C "C1'" . DG A 1 2 ? 12.657 -0.903 0.992 1.00 10.00 ? 2 DG A "C1'" 1 ATOM 31 N N9 . DG A 1 2 ? 12.503 0.023 -0.179 1.00 10.00 ? 2 DG A N9 1 ATOM 32 C C8 . DG A 1 2 ? 11.435 0.229 -1.025 1.00 10.00 ? 2 DG A C8 1 ATOM 33 N N7 . DG A 1 2 ? 11.655 1.136 -1.954 1.00 10.00 ? 2 DG A N7 1 ATOM 34 C C5 . DG A 1 2 ? 12.957 1.570 -1.698 1.00 10.00 ? 2 DG A C5 1 ATOM 35 C C6 . DG A 1 2 ? 13.754 2.545 -2.360 1.00 10.00 ? 2 DG A C6 1 ATOM 36 O O6 . DG A 1 2 ? 13.461 3.247 -3.328 1.00 10.00 ? 2 DG A O6 1 ATOM 37 N N1 . DG A 1 2 ? 15.020 2.660 -1.767 1.00 10.00 ? 2 DG A N1 1 ATOM 38 C C2 . DG A 1 2 ? 15.455 1.942 -0.679 1.00 10.00 ? 2 DG A C2 1 ATOM 39 N N2 . DG A 1 2 ? 16.682 2.135 -0.187 1.00 10.00 ? 2 DG A N2 1 ATOM 40 N N3 . DG A 1 2 ? 14.704 1.034 -0.064 1.00 10.00 ? 2 DG A N3 1 ATOM 41 C C4 . DG A 1 2 ? 13.466 0.904 -0.614 1.00 10.00 ? 2 DG A C4 1 ATOM 42 P P . DC A 1 3 ? 10.231 0.052 4.628 1.00 10.00 ? 3 DC A P 1 ATOM 43 O OP1 . DC A 1 3 ? 9.484 -0.324 5.841 1.00 10.00 ? 3 DC A OP1 1 ATOM 44 O OP2 . DC A 1 3 ? 9.440 0.780 3.610 1.00 10.00 ? 3 DC A OP2 1 ATOM 45 O "O5'" . DC A 1 3 ? 11.564 0.781 5.046 1.00 10.00 ? 3 DC A "O5'" 1 ATOM 46 C "C5'" . DC A 1 3 ? 12.832 0.103 5.105 1.00 10.00 ? 3 DC A "C5'" 1 ATOM 47 C "C4'" . DC A 1 3 ? 13.835 1.253 5.039 1.00 10.00 ? 3 DC A "C4'" 1 ATOM 48 O "O4'" . DC A 1 3 ? 14.145 1.551 3.670 1.00 10.00 ? 3 DC A "O4'" 1 ATOM 49 C "C3'" . DC A 1 3 ? 13.314 2.550 5.655 1.00 10.00 ? 3 DC A "C3'" 1 ATOM 50 O "O3'" . DC A 1 3 ? 14.099 2.891 6.798 1.00 10.00 ? 3 DC A "O3'" 1 ATOM 51 C "C2'" . DC A 1 3 ? 13.421 3.591 4.578 1.00 10.00 ? 3 DC A "C2'" 1 ATOM 52 C "C1'" . DC A 1 3 ? 14.215 2.902 3.412 1.00 10.00 ? 3 DC A "C1'" 1 ATOM 53 N N1 . DC A 1 3 ? 13.550 3.404 2.162 1.00 10.00 ? 3 DC A N1 1 ATOM 54 C C2 . DC A 1 3 ? 14.279 4.273 1.350 1.00 10.00 ? 3 DC A C2 1 ATOM 55 O O2 . DC A 1 3 ? 15.431 4.555 1.677 1.00 10.00 ? 3 DC A O2 1 ATOM 56 N N3 . DC A 1 3 ? 13.685 4.781 0.245 1.00 10.00 ? 3 DC A N3 1 ATOM 57 C C4 . DC A 1 3 ? 12.427 4.478 -0.070 1.00 10.00 ? 3 DC A C4 1 ATOM 58 N N4 . DC A 1 3 ? 11.917 5.008 -1.155 1.00 10.00 ? 3 DC A N4 1 ATOM 59 C C5 . DC A 1 3 ? 11.657 3.592 0.749 1.00 10.00 ? 3 DC A C5 1 ATOM 60 C C6 . DC A 1 3 ? 12.258 3.090 1.867 1.00 10.00 ? 3 DC A C6 1 ATOM 61 P P . DC A 1 4 ? 14.005 4.242 7.611 1.00 10.00 ? 4 DC A P 1 ATOM 62 O OP1 . DC A 1 4 ? 14.946 4.127 8.771 1.00 10.00 ? 4 DC A OP1 1 ATOM 63 O OP2 . DC A 1 4 ? 