data_1VTV # _entry.id 1VTV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VTV pdb_00001vtv 10.2210/pdb1vtv/pdb NDB ZDFB03 ? ? RCSB RCSB003052 ? ? WWPDB D_1000003052 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-07-13 2 'Structure model' 1 1 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VTV _pdbx_database_status.recvd_initial_deposition_date 1989-01-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fujii, S.' 1 'Wang, A.H.-J.' 2 'Van Der Marel, G.A.' 3 'Van Boom, J.H.' 4 'Rich, A.' 5 # _citation.id primary _citation.title 'Molecular Structure of (m5dC-dG)3: The Role of the Methyl Group on 5-Methyl Cytosine in Stabilizing Z-DNA' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 10 _citation.page_first 7879 _citation.page_last 7892 _citation.year 1982 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 7155900 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fujii, S.' 1 ? primary 'Wang, A.H.-J.' 2 ? primary 'Van Der Marel, G.A.' 3 ? primary 'Van Boom, J.H.' 4 ? primary 'Rich, A.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA (5'-D(*(CH3)CP*GP*(CH3)CP*GP*(CH3)CP*G)-3') ; _entity.formula_weight 1852.286 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(5CM)(DG)(5CM)(DG)(5CM)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 5CM n 1 2 DG n 1 3 5CM n 1 4 DG n 1 5 5CM n 1 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 5CM 1 1 1 5CM 5CM A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 5CM 3 3 3 5CM 5CM A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 5CM 5 5 5 5CM 5CM A . n A 1 6 DG 6 6 6 DG DG A . n B 1 1 5CM 1 7 7 5CM 5CM B . n B 1 2 DG 2 8 8 DG DG B . n B 1 3 5CM 3 9 9 5CM 5CM B . n B 1 4 DG 4 10 10 DG DG B . n B 1 5 5CM 5 11 11 5CM 5CM B . n B 1 6 DG 6 12 12 DG DG B . n # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1VTV _cell.length_a 17.760 _cell.length_b 30.570 _cell.length_c 45.420 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1VTV _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1VTV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 26.09 _exptl_crystal.density_Matthews 1.66 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details 'ROOM TEMPERATURE' _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER 1 2 3 1 2 1 MPD 4 5 6 1 3 1 'NA CACODYLATE' 7 8 9 1 4 1 SPERMINE_HCL 10 11 12 1 5 1 MGCL2 13 14 15 1 6 2 WATER 16 17 18 1 7 2 MPD 19 20 21 # _diffrn.id 1 _diffrn.ambient_temp 265.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'NICOLET P3' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _reflns.entry_id 1VTV _reflns.observed_criterion_sigma_I 1.500 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 1.300 _reflns.number_obs 4208 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _refine.entry_id 1VTV _refine.ls_number_reflns_obs 4208 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I 1.500 _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 1.300 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1560000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 246 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 246 _refine_hist.d_res_high 1.300 _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 1VTV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1VTV _struct.title 'Molecular structure of (M5DC-DG)3: The role of the methyl group on 5-methyl cytosine in stabilizing Z-DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VTV _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Z-DNA, DOUBLE HELIX, MODIFIED, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 1VTV _struct_ref.pdbx_db_accession 1VTV _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code CGCGCG _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1VTV A 1 ? 6 ? 1VTV 1 ? 6 ? 1 6 2 1 1VTV B 1 ? 6 ? 1VTV 7 ? 12 ? 7 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A 5CM 1 "O3'" ? ? ? 1_555 A DG 2 P ? ? A 5CM 1 A DG 2 1_555 ? ? ? ? ? ? ? 1.578 ? ? covale2 covale both ? A DG 2 "O3'" ? ? ? 1_555 A 5CM 3 P A ? A DG 2 A 5CM 3 1_555 ? ? ? ? ? ? ? 1.577 ? ? covale3 covale both ? A DG 2 "O3'" ? ? ? 1_555 A 5CM 3 P B ? A DG 2 A 5CM 3 1_555 ? ? ? ? ? ? ? 1.529 ? ? covale4 covale both ? A 5CM 3 "O3'" ? ? ? 1_555 A DG 4 P ? ? A 5CM 3 A DG 4 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale5 covale both ? A DG 4 "O3'" ? ? ? 1_555 A 5CM 5 P A ? A DG 4 A 5CM 5 1_555 ? ? ? ? ? ? ? 1.574 ? ? covale6 covale both ? A DG 4 "O3'" ? ? ? 1_555 A 5CM 5 P B ? A DG 4 A 5CM 5 1_555 ? ? ? ? ? ? ? 1.584 ? ? covale7 covale both ? A 5CM 5 "O3'" ? ? ? 1_555 A DG 6 P ? ? A 5CM 5 A DG 6 1_555 ? ? ? ? ? ? ? 