data_1VTW # _entry.id 1VTW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1VTW pdb_00001vtw 10.2210/pdb1vtw/pdb NDB ZDFB06 ? ? RCSB RCSB003053 ? ? WWPDB D_1000003053 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-07-13 2 'Structure model' 1 1 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1VTW _pdbx_database_status.recvd_initial_deposition_date 1988-08-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wang, A.H.-J.' 1 'Hakoshima, T.' 2 'Van Der Marel, G.A.' 3 'Van Boom, J.H.' 4 'Rich, A.' 5 # _citation.id primary _citation.title 'AT Base Pairs Are Less Stable than GC Base Pairs in Z-DNA: The Crystal Structure of d(m(5)CGTAm(5)CG)' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 37 _citation.page_first 321 _citation.page_last 331 _citation.year 1984 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 6722876 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, A.H.-J.' 1 ? primary 'Hakoshima, T.' 2 ? primary 'Van Der Marel, G.A.' 3 ? primary 'Van Boom, J.H.' 4 ? primary 'Rich, A.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA (5'-D(*(CH3)CP*GP*TP*AP*(CH3)CP*G)-3') ; _entity.formula_weight 1837.271 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(5CM)(DG)(DT)(DA)(5CM)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGTACG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 5CM n 1 2 DG n 1 3 DT n 1 4 DA n 1 5 5CM n 1 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 5CM 1 1 1 5CM 5CM A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DT 3 3 3 DT T A . n A 1 4 DA 4 4 4 DA DA A . n A 1 5 5CM 5 5 5 5CM 5CM A . n A 1 6 DG 6 6 6 DG DG A . n B 1 1 5CM 1 7 7 5CM 5CM B . n B 1 2 DG 2 8 8 DG DG B . n B 1 3 DT 3 9 9 DT T B . n B 1 4 DA 4 10 10 DA DA B . n B 1 5 5CM 5 11 11 5CM 5CM B . n B 1 6 DG 6 12 12 DG DG B . n # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1VTW _cell.length_a 17.910 _cell.length_b 30.430 _cell.length_c 44.960 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1VTW _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1VTW _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 26.22 _exptl_crystal.density_Matthews 1.67 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details 'ROOM TEMPERATURE' _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details 'VAPOR DIFFUSION' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER 1 2 3 1 2 1 MPD 4 5 6 1 3 1 'NA CACODYLATE' 7 8 9 1 4 1 MGCL2 10 11 12 1 5 1 SPERMINE 13 14 15 1 6 2 WATER 16 17 18 1 7 2 MPD 19 20 21 # _diffrn.id 1 _diffrn.ambient_temp 263.