12.628 4.652 7.920 1.00 10.00 ? 4 DC A OP2 1 ATOM 64 O "O5'" . DC A 1 4 ? 14.693 5.295 6.586 1.00 10.00 ? 4 DC A "O5'" 1 ATOM 65 C "C5'" . DC A 1 4 ? 15.696 6.118 7.204 1.00 10.00 ? 4 DC A "C5'" 1 ATOM 66 C "C4'" . DC A 1 4 ? 16.276 7.264 6.438 1.00 10.00 ? 4 DC A "C4'" 1 ATOM 67 O "O4'" . DC A 1 4 ? 16.123 7.048 5.018 1.00 10.00 ? 4 DC A "O4'" 1 ATOM 68 C "C3'" . DC A 1 4 ? 15.670 8.634 6.635 1.00 10.00 ? 4 DC A "C3'" 1 ATOM 69 O "O3'" . DC A 1 4 ? 16.131 9.273 7.833 1.00 10.00 ? 4 DC A "O3'" 1 ATOM 70 C "C2'" . DC A 1 4 ? 16.106 9.380 5.386 1.00 10.00 ? 4 DC A "C2'" 1 ATOM 71 C "C1'" . DC A 1 4 ? 16.081 8.312 4.316 1.00 10.00 ? 4 DC A "C1'" 1 ATOM 72 N N1 . DC A 1 4 ? 14.827 8.179 3.542 1.00 10.00 ? 4 DC A N1 1 ATOM 73 C C2 . DC A 1 4 ? 14.535 9.053 2.509 1.00 10.00 ? 4 DC A C2 1 ATOM 74 O O2 . DC A 1 4 ? 15.364 9.921 2.259 1.00 10.00 ? 4 DC A O2 1 ATOM 75 N N3 . DC A 1 4 ? 13.359 8.891 1.852 1.00 10.00 ? 4 DC A N3 1 ATOM 76 C C4 . DC A 1 4 ? 12.497 7.922 2.167 1.00 10.00 ? 4 DC A C4 1 ATOM 77 N N4 . DC A 1 4 ? 11.364 7.780 1.503 1.00 10.00 ? 4 DC A N4 1 ATOM 78 C C5 . DC A 1 4 ? 12.777 7.006 3.235 1.00 10.00 ? 4 DC A C5 1 ATOM 79 C C6 . DC A 1 4 ? 13.953 7.187 3.893 1.00 10.00 ? 4 DC A C6 1 ATOM 80 P P . DG A 1 5 ? 14.846 9.746 8.667 1.00 10.00 ? 5 DG A P 1 ATOM 81 O OP1 . DG A 1 5 ? 15.236 10.067 10.041 1.00 10.00 ? 5 DG A OP1 1 ATOM 82 O OP2 . DG A 1 5 ? 13.770 8.733 8.569 1.00 10.00 ? 5 DG A OP2 1 ATOM 83 O "O5'" . DG A 1 5 ? 14.391 11.040 7.850 1.00 10.00 ? 5 DG A "O5'" 1 ATOM 84 C "C5'" . DG A 1 5 ? 15.381 11.961 7.379 1.00 10.00 ? 5 DG A "C5'" 1 ATOM 85 C "C4'" . DG A 1 5 ? 14.824 13.009 6.438 1.00 10.00 ? 5 DG A "C4'" 1 ATOM 86 O "O4'" . DG A 1 5 ? 14.360 12.292 5.238 1.00 10.00 ? 5 DG A "O4'" 1 ATOM 87 C "C3'" . DG A 1 5 ? 13.653 13.854 6.877 1.00 10.00 ? 5 DG A "C3'" 1 ATOM 88 O "O3'" . DG A 1 5 ? 13.856 15.286 7.014 1.00 10.00 ? 5 DG A "O3'" 1 ATOM 89 C "C2'" . DG A 1 5 ? 12.606 13.674 5.790 1.00 10.00 ? 5 DG A "C2'" 1 ATOM 90 C "C1'" . DG A 1 5 ? 13.390 13.081 4.598 1.00 10.00 ? 5 DG A "C1'" 1 ATOM 91 N N9 . DG A 1 5 ? 12.389 12.321 3.791 1.00 10.00 ? 5 DG A N9 1 ATOM 92 C C8 . DG A 1 5 ? 11.743 11.155 4.153 1.00 10.00 ? 5 DG A C8 1 ATOM 93 N N7 . DG A 1 5 ? 10.886 10.723 3.260 1.00 10.00 ? 5 DG A N7 1 ATOM 94 C C5 . DG A 1 5 ? 10.946 11.687 2.258 1.00 10.00 ? 5 DG A C5 1 ATOM 95 C C6 . DG A 1 5 ? 10.231 11.758 1.026 1.00 10.00 ? 5 DG A C6 1 ATOM 96 O O6 . DG A 1 5 ? 