1.579 ? ? covale8 covale both ? B 5CM 1 "O3'" ? ? ? 1_555 B DG 2 P ? ? B 5CM 7 B DG 8 1_555 ? ? ? ? ? ? ? 1.595 ? ? covale9 covale both ? B DG 2 "O3'" ? ? ? 1_555 B 5CM 3 P ? ? B DG 8 B 5CM 9 1_555 ? ? ? ? ? ? ? 1.578 ? ? covale10 covale both ? B 5CM 3 "O3'" ? ? ? 1_555 B DG 4 P ? ? B 5CM 9 B DG 10 1_555 ? ? ? ? ? ? ? 1.575 ? ? covale11 covale both ? B DG 4 "O3'" ? ? ? 1_555 B 5CM 5 P ? ? B DG 10 B 5CM 11 1_555 ? ? ? ? ? ? ? 1.596 ? ? covale12 covale both ? B 5CM 5 "O3'" ? ? ? 1_555 B DG 6 P ? ? B 5CM 11 B DG 12 1_555 ? ? ? ? ? ? ? 1.591 ? ? hydrog1 hydrog ? ? A 5CM 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A 5CM 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A 5CM 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A 5CM 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A 5CM 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A 5CM 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B 5CM 5 N3 ? ? A DG 2 B 5CM 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B 5CM 5 O2 ? ? A DG 2 B 5CM 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B 5CM 5 N4 ? ? A DG 2 B 5CM 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A 5CM 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A 5CM 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A 5CM 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A 5CM 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A 5CM 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A 5CM 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B 5CM 3 N3 ? ? A DG 4 B 5CM 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B 5CM 3 O2 ? ? A DG 4 B 5CM 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B 5CM 3 N4 ? ? A DG 4 B 5CM 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A 5CM 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A 5CM 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A 5CM 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A 5CM 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A 5CM 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A 5CM 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B 5CM 1 N3 ? ? A DG 6 B 5CM 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B 5CM 1 O2 ? ? A DG 6 B 5CM 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B 5CM 1 N4 ? ? A DG 6 B 5CM 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C6 A DG 2 ? ? N1 A DG 2 ? ? 1.346 1.391 -0.045 0.007 N 2 1 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.239 1.341 -0.102 0.010 N 3 1 "O3'" A DG 2 ? ? P A 5CM 3 ? B 1.529 1.607 -0.078 0.012 Y 4 1 C6 A DG 4 ? ? N1 A DG 4 ? ? 1.341 1.391 -0.050 0.007 N 5 1 C8 A DG 4 ? ? N9 A DG 4 ? ? 1.317 1.374 -0.057 0.007 N 6 1 C2 A DG 4 ? ? N2 A DG 4 ? ? 1.250 1.341 -0.091 0.010 N 7 1 "C3'" A DG 6 ? ? "C2'" A DG 6 ? ? 1.467 1.516 -0.049 0.008 N 8 1 C2 A DG 6 ? ? N2 A DG 6 ? ? 1.255 1.341 -0.086 0.010 N 9 1 C6 B DG 8 ? ? N1 B DG 8 ? ? 1.332 1.391 -0.059 0.007 N 10 1 C2 B DG 8 ? ? N2 B DG 8 ? ? 1.249 1.341 -0.092 0.010 N 11 1 N3 B DG 10 ? ? C4 B DG 10 ? ? 1.694 1.350 0.344 0.007 N 12 1 C4 B DG 10 ? ? C5 B DG 10 ? ? 1.306 1.379 -0.073 0.007 N 13 1 C6 B DG 10 ? ? N1 B DG 10 ? ? 1.342 1.391 -0.049 0.007 N 14 1 C5 B DG 10 ? ? N7 B DG 10 ? ? 1.329 1.388 -0.059 0.006 N 15 1 C8 B DG 10 ? ? N9 B DG 10 ? ? 1.328 1.374 -0.046 0.007 N 16 1 N9 B DG 10 ? ? C4 B DG 10 ? ? 1.095 1.375 -0.280 0.008 N 17 1 C2 B DG 10 ? ? N2 B DG 10 ? ? 1.236 1.341 -0.105 0.010 N 18 1 N1 B DG 12 ? ? C2 B DG 12 ? ? 1.232 1.373 -0.141 0.008 N 19 1 C6 B DG 12 ? ? N1 B DG 12 ? ? 1.459 1.391 0.068 0.007 N 20 1 C8 B DG 12 ? ? N9 B DG 12 ? ? 1.327 1.374 -0.047 0.007 N 21 1 C2 B DG 12 ? ? N2 B DG 12 ? ? 1.241 1.341 -0.100 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 OP1 A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 128.90 119.60 9.30 1.50 N 2 1 "O5'" A DG 2 ? ? "C5'" A DG 2 ? ? "C4'" A DG 2 ? ? 103.59 109.40 -5.81 0.80 N 3 1 C6 A DG 2 ? ? N1 A DG 2 ? ? C2 A DG 2 ? ? 118.97 125.10 -6.13 0.60 N 4 1 N1 A DG 2 ? ? C2 A DG 2 ? ? N3 A DG 2 ? ? 127.80 123.90 3.90 0.60 N 5 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 118.07 111.50 6.57 0.50 N 6 1 C4 A DG 2 ? ? C5 A DG 2 ? ? N7 A DG 2 ? ? 113.93 110.80 3.13 0.40 N 7 1 C5 A DG 2 ? ? N7 A DG 2 ? ? C8 A DG 2 ? ? 100.90 104.30 -3.40 0.50 N 8 1 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 113.90 119.90 -6.00 0.70 N 9 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 122.77 128.60 -5.83 0.60 N 10 1 OP1 A DG 4 ? ? P A DG 4 ? ? OP2 A DG 4 ? ? 132.79 119.60 13.19 1.50 N 11 1 "O5'" A DG 4 ? ? "C5'" A DG 4 ? ? "C4'" A DG 4 ? ? 