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'NICOLET P3' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _reflns.entry_id 1VTW _reflns.observed_criterion_sigma_I 1.500 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 1.200 _reflns.number_obs 5412 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _refine.entry_id 1VTW _refine.ls_number_reflns_obs 5412 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I 1.500 _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 1.200 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1600000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 244 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 244 _refine_hist.d_res_high 1.200 _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 1VTW _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1VTW _struct.title 'AT Base Pairs Are Less Stable than GC Base Pairs in Z-DNA: The Crystal Structure of D(M(5)CGTAM(5)CG)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1VTW _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Z-DNA, DOUBLE HELIX, MODIFIED, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 1VTW _struct_ref.pdbx_db_accession 1VTW _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code CGTACG _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1VTW A 1 ? 6 ? 1VTW 1 ? 6 ? 1 6 2 1 1VTW B 1 ? 6 ? 1VTW 7 ? 12 ? 7 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2310 ? 1 MORE 16 ? 1 'SSA (A^2)' 2110 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A 5CM 1 "O3'" ? ? ? 1_555 A DG 2 P ? ? A 5CM 1 A DG 2 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale2 covale both ? A DA 4 "O3'" ? ? ? 1_555 A 5CM 5 P ? ? A DA 4 A 5CM 5 1_555 ? ? ? ? ? ? ? 1.593 ? ? covale3 covale both ? A 5CM 5 "O3'" ? ? ? 1_555 A DG 6 P ? ? A 5CM 5 A DG 6 1_555 ? ? ? ? ? ? ? 1.572 ? ? covale4 covale both ? B 5CM 1 "O3'" ? ? ? 1_555 B DG 2 P ? ? B 5CM 7 B DG 8 1_555 ? ? ? ? ? ? ? 1.651 ? ? covale5 covale both ? B DA 4 "O3'" ? ? ? 1_555 B 5CM 5 P ? ? B DA 10 B 5CM 11 1_555 ? ? ? ? ? ? ? 1.526 ? ? covale6 covale both ? B 5CM 5 "O3'" ? ? ? 1_555 B DG 6 P ? ? B 5CM 11 B DG 12 1_555 ? ? ? ? ? ? ? 1.580 ? ? hydrog1 hydrog ? ? A 5CM 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A 5CM 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A 5CM 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A 5CM 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A 5CM 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A 5CM 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B 5CM 5 N3 ? ? A DG 2 B 5CM 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B 5CM 5 O2 ? ? A DG 2 B 5CM 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B 5CM 5 N4 ? ? A DG 2 B 5CM 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A 5CM 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A 5CM 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A 5CM 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A 5CM 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A 5CM 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A 5CM 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B 5CM 1 N3 ? ? A DG 6 B 5CM 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B 5CM 1 O2 ? ? A DG 6 B 5CM 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B 5CM 1 N4 ? ? A DG 6 B 5CM 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A DG 2 ? ? OP2 A DG 2 ? ? 