9.407 10.969 0.587 1.00 10.00 ? 5 DG A O6 1 ATOM 97 N N1 . DG A 1 5 ? 10.601 12.893 0.305 1.00 10.00 ? 5 DG A N1 1 ATOM 98 C C2 . DG A 1 5 ? 11.534 13.829 0.702 1.00 10.00 ? 5 DG A C2 1 ATOM 99 N N2 . DG A 1 5 ? 11.741 14.842 -0.142 1.00 10.00 ? 5 DG A N2 1 ATOM 100 N N3 . DG A 1 5 ? 12.207 13.759 1.842 1.00 10.00 ? 5 DG A N3 1 ATOM 101 C C4 . DG A 1 5 ? 11.855 12.668 2.572 1.00 10.00 ? 5 DG A C4 1 ATOM 102 P P . DG A 1 6 ? 12.525 16.118 7.376 1.00 10.00 ? 6 DG A P 1 ATOM 103 O OP1 . DG A 1 6 ? 12.912 17.214 8.302 1.00 10.00 ? 6 DG A OP1 1 ATOM 104 O OP2 . DG A 1 6 ? 11.462 15.198 7.821 1.00 10.00 ? 6 DG A OP2 1 ATOM 105 O "O5'" . DG A 1 6 ? 12.138 16.729 5.950 1.00 10.00 ? 6 DG A "O5'" 1 ATOM 106 C "C5'" . DG A 1 6 ? 13.094 17.526 5.263 1.00 10.00 ? 6 DG A "C5'" 1 ATOM 107 C "C4'" . DG A 1 6 ? 12.450 18.261 4.107 1.00 10.00 ? 6 DG A "C4'" 1 ATOM 108 O "O4'" . DG A 1 6 ? 12.308 17.376 2.957 1.00 10.00 ? 6 DG A "O4'" 1 ATOM 109 C "C3'" . DG A 1 6 ? 11.067 18.851 4.302 1.00 10.00 ? 6 DG A "C3'" 1 ATOM 110 O "O3'" . DG A 1 6 ? 11.173 20.133 4.890 1.00 10.00 ? 6 DG A "O3'" 1 ATOM 111 C "C2'" . DG A 1 6 ? 10.590 18.972 2.844 1.00 10.00 ? 6 DG A "C2'" 1 ATOM 112 C "C1'" . DG A 1 6 ? 11.101 17.690 2.266 1.00 10.00 ? 6 DG A "C1'" 1 ATOM 113 N N9 . DG A 1 6 ? 10.277 16.495 2.580 1.00 10.00 ? 6 DG A N9 1 ATOM 114 C C8 . DG A 1 6 ? 10.457 15.580 3.594 1.00 10.00 ? 6 DG A C8 1 ATOM 115 N N7 . DG A 1 6 ? 9.568 14.626 3.600 1.00 10.00 ? 6 DG A N7 1 ATOM 116 C C5 . DG A 1 6 ? 8.733 14.933 2.529 1.00 10.00 ? 6 DG A C5 1 ATOM 117 C C6 . DG A 1 6 ? 7.572 14.271 2.036 1.00 10.00 ? 6 DG A C6 1 ATOM 118 O O6 . DG A 1 6 ? 7.053 13.242 2.472 1.00 10.00 ? 6 DG A O6 1 ATOM 119 N N1 . DG A 1 6 ? 7.051 14.928 0.928 1.00 10.00 ? 6 DG A N1 1 ATOM 120 C C2 . DG A 1 6 ? 7.569 16.076 0.372 1.00 10.00 ? 6 DG A C2 1 ATOM 121 N N2 . DG A 1 6 ? 6.930 16.609 -0.682 1.00 10.00 ? 6 DG A N2 1 ATOM 122 N N3 . DG A 1 6 ? 8.641 16.705 0.829 1.00 10.00 ? 6 DG A N3 1 ATOM 123 C C4 . DG A 1 6 ? 9.172 16.067 1.898 1.00 10.00 ? 6 DG A C4 1 ATOM 124 P P . DC A 1 7 ? 9.892 20.811 5.540 1.00 10.00 ? 7 DC A P 1 ATOM 125 O OP1 . DC A 1 7 ? 10.219 22.211 5.844 1.00 10.00 ? 7 DC A OP1 1 ATOM 126 O OP2 . DC A 1 7 ? 9.497 19.936 6.667 1.00 10.00 ? 7 DC A OP2 1 ATOM 127 O "O5'" . DC A 1 7 ? 8.769 20.745 4.430 1.00 10.00 ? 7 DC A "O5'" 1 ATOM 128 C "C5'" . DC A 1 7 ? 8.631 21.857 3.533 1.00 10.00 ? 7 DC A "C5'" 1 ATOM 129 C "C4'" . DC A 1 7 ? 