104.32 109.40 -5.08 0.80 N 12 1 C6 A DG 4 ? ? N1 A DG 4 ? ? C2 A DG 4 ? ? 120.06 125.10 -5.04 0.60 N 13 1 N1 A DG 4 ? ? C2 A DG 4 ? ? N3 A DG 4 ? ? 127.82 123.90 3.92 0.60 N 14 1 C5 A DG 4 ? ? C6 A DG 4 ? ? N1 A DG 4 ? ? 117.45 111.50 5.95 0.50 N 15 1 N3 A DG 4 ? ? C2 A DG 4 ? ? N2 A DG 4 ? ? 112.08 119.90 -7.82 0.70 N 16 1 C5 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 124.72 128.60 -3.88 0.60 N 17 1 C6 A DG 6 ? ? N1 A DG 6 ? ? C2 A DG 6 ? ? 119.27 125.10 -5.83 0.60 N 18 1 N1 A DG 6 ? ? C2 A DG 6 ? ? N3 A DG 6 ? ? 129.41 123.90 5.51 0.60 N 19 1 C5 A DG 6 ? ? C6 A DG 6 ? ? N1 A DG 6 ? ? 116.73 111.50 5.23 0.50 N 20 1 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 111.61 119.90 -8.29 0.70 N 21 1 "O5'" B DG 8 ? ? "C5'" B DG 8 ? ? "C4'" B DG 8 ? ? 101.20 109.40 -8.20 0.80 N 22 1 P B DG 8 ? ? "O5'" B DG 8 ? ? "C5'" B DG 8 ? ? 109.93 120.90 -10.97 1.60 N 23 1 C5 B DG 8 ? ? C6 B DG 8 ? ? N1 B DG 8 ? ? 116.55 111.50 5.05 0.50 N 24 1 N3 B DG 8 ? ? C2 B DG 8 ? ? N2 B DG 8 ? ? 113.70 119.90 -6.20 0.70 N 25 1 C5 B DG 8 ? ? C6 B DG 8 ? ? O6 B DG 8 ? ? 123.74 128.60 -4.86 0.60 N 26 1 C6 B DG 10 ? ? N1 B DG 10 ? ? C2 B DG 10 ? ? 120.49 125.10 -4.61 0.60 N 27 1 N1 B DG 10 ? ? C2 B DG 10 ? ? N3 B DG 10 ? ? 127.68 123.90 3.78 0.60 N 28 1 N3 B DG 10 ? ? C4 B DG 10 ? ? C5 B DG 10 ? ? 108.28 128.60 -20.32 0.50 N 29 1 C4 B DG 10 ? ? C5 B DG 10 ? ? C6 B DG 10 ? ? 131.82 118.80 13.02 0.60 N 30 1 C5 B DG 10 ? ? C6 B DG 10 ? ? N1 B DG 10 ? ? 116.93 111.50 5.43 0.50 N 31 1 C4 B DG 10 ? ? C5 B DG 10 ? ? N7 B DG 10 ? ? 97.68 110.80 -13.12 0.40 N 32 1 C8 B DG 10 ? ? N9 B DG 10 ? ? C4 B DG 10 ? ? 95.77 106.40 -10.63 0.40 N 33 1 N9 B DG 10 ? ? C4 B DG 10 ? ? C5 B DG 10 ? ? 129.40 105.40 24.00 0.40 N 34 1 N3 B DG 10 ? ? C4 B DG 10 ? ? N9 B DG 10 ? ? 122.31 126.00 -3.69 0.60 N 35 1 N3 B DG 10 ? ? C2 B DG 10 ? ? N2 B DG 10 ? ? 111.48 119.90 -8.42 0.70 N 36 1 C4 B DG 10 ? ? N9 B DG 10 ? ? "C1'" B DG 10 ? ? 138.02 126.50 11.52 1.30 N 37 1 P B DG 12 ? ? "O5'" B DG 12 ? ? "C5'" B DG 12 ? ? 110.96 120.90 -9.94 1.60 N 38 1 C6 B DG 12 ? ? N1 B DG 12 ? ? C2 B DG 12 ? ? 119.59 125.10 -5.51 0.60 N 39 1 N1 B DG 12 ? ? C2 B DG 12 ? ? N3 B DG 12 ? ? 131.39 123.90 7.49 0.60 N 40 1 N3 B DG 12 ? ? C2 B DG 12 ? ? N2 B DG 12 ? ? 112.51 119.90 -7.39 0.70 N 41 1 C5 B DG 12 ? ? C6 B DG 12 ? ? O6 B DG 12 ? ? 123.27 128.60 -5.33 0.60 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 5CM 1 A 5CM 1 ? DC ? 2 A 5CM 3 A 5CM 3 ? DC ? 3 A 5CM 5 A 5CM 5 ? DC ? 4 B 5CM 1 B 5CM 7 ? DC ? 5 B 5CM 3 B 5CM 9 ? DC ? 6 B 5CM 5 B 5CM 11 ? DC ? # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5CM N1 N N N 1 5CM C2 C N N 2 5CM N3 N N N 3 5CM C4 C N N 4 5CM C5 C N N 5 5CM C5A C N N 6 5CM C6 C N N 7 5CM O2 O N N 8 5CM N4 N N N 9 5CM "C1'" C N R 10 5CM "C2'" C N N 11 5CM "C3'" C N S 12 5CM "C4'" C N R 13 5CM "O4'" O N N 14 5CM "O3'" O N N 15 5CM "C5'" C N N 16 5CM "O5'" O N N 17 5CM P P N N 18 5CM OP1 O N N 19 5CM OP2 O N N 20 5CM OP3 O N N 21 5CM H5A1 H N N 22 5CM H5A2 H N N 23 5CM H5A3 H N N 24 5CM H6 H N N 25 5CM HN41 H N N 26 5CM HN42 H N N 27 5CM "H1'" H N N 28 5CM "H2'" H N N 29 5CM "H2''" H N N 30 5CM "H3'" H N N 31 5CM "H4'" H N N 32 5CM "HO3'" H N N 33 5CM "H5'" H N N 34 5CM "H5''" H N N 35 5CM HOP2 H N N 36 5CM HOP3 H N N 37 DG OP3 O N N 38 DG P P N N 39 DG OP1 O N N 40 DG OP2 O N N 41 DG "O5'" O N N 42 DG "C5'" C N N 43 DG "C4'" C N R 44 DG "O4'" O N N 45 DG "C3'" C N S 46 DG "O3'" O N N 47 DG "C2'" C N N 48 DG "C1'" C N R 49 DG N9 N Y N 50 DG C8 C Y N 51 DG N7 N Y N 52 DG C5 C Y N 53 DG C6 C N N 54 DG O6 O N N 55 DG N1 N N N 56 DG C2 C N N 57 DG N2 N N N 58 DG N3 N N N 59 DG C4 C Y N 60 DG HOP3 H N N 61 DG HOP2 H N N 62 DG "H5'" H N N 63 DG "H5''" H N N 64 DG "H4'" H N N 65 DG "H3'" H N N 66 DG "HO3'" H N N 67 DG "H2'" H N N 68 DG "H2''" H N N 69 DG "H1'" H N N 70 DG H8 H N N 71 DG H1 H N N 72 DG H21 H N N 73 DG H22 H N N 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5CM N1 C2 sing N N 1 5CM N1 C6 sing N N 2 5CM N1 "C1'" sing N N 3 5CM C2 N3 sing N N 4 5CM C2 O2 doub N N 5 5CM N3 C4 doub N N 6 5CM C4 C5 sing N N 7 5CM C4 N4 sing N N 8 5CM C5 C5A sing N N 9 5CM C5 C6 doub N N 10 5CM C5A H5A1 sing N N 11 5CM C5A H5A2 sing N N 12 5CM C5A H5A3 sing N N 13 5CM C6 H6 sing N N 14 5CM N4 HN41 sing N N 15 5CM N4 HN42 sing N N 16 5CM "C1'" "C2'" sing N N 17 5CM "C1'" "O4'" sing N N 18 5CM "C1'" "H1'" sing N N 19 5CM "C2'" "C3'" sing N N 20 5CM "C2'" "H2'" sing N N 21 5CM "C2'" "H2''" sing N N 22 5CM "C3'" "C4'" sing N N 23 5CM "C3'" "O3'" sing N N 24 5CM "C3'" "H3'" sing N