1.373 1.485 -0.112 0.017 N 2 1 "C4'" A DG 2 ? ? "C3'" A DG 2 ? ? 1.618 1.529 0.089 0.010 N 3 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? 1.405 1.516 -0.111 0.008 N 4 1 "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 1.579 1.519 0.060 0.010 N 5 1 C6 A DG 2 ? ? N1 A DG 2 ? ? 1.342 1.391 -0.049 0.007 N 6 1 C2 A DG 2 ? ? N2 A DG 2 ? ? 1.259 1.341 -0.082 0.010 N 7 1 "O4'" A DT 3 ? ? "C4'" A DT 3 ? ? 1.507 1.449 0.058 0.009 N 8 1 "O3'" A DT 3 ? ? "C3'" A DT 3 ? ? 1.360 1.419 -0.059 0.006 N 9 1 P A DA 4 ? ? "O5'" A DA 4 ? ? 1.674 1.593 0.081 0.010 N 10 1 "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? 1.589 1.512 0.077 0.007 N 11 1 "C3'" A DA 4 ? ? "C2'" A DA 4 ? ? 1.421 1.516 -0.095 0.008 N 12 1 C4 A DA 4 ? ? C5 A DA 4 ? ? 1.339 1.383 -0.044 0.007 N 13 1 C8 A DA 4 ? ? N9 A DA 4 ? ? 1.303 1.373 -0.070 0.008 N 14 1 P A DG 6 ? ? "O5'" A DG 6 ? ? 1.690 1.593 0.097 0.010 N 15 1 C6 A DG 6 ? ? N1 A DG 6 ? ? 1.345 1.391 -0.046 0.007 N 16 1 P B DG 8 ? ? OP1 B DG 8 ? ? 1.366 1.485 -0.119 0.017 N 17 1 C6 B DG 8 ? ? N1 B DG 8 ? ? 1.345 1.391 -0.046 0.007 N 18 1 C2 B DG 8 ? ? N2 B DG 8 ? ? 1.263 1.341 -0.078 0.010 N 19 1 "C5'" B DT 9 ? ? "C4'" B DT 9 ? ? 1.597 1.512 0.085 0.007 N 20 1 C5 B DT 9 ? ? C6 B DT 9 ? ? 1.283 1.339 -0.056 0.007 N 21 1 "O4'" B DA 10 ? ? "C4'" B DA 10 ? ? 1.346 1.446 -0.100 0.010 N 22 1 C2 B DA 10 ? ? N3 B DA 10 ? ? 1.390 1.331 0.059 0.009 N 23 1 C8 B DA 10 ? ? N9 B DA 10 ? ? 1.322 1.373 -0.051 0.008 N 24 1 "O3'" B DA 10 ? ? P B 5CM 11 ? ? 1.526 1.607 -0.081 0.012 Y 25 1 "C3'" B DG 12 ? ? "C2'" B DG 12 ? ? 1.452 1.516 -0.064 0.008 N 26 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? 1.486 1.420 0.066 0.011 N 27 1 C2 B DG 12 ? ? N2 B DG 12 ? ? 1.249 1.341 -0.092 0.010 N 28 1 C6 B DG 12 ? ? O6 B DG 12 ? ? 1.294 1.237 0.057 0.009 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 OP1 A DG 2 ? ? P A DG 2 ? ? OP2 A DG 2 ? ? 133.11 119.60 13.51 1.50 N 2 1 "O5'" A DG 2 ? ? P A DG 2 ? ? OP1 A DG 2 ? ? 96.18 105.70 -9.52 0.90 N 3 1 C4 A DG 2 ? ? C5 A DG 2 ? ? C6 A DG 2 ? ? 114.44 118.80 -4.36 0.60 N 4 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 117.07 111.50 5.57 0.50 N 5 1 N3 A DG 2 ? ? C2 A DG 2 ? ? N2 A DG 2 ? ? 113.14 119.90 -6.76 0.70 N 6 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 123.84 128.60 -4.76 0.60 N 7 1 C2 A DT 3 ? ? N3 A DT 3 ? ? C4 A DT 3 ? ? 121.68 127.20 -5.52 0.60 N 8 1 N3 A DT 3 ? ? C4 A DT 3 ? ? C5 A DT 3 ? ? 120.95 115.20 5.75 0.60 N 9 1 N3 A DT 3 ? ? C2 A DT 3 ? ? O2 A DT 3 ? ? 