7.455 21.649 2.653 1.00 10.00 ? 7 DC A "C4'" 1 ATOM 130 O "O4'" . DC A 1 7 ? 7.443 20.332 2.058 1.00 10.00 ? 7 DC A "O4'" 1 ATOM 131 C "C3'" . DC A 1 7 ? 6.087 21.712 3.353 1.00 10.00 ? 7 DC A "C3'" 1 ATOM 132 O "O3'" . DC A 1 7 ? 5.807 23.028 3.743 1.00 10.00 ? 7 DC A "O3'" 1 ATOM 133 C "C2'" . DC A 1 7 ? 5.225 21.148 2.221 1.00 10.00 ? 7 DC A "C2'" 1 ATOM 134 C "C1'" . DC A 1 7 ? 6.076 19.981 1.805 1.00 10.00 ? 7 DC A "C1'" 1 ATOM 135 N N1 . DC A 1 7 ? 5.891 18.708 2.575 1.00 10.00 ? 7 DC A N1 1 ATOM 136 C C2 . DC A 1 7 ? 4.982 17.793 2.042 1.00 10.00 ? 7 DC A C2 1 ATOM 137 O O2 . DC A 1 7 ? 4.393 18.143 1.010 1.00 10.00 ? 7 DC A O2 1 ATOM 138 N N3 . DC A 1 7 ? 4.799 16.612 2.689 1.00 10.00 ? 7 DC A N3 1 ATOM 139 C C4 . DC A 1 7 ? 5.494 16.310 3.798 1.00 10.00 ? 7 DC A C4 1 ATOM 140 N N4 . DC A 1 7 ? 5.280 15.146 4.392 1.00 10.00 ? 7 DC A N4 1 ATOM 141 C C5 . DC A 1 7 ? 6.444 17.231 4.347 1.00 10.00 ? 7 DC A C5 1 ATOM 142 C C6 . DC A 1 7 ? 6.594 18.410 3.693 1.00 10.00 ? 7 DC A C6 1 ATOM 143 P P . DC A 1 8 ? 4.514 23.438 4.563 1.00 10.00 ? 8 DC A P 1 ATOM 144 O OP1 . DC A 1 8 ? 4.269 24.887 4.394 1.00 10.00 ? 8 DC A OP1 1 ATOM 145 O OP2 . DC A 1 8 ? 4.584 22.910 5.933 1.00 10.00 ? 8 DC A OP2 1 ATOM 146 O "O5'" . DC A 1 8 ? 3.336 22.688 3.770 1.00 10.00 ? 8 DC A "O5'" 1 ATOM 147 C "C5'" . DC A 1 8 ? 2.451 23.459 2.935 1.00 10.00 ? 8 DC A "C5'" 1 ATOM 148 C "C4'" . DC A 1 8 ? 1.216 22.677 2.556 1.00 10.00 ? 8 DC A "C4'" 1 ATOM 149 O "O4'" . DC A 1 8 ? 1.587 21.348 2.091 1.00 10.00 ? 8 DC A "O4'" 1 ATOM 150 C "C3'" . DC A 1 8 ? 0.207 22.428 3.679 1.00 10.00 ? 8 DC A "C3'" 1 ATOM 151 O "O3'" . DC A 1 8 ? -0.569 23.596 3.987 1.00 10.00 ? 8 DC A "O3'" 1 ATOM 152 C "C2'" . DC A 1 8 ? -0.549 21.204 3.108 1.00 10.00 ? 8 DC A "C2'" 1 ATOM 153 C "C1'" . DC A 1 8 ? 0.591 20.382 2.480 1.00 10.00 ? 8 DC A "C1'" 1 ATOM 154 N N1 . DC A 1 8 ? 1.248 19.382 3.378 1.00 10.00 ? 8 DC A N1 1 ATOM 155 C C2 . DC A 1 8 ? 0.727 18.085 3.444 1.00 10.00 ? 8 DC A C2 1 ATOM 156 O O2 . DC A 1 8 ? -0.263 17.796 2.747 1.00 10.00 ? 8 DC A O2 1 ATOM 157 N N3 . DC A 1 8 ? 1.330 17.188 4.265 1.00 10.00 ? 8 DC A N3 1 ATOM 158 C C4 . DC A 1 8 ? 2.383 17.522 5.018 1.00 10.00 ? 8 DC A C4 1 ATOM 159 N N4 . DC A 1 8 ? 2.923 16.614 5.817 1.00 10.00 ? 8 DC A N4 1 ATOM 160 C C5 . DC A 1 8 ? 2.923 18.846 4.974 1.00 10.00 ? 8 DC A C5 1 ATOM 161 C C6 . DC A 1 8 ? 2.320 19.727 4.134 1.00 10.00 ? 8 DC A C6 1 #