N 25 5CM "C4'" "O4'" sing N N 26 5CM "C4'" "C5'" sing N N 27 5CM "C4'" "H4'" sing N N 28 5CM "O3'" "HO3'" sing N N 29 5CM "C5'" "O5'" sing N N 30 5CM "C5'" "H5'" sing N N 31 5CM "C5'" "H5''" sing N N 32 5CM "O5'" P sing N N 33 5CM P OP1 doub N N 34 5CM P OP2 sing N N 35 5CM P OP3 sing N N 36 5CM OP2 HOP2 sing N N 37 5CM OP3 HOP3 sing N N 38 DG OP3 P sing N N 39 DG OP3 HOP3 sing N N 40 DG P OP1 doub N N 41 DG P OP2 sing N N 42 DG P "O5'" sing N N 43 DG OP2 HOP2 sing N N 44 DG "O5'" "C5'" sing N N 45 DG "C5'" "C4'" sing N N 46 DG "C5'" "H5'" sing N N 47 DG "C5'" "H5''" sing N N 48 DG "C4'" "O4'" sing N N 49 DG "C4'" "C3'" sing N N 50 DG "C4'" "H4'" sing N N 51 DG "O4'" "C1'" sing N N 52 DG "C3'" "O3'" sing N N 53 DG "C3'" "C2'" sing N N 54 DG "C3'" "H3'" sing N N 55 DG "O3'" "HO3'" sing N N 56 DG "C2'" "C1'" sing N N 57 DG "C2'" "H2'" sing N N 58 DG "C2'" "H2''" sing N N 59 DG "C1'" N9 sing N N 60 DG "C1'" "H1'" sing N N 61 DG N9 C8 sing Y N 62 DG N9 C4 sing Y N 63 DG C8 N7 doub Y N 64 DG C8 H8 sing N N 65 DG N7 C5 sing Y N 66 DG C5 C6 sing N N 67 DG C5 C4 doub Y N 68 DG C6 O6 doub N N 69 DG C6 N1 sing N N 70 DG N1 C2 sing N N 71 DG N1 H1 sing N N 72 DG C2 N2 sing N N 73 DG C2 N3 doub N N 74 DG N2 H21 sing N N 75 DG N2 H22 sing N N 76 DG N3 C4 sing N N 77 # _ndb_struct_conf_na.entry_id 1VTV _ndb_struct_conf_na.feature 'z-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A 5CM 1 1_555 B DG 6 1_555 -0.316 -0.162 0.033 8.724 -0.676 1.506 1 A_5CM1:DG12_B A 1 ? B 12 ? 19 1 1 A DG 2 1_555 B 5CM 5 1_555 0.308 -0.163 0.289 -7.871 -0.003 1.457 2 A_DG2:5CM11_B A 2 ? B 11 ? 19 1 1 A 5CM 3 1_555 B DG 4 1_555 -0.269 -0.136 -0.067 3.456 -6.266 -0.566 3 A_5CM3:DG10_B A 3 ? B 10 ? 19 1 1 A DG 4 1_555 B 5CM 3 1_555 0.142 -0.118 -0.080 -7.173 -0.247 2.062 4 A_DG4:5CM9_B A 4 ? B 9 ? 19 1 1 A 5CM 5 1_555 B DG 2 1_555 -0.238 -0.141 -0.010 7.506 -2.561 1.267 5 A_5CM5:DG8_B A 5 ? B 8 ? 19 1 1 A DG 6 1_555 B 5CM 1 1_555 0.283 -0.166 0.086 -5.409 0.243 1.192 6 A_DG6:5CM7_B A 6 ? B 7 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A 5CM 1 1_555 B DG 6 1_555 A DG 2 1_555 B 5CM 5 1_555 -0.147 5.710 4.081 -0.491 -0.042 -10.947 -29.819 -1.725 4.092 0.221 -2.574 -10.958 1 AA_5CM1DG2:5CM11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DG 2 1_555 B 5CM 5 1_555 A 5CM 3 1_555 B DG 4 1_555 -0.134 -1.063 3.348 3.093 -3.941 -46.664 1.665 0.090 3.255 4.958 3.891 -46.917 2 AA_DG25CM3:DG105CM11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A 5CM 3 1_555 B DG 4 1_555 A DG 4 1_555 B 5CM 3 1_555 -0.099 5.521 3.688 -0.178 -5.382 -12.098 -15.418 -0.710 5.607 24.038 -0.795 -13.238 3 AA_5CM3DG4:5CM9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DG 4 1_555 B 5CM 3 1_555 A 5CM 5 1_555 B DG 2 1_555 -0.206 -1.015 3.250 -0.060 -3.893 -46.200 1.613 -0.267 3.158 4.951 -0.077 -46.355 4 AA_DG45CM5:DG85CM9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A 5CM 5 1_555 B DG 2 1_555 A DG 6 1_555 B 5CM 1 1_555 0.140 5.682 3.875 -0.483 -1.220 -13.413 -22.626 -0.033 4.373 5.205 -2.060 -13.477 5 AA_5CM5DG6:5CM7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ? # _atom_sites.entry_id 1VTV _atom_sites.fract_transf_matrix[1][1] 0.056306 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.032712 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022017 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # _atom_sites_footnote.id 1 _atom_sites_footnote.text 'THESE PHOSPHATES ARE DISORDERED.' # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 . 5CM A 1 1 ? 11.301 12.995 -3.248 1.00 10.00 ? 1 5CM A N1 1 HETATM 2 C C2 . 5CM A 1 1 ? 12.631 13.157 -3.475 1.00 10.00 ? 1 5CM A C2 1 HETATM 3 N N3 . 5CM A 1 1 ? 13.356 11.986 -3.597 1.00 10.00 ? 1 5CM A N3 1 HETATM 4 C C4 . 5CM A 1 1 ? 12.803 10.721 -3.484 1.00 10.00 ? 1 5CM A C4 1 HETATM 5 C C5 . 5CM A 1 1 ? 11.425 10.626 -3.225 1.00 10.00 ? 1 5CM A C5 1 HETATM 6 C C5A . 5CM A 1 1 ? 10.771 9.260 -3.089 1.00 10.00 ? 1 5CM A C5A 1 HETATM 7 C C6 . 5CM A 1 1 ? 10.718 11.745 -3.116 1.00 10.00 ? 1 5CM A C6 1 HETATM 8 O O2 . 5CM A 1 1 ? 13.199 14.215 -3.602 1.00 10.00 ? 1 5CM A O2 1 HETATM 9 N N4 . 5CM A 1 1 ? 13.652 9.651 -3.643 1.00 10.00 ? 1 5CM A N4 1 HETATM 10 C "C1'" . 5CM A 1 1 ? 10.496 14.282 -3.102 1.00 10.00 ? 1 5CM A "C1'" 1 HETATM 11 C "C2'" . 5CM A 1 1 ? 9.908 14.701 -4.501 1.00 10.00 ? 1 5CM A "C2'" 1 HETATM 12 C "C3'" . 5CM A 1 1 ? 8.692 15.508 -4.020 1.00 10.00 ? 1 5CM A "C3'" 1 HETATM 13 C "C4'" . 5CM A 1 1 ? 8.276 14.833 -2.684 1.00 10.00 ? 1 5CM A "C4'" 1 HETATM 14 O "O4'" . 5CM A 1 1 ? 9.383 14.047 -2.262 1.00 10.00 ? 