118.53 122.30 -3.77 0.60 N 10 1 OP1 A DA 4 ? ? P A DA 4 ? ? OP2 A DA 4 ? ? 129.60 119.60 10.00 1.50 N 11 1 "O5'" A DA 4 ? ? "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? 98.67 109.40 -10.73 0.80 N 12 1 "O4'" A DA 4 ? ? "C4'" A DA 4 ? ? "C3'" A DA 4 ? ? 102.06 104.50 -2.44 0.40 N 13 1 "C1'" A DA 4 ? ? "O4'" A DA 4 ? ? "C4'" A DA 4 ? ? 115.04 110.30 4.74 0.70 N 14 1 "C3'" A DA 4 ? ? "C2'" A DA 4 ? ? "C1'" A DA 4 ? ? 110.53 102.50 8.03 1.20 N 15 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? "C2'" A DA 4 ? ? 100.10 105.90 -5.80 0.80 N 16 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.58 108.30 2.28 0.30 N 17 1 C6 A DG 6 ? ? N1 A DG 6 ? ? C2 A DG 6 ? ? 119.95 125.10 -5.15 0.60 N 18 1 N1 A DG 6 ? ? C2 A DG 6 ? ? N3 A DG 6 ? ? 128.43 123.90 4.53 0.60 N 19 1 C5 A DG 6 ? ? C6 A DG 6 ? ? N1 A DG 6 ? ? 115.94 111.50 4.44 0.50 N 20 1 C5 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 123.33 128.60 -5.27 0.60 N 21 1 OP1 B DG 8 ? ? P B DG 8 ? ? OP2 B DG 8 ? ? 129.38 119.60 9.78 1.50 N 22 1 C6 B DG 8 ? ? N1 B DG 8 ? ? C2 B DG 8 ? ? 118.61 125.10 -6.49 0.60 N 23 1 N1 B DG 8 ? ? C2 B DG 8 ? ? N3 B DG 8 ? ? 128.59 123.90 4.69 0.60 N 24 1 C4 B DG 8 ? ? C5 B DG 8 ? ? C6 B DG 8 ? ? 113.99 118.80 -4.81 0.60 N 25 1 C5 B DG 8 ? ? C6 B DG 8 ? ? N1 B DG 8 ? ? 118.19 111.50 6.69 0.50 N 26 1 C4 B DG 8 ? ? C5 B DG 8 ? ? N7 B DG 8 ? ? 115.56 110.80 4.76 0.40 N 27 1 C5 B DG 8 ? ? N7 B DG 8 ? ? C8 B DG 8 ? ? 99.95 104.30 -4.35 0.50 N 28 1 N9 B DG 8 ? ? C4 B DG 8 ? ? C5 B DG 8 ? ? 101.99 105.40 -3.41 0.40 N 29 1 N3 B DG 8 ? ? C2 B DG 8 ? ? N2 B DG 8 ? ? 114.33 119.90 -5.57 0.70 N 30 1 N1 B DG 8 ? ? C6 B DG 8 ? ? O6 B DG 8 ? ? 115.45 119.90 -4.45 0.60 N 31 1 N1 B DT 9 ? ? C2 B DT 9 ? ? N3 B DT 9 ? ? 119.84 114.60 5.24 0.60 N 32 1 C2 B DT 9 ? ? N3 B DT 9 ? ? C4 B DT 9 ? ? 122.09 127.20 -5.11 0.60 N 33 1 N3 B DT 9 ? ? C4 B DT 9 ? ? O4 B DT 9 ? ? 115.27 119.90 -4.63 0.60 N 34 1 "O5'" B DA 10 ? ? "C5'" B DA 10 ? ? "C4'" B DA 10 ? ? 100.11 109.40 -9.29 0.80 N 35 1 "C1'" B DA 10 ? ? "O4'" B DA 10 ? ? "C4'" B DA 10 ? ? 119.77 110.30 9.47 0.70 N 36 1 "O4'" B DA 10 ? ? "C1'" B DA 10 ? ? N9 B DA 10 ? ? 111.95 108.30 3.65 0.30 N 37 1 C2 B DA 10 ? ? N3 B DA 10 ? ? C4 B DA 10 ? ? 104.77 110.60 -5.83 0.50 N 38 1 C4 B DA 10 ? ? C5 B DA 10 ? ? N7 B DA 10 ? ? 114.70 110.70 4.00 0.50 N 39 1 C5 B DA 10 ? ? N7 B DA 10 ? ? C8 B DA 10 ? ? 96.80 103.90 -7.10 0.50 N 40 1 N7 B DA 10 ? ? C8 B DA 10 ? ? N9 B DA 10 ? ? 121.86 113.80 8.06 0.50 N 41 1 C8 B DA 10 ? ? N9 B DA 10 ? ? C4 B DA 10 ? ? 101.41 105.80 -4.39 0.40 N 42 1 C6 B DA 10 ? ? C5 B DA 10 ? ? N7 B DA 10 ? ? 127.10 132.30 -5.20 0.70 N 43 1 "O5'" B DG 12 ? ? "C5'" B DG 12 ? ? "C4'" B DG 12 ? ? 104.06 109.40 -5.34 0.80 N 44 1 P B DG 12 ? ? "O5'" B DG 12 ? ? "C5'" B DG 12 ? ? 109.93 120.90 -10.97 1.60 N 45 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 103.21 108.00 -4.79 0.70 N 46 1 C6 B DG 12 ? ? N1 B DG 12 ? ? C2 B DG 12 ? ? 117.85 125.10 -7.25 0.60 N 47 1 N1 B DG 12 ? ? C2 B DG 12 ? ? N3 B DG 12 ? ? 127.80 123.90 3.90 0.60 N 48 1 C5 B DG 12 ? ? C6 B DG 12 ? ? N1 B DG 12 ? ? 119.17 111.50 7.67 0.50 N 49 1 N1 B DG 12 ? ? C6 B DG 12 ? ? O6 B DG 12 ? ? 115.33 119.90 -4.57 0.60 N # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 5CM 1 A 5CM 1 ? DC ? 2 A 5CM 5 A 5CM 5 ? DC ? 3 B 5CM 1 B 5CM 7 ? DC ? 4 B 5CM 5 B 5CM 11 ? DC ? # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5CM N1 N N N 1 5CM C2 C N N 2 5CM N3 N N N 3 5CM C4 C N N 4 5CM C5 C N N 5 5CM C5A C N N 6 5CM C6 C N N 7 5CM O2 O N N 8 5CM N4 N N N 9 5CM "C1'" C N R 10 5CM "C2'" C N N 11 5CM "C3'" C N S 12 5CM "C4'" C N R 13 5CM "O4'" O N N 14 5CM "O3'" O N N 15 5CM "C5'" C N N 16 5CM "O5'" O N N 17 5CM P P N N 18 5CM OP1 O N N 19 5CM OP2 O N N 20 5CM OP3 O N N 21 5CM H5A1 H N N 22 5CM H5A2 H N N 23 5CM H5A3 H N N 24 5CM H6 H N N 25 5CM HN41 H N N 26 5CM HN42 H N N 27 5CM "H1'" H N N 28 5CM "H2'" H N N 29 5CM "H2''" H N N 30 5CM "H3'" H N N 31 5CM "H4'" H N N 32 5CM "HO3'" H N N 33 5CM "H5'" H N N 34 5CM "H5''" H N N 35 5CM HOP2 H N N 36 5CM HOP3 H N N 37 DA OP3 O N N 38 DA P P N N 39 DA OP1 O N N 40 DA OP2 O N N 41 DA "O5'" O N N 42 DA "C5'" C N N 43 DA "C4'" C N R 44 DA "O4'" O N N 45 DA "C3'" C N S 46 DA "O3'" O N N 47 DA "C2'" C N N 48 DA "C1'" C N R 49 DA N9 N Y N 50 DA C8 C Y N 51 DA N7 N Y N 52 DA C5 C Y N 53 DA C6 C Y N 54 DA N6 N N N 55 DA N1 N Y N 56 DA C2 C Y N 57 DA N3 N Y N 58 DA C4 C Y N 59 DA HOP3 H N N 60 DA HOP2 H N N 61 DA "H5'" H N N 62 DA "H5''" H N N 63 DA "H4'" H N N 64 DA "H3'" H N N 65 DA "HO3'" H N N 66 DA "H2'" H N N 67 DA "H2''" H N N 68 DA "H1'" H N N 69 DA H8 H N N 70 DA H61 H N N 71 DA H62 H N N 72 DA H2 H N N 73 DG OP3 O N N 74 DG P P N N 75 DG OP1 O N N 76 DG OP2 O N N 77 DG "O5'" O N N 78 DG "C5'" C N N 79 DG "C4'" C N R 80 DG "O4'" O N N 81 DG "C3'" C N S 82 DG "O3'" O N N 83 DG "C2'" C N N 84 DG "C1'" C N R 85 DG N9 N Y N 86 DG C8 C Y N 87 DG N7 N Y N 88 DG C5 C Y N 89 DG C6 C N N 90 DG O6 O N N 91 DG N1 N N N 92 DG C2 C N N 93 DG N2 N N N 94 DG N3 N N N 95 DG C4 C Y N 96 DG HOP3 H N N 97 DG HOP2 H N N 98 DG "H5'" H N N 99 DG "H5''" H N N 100 DG "H4'" H N N 101 DG "H3'" H N N 102 DG "HO3'" H N N 103 DG "H2'" H N N 104 DG "H2''" H N N 105 DG "H1'" H N N 106 DG H8 H N N 107 DG H1 H N N 108 DG H21 H N N 109 DG H22 H N N 110 DT OP3 O N N 111 DT P P N N 112 DT OP1 O N N 113 DT OP2 O N N 114 DT "O5'" O N N 115 DT "C5'" C N N 116 DT "C4'" C N R 117 DT "O4'" O N N 118 DT "C3'" C N S 119 DT "O3'" O N N 120 DT "C2'" C N N 121 DT "C1'" C N R 122 DT N1 N N N 123 DT C2 C N N 124 DT O2 O N N 125 DT N3 N N N 126 DT C4 C N N 127 DT O4 O N N 128 DT C5 C N N 129 DT C7 