1 5CM A "O4'" 1 HETATM 15 O "O3'" . 5CM A 1 1 ? 9.187 16.777 -3.724 1.00 10.00 ? 1 5CM A "O3'" 1 HETATM 16 C "C5'" . 5CM A 1 1 ? 7.083 13.882 -2.748 1.00 10.00 ? 1 5CM A "C5'" 1 HETATM 17 O "O5'" . 5CM A 1 1 ? 7.378 12.937 -3.824 1.00 10.00 ? 1 5CM A "O5'" 1 ATOM 18 P P . DG A 1 2 ? 8.388 18.122 -3.929 1.00 10.00 ? 2 DG A P 1 ATOM 19 O OP1 . DG A 1 2 ? 7.559 17.893 -5.110 1.00 10.00 ? 2 DG A OP1 1 ATOM 20 O OP2 . DG A 1 2 ? 9.328 19.122 -3.702 1.00 10.00 ? 2 DG A OP2 1 ATOM 21 O "O5'" . DG A 1 2 ? 7.365 18.272 -2.657 1.00 10.00 ? 2 DG A "O5'" 1 ATOM 22 C "C5'" . DG A 1 2 ? 7.905 18.263 -1.367 1.00 10.00 ? 2 DG A "C5'" 1 ATOM 23 C "C4'" . DG A 1 2 ? 6.672 18.070 -0.459 1.00 10.00 ? 2 DG A "C4'" 1 ATOM 24 O "O4'" . DG A 1 2 ? 6.109 16.786 -0.613 1.00 10.00 ? 2 DG A "O4'" 1 ATOM 25 C "C3'" . DG A 1 2 ? 7.093 18.165 1.031 1.00 10.00 ? 2 DG A "C3'" 1 ATOM 26 O "O3'" . DG A 1 2 ? 6.992 19.571 1.285 1.00 10.00 ? 2 DG A "O3'" 1 ATOM 27 C "C2'" . DG A 1 2 ? 6.166 17.232 1.731 1.00 10.00 ? 2 DG A "C2'" 1 ATOM 28 C "C1'" . DG A 1 2 ? 5.738 16.205 0.663 1.00 10.00 ? 2 DG A "C1'" 1 ATOM 29 N N9 . DG A 1 2 ? 6.353 14.949 0.722 1.00 10.00 ? 2 DG A N9 1 ATOM 30 C C8 . DG A 1 2 ? 5.689 13.790 0.763 1.00 10.00 ? 2 DG A C8 1 ATOM 31 N N7 . DG A 1 2 ? 6.454 12.702 0.831 1.00 10.00 ? 2 DG A N7 1 ATOM 32 C C5 . DG A 1 2 ? 7.706 13.261 0.772 1.00 10.00 ? 2 DG A C5 1 ATOM 33 C C6 . DG A 1 2 ? 8.988 12.638 0.736 1.00 10.00 ? 2 DG A C6 1 ATOM 34 O O6 . DG A 1 2 ? 9.141 11.372 0.754 1.00 10.00 ? 2 DG A O6 1 ATOM 35 N N1 . DG A 1 2 ? 10.075 13.429 0.677 1.00 10.00 ? 2 DG A N1 1 ATOM 36 C C2 . DG A 1 2 ? 9.908 14.765 0.627 1.00 10.00 ? 2 DG A C2 1 ATOM 37 N N2 . DG A 1 2 ? 10.917 15.481 0.559 1.00 10.00 ? 2 DG A N2 1 ATOM 38 N N3 . DG A 1 2 ? 8.761 15.447 0.640 1.00 10.00 ? 2 DG A N3 1 ATOM 39 C C4 . DG A 1 2 ? 7.701 14.625 0.699 1.00 10.00 ? 2 DG A C4 1 HETATM 40 N N1 . 5CM A 1 3 ? 10.382 16.110 4.388 1.00 10.00 ? 3 5CM A N1 1 HETATM 41 C C2 . 5CM A 1 3 ? 11.199 15.034 4.197 1.00 10.00 ? 3 5CM A C2 1 HETATM 42 N N3 . 5CM A 1 3 ? 10.596 13.821 4.097 1.00 10.00 ? 3 5CM A N3 1 HETATM 43 C C4 . 5CM A 1 3 ? 9.228 13.646 4.165 1.00 10.00 ? 3 5CM A C4 1 HETATM 44 C C5 . 5CM A 1 3 ? 8.404 14.793 4.347 1.00 10.00 ? 3 5CM A C5 1 HETATM 45 C C5A . 5CM A 1 3 ? 6.900 14.695 4.460 1.00 10.00 ? 3 5CM A C5A 1 HETATM 46 C C6 . 5CM A 1 3 ? 9.010 15.973 4.433 1.00 10.00 ? 3 5CM A C6 1 HETATM 47 O O2 . 5CM A 1 3 ? 12.395 15.120 4.120 1.00 10.00 ? 3 5CM A O2 1 HETATM 48 N N4 . 5CM A 1 3 ? 8.727 12.378 4.056 1.00 10.00 ? 3 5CM A N4 1 HETATM 49 C "C1'" . 5CM A 1 3 ? 11.034 17.446 4.456 1.00 10.00 ? 3 5CM A "C1'" 1 HETATM 50 C "C2'" . 5CM A 1 3 ? 11.141 18.061 2.975 1.00 10.00 ? 3 5CM A "C2'" 1 HETATM 51 C "C3'" . 5CM A 1 3 ? 11.352 19.525 3.407 1.00 10.00 ? 3 5CM A "C3'" 1 HETATM 52 C "C4'" . 5CM A 1 3 ? 10.406 19.721 4.624 1.00 10.00 ? 3 5CM A "C4'" 1 HETATM 53 O "O4'" . 5CM A 1 3 ? 10.157 18.333 5.078 1.00 10.00 ? 3 5CM A "O4'" 1 HETATM 54 O "O3'" . 5CM A 1 3 ? 12.659 19.770 3.815 1.00 10.00 ? 3 5CM A "O3'" 1 HETATM 55 C "C5'" . 5CM A 1 3 ? 9.065 20.341 4.351 1.00 10.00 ? 3 5CM A "C5'" 1 HETATM 56 O "O5'" . 5CM A 1 3 ? 8.537 19.681 3.270 1.00 10.00 ? 3 5CM A "O5'" 1 HETATM 57 P P A 5CM A 1 3 ? 8.218 20.405 1.821 0.50 10.00 ? 3 5CM A P 1 HETATM 58 P P B 5CM A 1 3 ? 7.127 20.161 2.689 0.50 10.00 ? 3 5CM A P 1 HETATM 59 O OP1 A 5CM A 1 3 ? 7.774 21.680 2.185 0.50 10.00 ? 3 5CM A OP1 1 HETATM 60 O OP1 B 5CM A 1 3 ? 6.816 21.604 2.589 0.50 10.00 ? 3 5CM A OP1 1 HETATM 61 O OP2 A 5CM A 1 3 ? 9.363 20.329 0.931 0.50 10.00 ? 3 5CM A OP2 1 HETATM 62 O OP2 B 5CM A 1 3 ? 6.264 19.326 3.538 0.50 10.00 ? 3 5CM A OP2 1 ATOM 63 P P . DG A 1 4 ? 13.306 21.234 3.629 1.00 10.00 ? 4 DG A P 1 ATOM 64 O OP1 . DG A 1 4 ? 12.729 21.864 2.480 1.00 10.00 ? 4 DG A OP1 1 ATOM 65 O OP2 . DG A 1 4 ? 14.611 20.898 3.965 1.00 10.00 ? 4 DG A OP2 1 ATOM 66 O "O5'" . DG A 1 4 ? 12.784 22.072 4.951 1.00 10.00 ? 4 DG A "O5'" 1 ATOM 67 C "C5'" . DG A 1 4 ? 13.134 21.659 6.223 1.00 10.00 ? 4 DG A "C5'" 1 ATOM 68 C "C4'" . DG A 1 4 ? 12.295 22.545 7.154 1.00 10.00 ? 4 DG A "C4'" 1 ATOM 69 O "O4'" . DG A 1 4 ? 10.933 22.353 6.899 1.00 10.00 ? 4 DG A "O4'" 1 ATOM 70 C "C3'" . DG A 1 4 ? 12.494 22.237 8.671 1.00 10.00 ? 4 DG A "C3'" 1 ATOM 71 O "O3'" . DG A 1 4 ? 13.528 23.086 9.061 1.00 10.00 ? 4 DG A "O3'" 1 ATOM 72 C "C2'" . DG A 1 4 ? 11.162 22.417 9.325 1.00 10.00 ? 4 DG A "C2'" 1 ATOM 73 C "C1'" . DG A 1 4 ? 10.164 22.328 8.144 1.00 10.00 ? 4 DG A "C1'" 1 ATOM 74 N N9 . DG A 1 4 ? 9.374 21.154 8.135 1.00 10.00 ? 4 DG A N9 1 ATOM 75 C C8 . DG A 1 4 ? 