C N N 130 DT C6 C N N 131 DT HOP3 H N N 132 DT HOP2 H N N 133 DT "H5'" H N N 134 DT "H5''" H N N 135 DT "H4'" H N N 136 DT "H3'" H N N 137 DT "HO3'" H N N 138 DT "H2'" H N N 139 DT "H2''" H N N 140 DT "H1'" H N N 141 DT H3 H N N 142 DT H71 H N N 143 DT H72 H N N 144 DT H73 H N N 145 DT H6 H N N 146 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5CM N1 C2 sing N N 1 5CM N1 C6 sing N N 2 5CM N1 "C1'" sing N N 3 5CM C2 N3 sing N N 4 5CM C2 O2 doub N N 5 5CM N3 C4 doub N N 6 5CM C4 C5 sing N N 7 5CM C4 N4 sing N N 8 5CM C5 C5A sing N N 9 5CM C5 C6 doub N N 10 5CM C5A H5A1 sing N N 11 5CM C5A H5A2 sing N N 12 5CM C5A H5A3 sing N N 13 5CM C6 H6 sing N N 14 5CM N4 HN41 sing N N 15 5CM N4 HN42 sing N N 16 5CM "C1'" "C2'" sing N N 17 5CM "C1'" "O4'" sing N N 18 5CM "C1'" "H1'" sing N N 19 5CM "C2'" "C3'" sing N N 20 5CM "C2'" "H2'" sing N N 21 5CM "C2'" "H2''" sing N N 22 5CM "C3'" "C4'" sing N N 23 5CM "C3'" "O3'" sing N N 24 5CM "C3'" "H3'" sing N N 25 5CM "C4'" "O4'" sing N N 26 5CM "C4'" "C5'" sing N N 27 5CM "C4'" "H4'" sing N N 28 5CM "O3'" "HO3'" sing N N 29 5CM "C5'" "O5'" sing N N 30 5CM "C5'" "H5'" sing N N 31 5CM "C5'" "H5''" sing N N 32 5CM "O5'" P sing N N 33 5CM P OP1 doub N N 34 5CM P OP2 sing N N 35 5CM P OP3 sing N N 36 5CM OP2 HOP2 sing N N 37 5CM OP3 HOP3 sing N N 38 DA OP3 P sing N N 39 DA OP3 HOP3 sing N N 40 DA P OP1 doub N N 41 DA P OP2 sing N N 42 DA P "O5'" sing N N 43 DA OP2 HOP2 sing N N 44 DA "O5'" "C5'" sing N N 45 DA "C5'" "C4'" sing N N 46 DA "C5'" "H5'" sing N N 47 DA "C5'" "H5''" sing N N 48 DA "C4'" "O4'" sing N N 49 DA "C4'" "C3'" sing N N 50 DA "C4'" "H4'" sing N N 51 DA "O4'" "C1'" sing N N 52 DA "C3'" "O3'" sing N N 53 DA "C3'" "C2'" sing N N 54 DA "C3'" "H3'" sing N N 55 DA "O3'" "HO3'" sing N N 56 DA "C2'" "C1'" sing N N 57 DA "C2'" "H2'" sing N N 58 DA "C2'" "H2''" sing N N 59 DA "C1'" N9 sing N N 60 DA "C1'" "H1'" sing N N 61 DA N9 C8 sing Y N 62 DA N9 C4 sing Y N 63 DA C8 N7 doub Y N 64 DA C8 H8 sing N N 65 DA N7 C5 sing Y N 66 DA C5 C6 sing Y N 67 DA C5 C4 doub Y N 68 DA C6 N6 sing N N 69 DA C6 N1 doub Y N 70 DA N6 H61 sing N N 71 DA N6 H62 sing N N 72 DA N1 C2 sing Y N 73 DA C2 N3 doub Y N 74 DA C2 H2 sing N N 75 DA N3 C4 sing Y N 76 DG OP3 P sing N N 77 DG OP3 HOP3 sing N N 78 DG P OP1 doub N N 79 DG P OP2 sing N N 80 DG P "O5'" sing N N 81 DG OP2 HOP2 sing N N 82 DG "O5'" "C5'" sing N N 83 DG "C5'" "C4'" sing N N 84 DG "C5'" "H5'" sing N N 85 DG "C5'" "H5''" sing N N 86 DG "C4'" "O4'" sing N N 87 DG "C4'" "C3'" sing N N 88 DG "C4'" "H4'" sing N N 89 DG "O4'" "C1'" sing N N 90 DG "C3'" "O3'" sing N N 91 DG "C3'" "C2'" sing N N 92 DG "C3'" "H3'" sing N N 93 DG "O3'" "HO3'" sing N N 94 DG "C2'" "C1'" sing N N 95 DG "C2'" "H2'" sing N N 96 DG "C2'" "H2''" sing N N 97 DG "C1'" N9 sing N N 98 DG "C1'" "H1'" sing