8.058 21.121 8.107 1.00 10.00 ? 4 DG A C8 1 ATOM 76 N N7 . DG A 1 4 ? 7.521 19.910 8.039 1.00 10.00 ? 4 DG A N7 1 ATOM 77 C C5 . DG A 1 4 ? 8.628 19.109 8.053 1.00 10.00 ? 4 DG A C5 1 ATOM 78 C C6 . DG A 1 4 ? 8.754 17.688 8.003 1.00 10.00 ? 4 DG A C6 1 ATOM 79 O O6 . DG A 1 4 ? 7.798 16.893 7.953 1.00 10.00 ? 4 DG A O6 1 ATOM 80 N N1 . DG A 1 4 ? 9.994 17.177 8.003 1.00 10.00 ? 4 DG A N1 1 ATOM 81 C C2 . DG A 1 4 ? 11.057 17.994 8.017 1.00 10.00 ? 4 DG A C2 1 ATOM 82 N N2 . DG A 1 4 ? 12.212 17.517 8.030 1.00 10.00 ? 4 DG A N2 1 ATOM 83 N N3 . DG A 1 4 ? 11.064 19.348 8.085 1.00 10.00 ? 4 DG A N3 1 ATOM 84 C C4 . DG A 1 4 ? 9.795 19.825 8.098 1.00 10.00 ? 4 DG A C4 1 HETATM 85 N N1 . 5CM A 1 5 ? 12.214 18.397 11.932 1.00 10.00 ? 5 5CM A N1 1 HETATM 86 C C2 . 5CM A 1 5 ? 11.729 17.125 11.727 1.00 10.00 ? 5 5CM A C2 1 HETATM 87 N N3 . 5CM A 1 5 ? 10.386 16.994 11.537 1.00 10.00 ? 5 5CM A N3 1 HETATM 88 C C4 . 5CM A 1 5 ? 9.494 18.058 11.578 1.00 10.00 ? 5 5CM A C4 1 HETATM 89 C C5 . 5CM A 1 5 ? 10.022 19.360 11.823 1.00 10.00 ? 5 5CM A C5 1 HETATM 90 C C5A . 5CM A 1 5 ? 9.100 20.552 11.882 1.00 10.00 ? 5 5CM A C5A 1 HETATM 91 C C6 . 5CM A 1 5 ? 11.354 19.488 11.982 1.00 10.00 ? 5 5CM A C6 1 HETATM 92 O O2 . 5CM A 1 5 ? 12.459 16.147 11.691 1.00 10.00 ? 5 5CM A O2 1 HETATM 93 N N4 . 5CM A 1 5 ? 8.177 17.789 11.410 1.00 10.00 ? 5 5CM A N4 1 HETATM 94 C "C1'" . 5CM A 1 5 ? 13.712 18.455 12.095 1.00 10.00 ? 5 5CM A "C1'" 1 HETATM 95 C "C2'" . 5CM A 1 5 ? 14.450 18.568 10.692 1.00 10.00 ? 5 5CM A "C2'" 1 HETATM 96 C "C3'" . 5CM A 1 5 ? 15.751 19.158 11.178 1.00 10.00 ? 5 5CM A "C3'" 1 HETATM 97 C "C4'" . 5CM A 1 5 ? 15.385 20.075 12.381 1.00 10.00 ? 5 5CM A "C4'" 1 HETATM 98 O "O4'" . 5CM A 1 5 ? 14.110 19.629 12.745 1.00 10.00 ? 5 5CM A "O4'" 1 HETATM 99 O "O3'" . 5CM A 1 5 ? 16.561 18.156 11.723 1.00 10.00 ? 5 5CM A "O3'" 1 HETATM 100 C "C5'" . 5CM A 1 5 ? 15.307 21.573 12.064 1.00 10.00 ? 5 5CM A "C5'" 1 HETATM 101 O "O5'" . 5CM A 1 5 ? 14.506 21.720 10.928 1.00 10.00 ? 5 5CM A "O5'" 1 HETATM 102 P P A 5CM A 1 5 ? 13.959 23.218 10.569 0.50 10.00 ? 5 5CM A P 1 HETATM 103 P P B 5CM A 1 5 ? 14.918 22.521 9.570 0.50 10.00 ? 5 5CM A P 1 HETATM 104 O OP1 A 5CM A 1 5 ? 12.773 23.524 11.391 0.50 10.00 ? 5 5CM A OP1 1 HETATM 105 O OP1 B 5CM A 1 5 ? 15.560 21.702 8.544 0.50 10.00 ? 5 5CM A OP1 1 HETATM 106 O OP2 A 5CM A 1 5 ? 15.103 24.016 10.556 0.50 10.00 ? 5 5CM A OP2 1 HETATM 107 O OP2 B 5CM A 1 5 ? 15.613 23.680 10.083 0.50 10.00 ? 5 5CM A OP2 1 ATOM 108 P P . DG A 1 6 ? 18.133 18.134 11.578 1.00 10.00 ? 6 DG A P 1 ATOM 109 O OP1 . DG A 1 6 ? 18.419 18.593 10.238 1.00 10.00 ? 6 DG A OP1 1 ATOM 110 O OP2 . DG A 1 6 ? 18.453 16.847 12.095 1.00 10.00 ? 6 DG A OP2 1 ATOM 111 O "O5'" . DG A 1 6 ? 18.797 19.201 12.649 1.00 10.00 ? 6 DG A "O5'" 1 ATOM 112 C "C5'" . DG A 1 6 ? 18.875 18.883 13.985 1.00 10.00 ? 6 DG A "C5'" 1 ATOM 113 C "C4'" . DG A 1 6 ? 19.316 20.155 14.662 1.00 10.00 ? 6 DG A "C4'" 1 ATOM 114 O "O4'" . DG A 1 6 ? 18.257 21.133 14.548 1.00 10.00 ? 6 DG A "O4'" 1 ATOM 115 C "C3'" . DG A 1 6 ? 19.582 19.971 16.210 1.00 10.00 ? 6 DG A "C3'" 1 ATOM 116 O "O3'" . DG A 1 6 ? 20.696 20.794 16.560 1.00 10.00 ? 6 DG A "O3'" 1 ATOM 117 C "C2'" . DG A 1 6 ? 18.316 20.402 16.814 1.00 10.00 ? 6 DG A "C2'" 1 ATOM 118 C "C1'" . DG A 1 6 ? 17.778 21.503 15.870 1.00 10.00 ? 6 DG A "C1'" 1 ATOM 119 N N9 . DG A 1 6 ? 16.368 21.616 15.861 1.00 10.00 ? 6 DG A N9 1 ATOM 120 C C8 . DG A 1 6 ? 15.675 22.769 15.861 1.00 10.00 ? 6 DG A C8 1 ATOM 121 N N7 . DG A 1 6 ? 14.370 22.607 15.806 1.00 10.00 ? 6 DG A N7 1 ATOM 122 C C5 . DG A 1 6 ? 14.224 21.258 15.747 1.00 10.00 ? 6 DG A C5 1 ATOM 123 C C6 . DG A 1 6 ? 13.041 20.451 15.674 1.00 10.00 ? 6 DG A C6 1 ATOM 124 O O6 . DG A 1 6 ? 11.858 20.892 15.652 1.00 10.00 ? 6 DG A O6 1 ATOM 125 N N1 . DG A 1 6 ? 13.219 19.112 15.656 1.00 10.00 ? 6 DG A N1 1 ATOM 126 C C2 . DG A 1 6 ? 14.462 18.617 15.674 1.00 10.00 ? 6 DG A C2 1 ATOM 127 N N2 . DG A 1 6 ? 14.622 17.373 15.624 1.00 10.00 ? 6 DG A N2 1 ATOM 128 N N3 . DG A 1 6 ? 15.632 19.262 15.733 1.00 10.00 ? 6 DG A N3 1 ATOM 129 C C4 . DG A 1 6 ? 15.416 20.604 15.774 1.00 10.00 ? 6 DG A C4 1 HETATM 130 N N1 . 5CM B 1 1 ? 10.040 15.349 14.902 1.00 10.00 ? 7 5CM B N1 1 HETATM 131 C C2 . 5CM B 1 1 ? 11.121 16.138 15.079 1.00 10.00 ? 7 5CM B C2 1 HETATM 132 N N3 . 5CM B 1 1 ? 10.848 17.492 15.184 1.00 10.00 ? 7 5CM B N3 1 HETATM 133 C C4 . 5CM B 1 1 ? 9.608 18.061 15.125 1.00 10.00 ? 7 5CM B C4 1 HETATM 134 C C5 . 5CM B 1 1 ? 8.516 17.190 14.902 1.00 10.00 ? 7 5CM B C5 1 HETATM 135 C C5A . 5CM B 1 1 ? 7.111 17.724 14.816 1.00 10.00 ? 7 5CM B C5A 1 HETATM 136 C C6 . 5CM B 1 1 ? 8.777 15.872 14.798 1.00 10.00 ? 7 5CM B C6 1 HETATM 137 O O2 . 5CM B 1 1 ? 12.279 15.740 15.170 1.00 10.00 ? 7 5CM B O2 1 HETATM 138 N N4 . 5CM B 1 1 ? 9.530 19.409 15.257 1.00 10.00 ? 7 5CM B N4 1 HETATM 139 C "C1'" . 5CM B 1 1 ? 10.349 13.885 14.793 1.00 10.00 ? 7 5CM B "C1'" 1 HETATM 140 C "C2'" . 5CM B 1 1 ? 10.200 13.212 16.210 1.00 10.00 ? 7 5CM B "C2'" 1 HETATM 141 C "C3'" . 5CM B 1 1 ? 9.986 11.742 15.738 1.00 10.00 ? 7 5CM B "C3'" 1 HETATM 142 C "C4'" . 5CM B 1 1 ? 9.120 11.876 14.480 1.00 10.00 ? 7 5CM B "C4'" 1 HETATM 143 O "O4'" . 5CM B 1 1 ? 9.333 13.273 14.030 1.00 10.00 ? 7 5CM B "O4'" 1 HETATM 144 O "O3'" . 5CM B 1 1 ? 11.226 11.173 15.497 1.00 10.00 ? 7 5CM B "O3'" 1 HETATM 145 C "C5'" . 5CM B 1 1 ? 7.639 11.647 14.648 1.00 10.00 ? 7 5CM B "C5'" 1 HETATM 146 O "O5'" . 5CM B 1 1 ? 7.111 12.561 15.611 1.00 10.00 ? 7 5CM B "O5'" 1 ATOM 147 P P . DG B 1 2 ? 11.480 9.602 15.606 1.00 10.00 ? 8 DG B P 1 ATOM 148 O OP1 . DG B 1 2 ? 10.729 9.171 16.710 1.00 10.00 ? 8 DG B OP1 1 ATOM 149 O OP2 . DG B 1 2 ? 12.928 9.468 15.520 1.00 10.00 ? 8 DG B OP2 1 ATOM 150 O "O5'" . DG B 1 2 ? 10.656 8.908 14.380 1.00 10.00 ? 8 DG B "O5'" 1 ATOM 151 C "C5'" . DG B 1 2 ? 11.281 9.229 13.126 1.00 10.00 ? 8 DG B "C5'" 1 ATOM 152 C "C4'" . DG B 1 2 ? 10.331 8.557 12.141 1.00 10.00 ? 8 DG B "C4'" 1 ATOM 153 O "O4'" . DG B 1 2 ? 9.003 9.018 12.245 1.00 10.00 ? 8 DG B "O4'" 1 ATOM 154 C "C3'" . DG B 1 2 ? 10.784 8.792 10.660 1.00 10.00 ? 8 DG B "C3'" 1 ATOM 155 O "O3'" . DG B 1 2 ? 11.501 7.639 10.238 1.00 10.00 ? 8 DG B "O3'" 1 ATOM 156 C "C2'" . DG B 1 2 ? 9.553 9.049 9.897 1.00 10.00 ? 8 DG B "C2'" 1 ATOM 157 C "C1'" . DG B 1 2 ? 8.431 9.263 10.942 1.00 10.00 ? 8 DG B "C1'" 1 ATOM 158 N N9 . DG B 1 2 ? 7.909 10.583 10.955 1.00 10.00 ? 8 DG B N9 1 ATOM 159 C C8 . DG B 1 2 ? 6.614 10.904 10.969 1.00 10.00 ? 8 DG B C8 1 ATOM 160 N N7 . DG B 1 2 ? 6.383 12.216 11.005 1.00 10.00 ? 8 DG B N7 1 ATOM 161 C C5 . DG B 1 2 ? 7.647 12.742 11.028 1.00 10.00 ? 8 DG B C5 1 ATOM 162 C C6 . DG B 1 2 ? 8.111 14.093 11.114 1.00 10.00 ? 8 DG B C6 1 ATOM 163 O O6 . DG B 1 2 ? 7.340 15.102 11.169 1.00 10.00 ? 8 DG B O6 1 ATOM 164 N N1 . DG B 1 2 ? 9.431 14.270 11.119 1.00 10.00 ? 8 DG B N1 1 ATOM 165 C C2 . DG B 1 2 ? 10.279 13.237 11.087 1.00 10.00 ? 8 DG B C2 1 ATOM 166 N N2 . DG B 1 2 ? 11.508 13.448 11.151 1.00 10.00 ? 8 DG B N2 1 ATOM 167 N N3 . DG B 1 2 ? 9.958 11.938 11.033 1.00 10.00 ? 8 DG B N3 1 ATOM 168 C C4 . DG B 1 2 ? 8.621 11.785 11.019 1.00 10.00 ? 8 DG B C4 1 HETATM 169 N N1 . 5CM B 1 3 ? 11.794 12.482 7.367 1.00 10.00 ? 9 5CM B N1 1 HETATM 170 C C2 . 5CM B 1 3 ? 11.642 13.836 7.585 1.00 10.00 ? 9 5CM B C2 1 HETATM 171 N N3 . 5CM B 1 3 ? 10.358 14.298 7.676 1.00 10.00 ? 9 5CM B N3 1 HETATM 172 C C4 . 5CM B 1 3 ? 9.226 13.509 7.594 1.00 10.00 ? 9 5CM B C4 1 HETATM 173 C C5 . 5CM B 1 3 ? 9.439 12.112 7.372 1.00 10.00 ? 9 5CM B C5 1 HETATM 174 C C5A . 5CM B 1 3 ? 8.280 11.146 7.244 1.00 10.00 ? 9 5CM B C5A 1 HETATM 175 C C6 . 5CM B 1 3 ? 10.690 11.666 7.258 1.00 10.00 ? 9 5CM B C6 1 HETATM 176 O O2 . 5CM B 1 3 ? 12.597 14.588 7.676 1.00 10.00 ? 9 5CM B O2 1 HETATM 177 N N4 . 5CM B 1 3 ? 8.010 14.090 7.726 1.00 10.00 ? 9 5CM B N4 1 HETATM 178 C "C1'" . 5CM B 1 3 ? 13.205 12.023 7.258 1.00 10.00 ? 9 5CM B "C1'" 1 HETATM 179 C "C2'" . 5CM B 1 3 ? 13.766 11.745 8.702 1.00 10.00 ? 9 5CM B "C2'" 1 HETATM 180 C "C3'" . 5CM B 1 3 ? 14.954 10.837 8.312 1.00 10.00 ? 9 5CM B "C3'" 1 HETATM 181 C "C4'" . 5CM B 1 3 ? 14.421 10.027 7.122 1.00 10.00 ? 9 5CM B "C4'" 1 HETATM 182 O "O4'" . 5CM B 1 3 ? 13.293 10.767 6.604 1.00 10.00 ? 9 5CM B "O4'" 1 HETATM 183 O "O3'" . 5CM B 1 3 ? 16.037 11.592 7.839 1.00 10.00 ? 9 5CM B "O3'" 1 HETATM 184 C "C5'" . 5CM B 1 3 ? 13.950 8.605 7.458 1.00 10.00 ? 9 5CM B "C5'" 1 HETATM 185 O "O5'" . 5CM B 1 3 ? 12.943 8.618 8.385 1.00 10.00 ? 9 5CM B "O5'" 1 HETATM 186 P P . 5CM B 1 3 ? 13.013 7.765 9.806 1.00 10.00 ? 9 5CM B P 1 HETATM 187 O OP1 . 5CM B 1 3 ? 13.341 6.469 9.347 1.00 10.00 ? 9 5CM B OP1 1 HETATM 188 O OP2 . 5CM B 1 3 ? 13.791 8.502 10.778 1.00 10.00 ? 9 5CM B OP2 1 ATOM 189 P P . DG B 1 4 ? 17.536 11.115 7.917 1.00 10.00 ? 10 DG B P 1 ATOM 190 O OP1 . DG B 1 4 ? 17.758 10.382 9.084 1.00 10.00 ? 10 DG B OP1 1 ATOM 191 O OP2 . DG B 1 4 ? 18.335 12.359 7.667 1.00 10.00 ? 10 DG B OP2 1 ATOM 192 O "O5'" . DG B 1 4 ? 17.696 10.048 6.709 1.00 10.00 ? 10 DG B "O5'" 1 ATOM 193 C "C5'" . DG B 1 4 ? 17.776 10.672 5.414 1.00 10.00 ? 10 DG B "C5'" 1 ATOM 194 C "C4'" . DG B 1 4 ? 17.890 9.526 4.438 1.00 10.00 ? 10 DG B "C4'" 1 ATOM 195 O "O4'" . DG B 1 4 ? 16.828 8.578 4.551 1.00 10.00 ? 10 DG B "O4'" 1 ATOM 196 C "C3'" . DG B 1 4 ? 17.819 10.015 2.930 1.00 10.00 ? 10 DG B "C3'" 1 ATOM 197 O "O3'" . DG B 1 4 ? 19.161 10.051 2.484 1.00 10.00 ? 10 DG B "O3'" 1 ATOM 198 C "C2'" . DG B 1 4 ? 16.959 9.070 2.194 1.00 10.00 ? 10 DG B "C2'" 1 ATOM 199 C "C1'" . DG B 1 4 ? 16.222 8.239 3.248 1.00 10.00 ? 10 DG B "C1'" 1 ATOM 200 N N9 . DG B 1 4 ? 14.840 8.450 3.393 1.00 10.00 ? 10 DG B N9 1 ATOM 201 C C8 . DG B 1 4 ? 13.911 7.508 3.511 1.00 10.00 ? 10 DG B C8 1 ATOM 202 N N7 . DG B 1 4 ? 12.681 7.979 3.688 1.00 10.00 ? 10 DG B N7 1 ATOM 203 C C5 . DG B 1 4 ? 12.856 9.296 3.656 1.00 10.00 ? 10 DG B C5 1 ATOM 204 C C6 . DG B 1 4 ? 11.905 10.369 3.788 1.00 10.00 ? 10 DG B C6 1 ATOM 205 O O6 . DG B 1 4 ? 10.668 10.232 3.956 1.00 10.00 ? 10 DG B O6 1 ATOM 206 N N1 . DG B 1 4 ? 12.389 11.620 3.738 1.00 10.00 ? 10 DG B N1 1 ATOM 207 C C2 . DG B 1 4 ? 13.697 11.834 3.593 1.00 10.00 ? 10 DG B C2 1 ATOM 208 N N2 . DG B 1 4 ? 14.153 12.983 3.575 1.00 10.00 ? 10 DG B N2 1 ATOM 209 N N3 . DG B 1 4 ? 14.682 10.904 3.447 1.00 10.00 ? 10 DG B N3 1 ATOM 210 C C4 . DG B 1 4 ? 14.151 9.296 3.484 1.00 10.00 ? 10 DG B C4 1 HETATM 211 N N1 . 5CM B 1 5 ? 14.888 12.421 -0.309 1.00 10.00 ? 11 5CM B N1 1 HETATM 212 C C2 . 5CM B 1 5 ? 13.657 12.977 -0.100 1.00 10.00 ? 11 5CM B C2 1 HETATM 213 N N3 . 5CM B 1 5 ? 12.620 12.112 0.055 1.00 10.00 ? 11 5CM B N3 1 HETATM 214 C C4 . 5CM B 1 5 ? 12.725 10.721 0.055 1.00 10.00 ? 11 5CM B C4 1 HETATM 215 C C5 . 5CM B 1 5 ? 14.016 10.195 -0.136 1.00 10.00 ? 11 5CM B C5 1 HETATM 216 C C5A . 5CM B 1 5 ? 14.231 8.706 -0.168 1.00 10.00 ? 11 5CM B C5A 1 HETATM 217 C C6 . 5CM B 1 5 ? 15.034 11.045 -0.327 1.00 10.00 ? 11 5CM B C6 1 HETATM 218 O O2 . 5CM B 1 5 ? 13.462 14.175 -0.077 1.00 10.00 ? 11 5CM B O2 1 HETATM 219 N N4 . 5CM B 1 5 ? 11.588 10.009 0.263 1.00 10.00 ? 11 5CM B N4 1 HETATM 220 C "C1'" . 5CM B 1 5 ? 15.991 13.423 -0.468 1.00 10.00 ? 11 5CM B "C1'" 1 HETATM 221 C "C2'" . 5CM B 1 5 ? 16.636 13.775 0.936 1.00 10.00 ? 11 5CM B "C2'" 1 HETATM 222 C "C3'" . 5CM B 1 5 ? 17.991 14.298 0.472 1.00 10.00 ? 11 5CM B "C3'" 1 HETATM 223 C "C4'" . 5CM B 1 5 ? 18.312 13.396 -0.768 1.00 10.00 ? 11 5CM B "C4'" 1 HETATM 224 O "O4'" . 5CM B 1 5 ? 17.053 12.794 -1.158 1.00 10.00 ? 11 5CM B "O4'" 1 HETATM 225 O "O3'" . 5CM B 1 5 ? 17.938 15.591 -0.100 1.00 10.00 ? 11 5CM B "O3'" 1 HETATM 226 C "C5'" . 5CM B 1 5 ? 19.385 12.323 -0.554 1.00 10.00 ? 11 5CM B "C5'" 1 HETATM 227 O "O5'" . 5CM B 1 5 ? 18.929 11.467 0.436 1.00 10.00 ? 11 5CM B "O5'" 1 HETATM 228 P P . 5CM B 1 5 ? 19.765 11.393 1.867 1.00 10.00 ? 11 5CM B P 1 HETATM 229 O OP1 . 5CM B 1 5 ? 20.996 10.907 1.294 1.00 10.00 ? 11 5CM B OP1 1 HETATM 230 O OP2 . 5CM B 1 5 ? 19.602 12.482 2.811 1.00 10.00 ? 11 5CM B OP2 1 ATOM 231 P P . DG B 1 6 ? 19.074 16.703 -0.041 1.00 10.00 ? 12 DG B P 1 ATOM 232 O OP1 . DG B 1 6 ? 19.563 16.517 1.267 1.00 10.00 ? 12 DG B OP1 1 ATOM 233 O OP2 . DG B 1 6 ? 18.444 17.945 -0.531 1.00 10.00 ? 12 DG B OP2 1 ATOM 234 O "O5'" . DG B 1 6 ? 20.374 16.239 -0.927 1.00 10.00 ? 12 DG B "O5'" 1 ATOM 235 C "C5'" . DG B 1 6 ? 20.145 16.468 -2.348 1.00 10.00 ? 12 DG B "C5'" 1 ATOM 236 C "C4'" . DG B 1 6 ? 21.307 15.780 -3.070 1.00 10.00 ? 12 DG B "C4'" 1 ATOM 237 O "O4'" . DG B 1 6 ? 21.193 14.353 -2.930 1.00 10.00 ? 12 DG B "O4'" 1 ATOM 238 C "C3'" . DG B 1 6 ? 21.411 16.074 -4.606 1.00 10.00 ? 12 DG B "C3'" 1 ATOM 239 O "O3'" . DG B 1 6 ? 22.804 16.159 -4.996 1.00 10.00 ? 12 DG B "O3'" 1 ATOM 240 C "C2'" . DG B 1 6 ? 20.690 14.912 -5.201 1.00 10.00 ? 12 DG B "C2'" 1 ATOM 241 C "C1'" . DG B 1 6 ? 21.115 13.756 -4.247 1.00 10.00 ? 12 DG B "C1'" 1 ATOM 242 N N9 . DG B 1 6 ? 20.191 12.702 -4.201 1.00 10.00 ? 12 DG B N9 1 ATOM 243 C C8 . DG B 1 6 ? 20.486 11.409 -4.156 1.00 10.00 ? 12 DG B C8 1 ATOM 244 N N7 . DG B 1 6 ? 19.413 10.614 -4.079 1.00 10.00 ? 12 DG B N7 1 ATOM 245 C C5 . DG B 1 6 ? 18.383 11.507 -4.097 1.00 10.00 ? 12 DG B C5 1 ATOM 246 C C6 . DG B 1 6 ? 16.964 11.290 -4.070 1.00 10.00 ? 12 DG B C6 1 ATOM 247 O O6 . DG B 1 6 ? 16.437 10.137 -4.011 1.00 10.00 ? 12 DG B O6 1 ATOM 248 N N1 . DG B 1 6 ? 16.172 12.515 -4.079 1.00 10.00 ? 12 DG B N1 1 ATOM 249 C C2 . DG B 1 6 ? 16.741 13.607 -4.115 1.00 10.00 ? 12 DG B C2 1 ATOM 250 N N2 . DG B 1 6 ? 16.005 14.606 -4.115 1.00 10.00 ? 12 DG B N2 1 ATOM 251 N N3 . DG B 1 6 ? 18.044 13.928 -4.179 1.00 10.00 ? 12 DG B N3 1 ATOM 252 C C4 . DG B 1 6 ? 18.799 12.803 -4.156 1.00 10.00 ? 12 DG B C4 1 #