N N 99 DG N9 C8 sing Y N 100 DG N9 C4 sing Y N 101 DG C8 N7 doub Y N 102 DG C8 H8 sing N N 103 DG N7 C5 sing Y N 104 DG C5 C6 sing N N 105 DG C5 C4 doub Y N 106 DG C6 O6 doub N N 107 DG C6 N1 sing N N 108 DG N1 C2 sing N N 109 DG N1 H1 sing N N 110 DG C2 N2 sing N N 111 DG C2 N3 doub N N 112 DG N2 H21 sing N N 113 DG N2 H22 sing N N 114 DG N3 C4 sing N N 115 DT OP3 P sing N N 116 DT OP3 HOP3 sing N N 117 DT P OP1 doub N N 118 DT P OP2 sing N N 119 DT P "O5'" sing N N 120 DT OP2 HOP2 sing N N 121 DT "O5'" "C5'" sing N N 122 DT "C5'" "C4'" sing N N 123 DT "C5'" "H5'" sing N N 124 DT "C5'" "H5''" sing N N 125 DT "C4'" "O4'" sing N N 126 DT "C4'" "C3'" sing N N 127 DT "C4'" "H4'" sing N N 128 DT "O4'" "C1'" sing N N 129 DT "C3'" "O3'" sing N N 130 DT "C3'" "C2'" sing N N 131 DT "C3'" "H3'" sing N N 132 DT "O3'" "HO3'" sing N N 133 DT "C2'" "C1'" sing N N 134 DT "C2'" "H2'" sing N N 135 DT "C2'" "H2''" sing N N 136 DT "C1'" N1 sing N N 137 DT "C1'" "H1'" sing N N 138 DT N1 C2 sing N N 139 DT N1 C6 sing N N 140 DT C2 O2 doub N N 141 DT C2 N3 sing N N 142 DT N3 C4 sing N N 143 DT N3 H3 sing N N 144 DT C4 O4 doub N N 145 DT C4 C5 sing N N 146 DT C5 C7 sing N N 147 DT C5 C6 doub N N 148 DT C7 H71 sing N N 149 DT C7 H72 sing N N 150 DT C7 H73 sing N N 151 DT C6 H6 sing N N 152 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1VTW 'z-form double helix' 1VTW 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A 5CM 1 1_555 B DG 6 1_555 -0.312 -0.122 -0.012 7.169 -1.265 1.006 1 A_5CM1:DG12_B A 1 ? B 12 ? 19 1 1 A DG 2 1_555 B 5CM 5 1_555 0.180 -0.189 0.226 -10.855 0.436 2.163 2 A_DG2:5CM11_B A 2 ? B 11 ? 19 1 1 A 5CM 5 1_555 B DG 2 1_555 -0.384 -0.138 0.092 3.811 -2.888 -0.652 3 A_5CM5:DG8_B A 5 ? B 8 ? 19 1 1 A DG 6 1_555 B 5CM 1 1_555 0.189 -0.111 0.103 -4.536 0.057 3.001 4 A_DG6:5CM7_B A 6 ? B 7 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A 5CM 1 1_555 B DG 6 1_555 A DG 2 1_555 B 5CM 5 1_555 -0.017 5.986 4.079 0.376 0.586 -13.319 -26.518 0.403 3.812 -2.525 1.618 -13.337 1 AA_5CM1DG2:5CM11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A 5CM 5 1_555 B DG 2 1_555 A DG 6 1_555 B 5CM 1 1_555 0.180 5.624 3.761 -0.629 0.232 -12.002 -27.199 -0.065 3.656 -1.108 -3.003 -12.020 2 AA_5CM5DG6:5CM7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ? # _atom_sites.entry_id 1VTW _atom_sites.fract_transf_matrix[1][1] 0.055835 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.032862 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022242 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 . 5CM A 1 1 ? 11.554 12.644 -3.192 1.00 6.30 ? 1 5CM A N1 1 HETATM 2 C C2 . 5CM A 1 1 ? 12.872 12.854 -3.430 1.00 6.70 ? 1 5CM A C2 1 HETATM 3 N N3 . 5CM A 1 1 ? 13.633 11.709 -3.556 1.00 5.60 ? 1 5CM A N3 1 HETATM 4 C C4 . 5CM A 1 1 ? 13.081 10.453 -3.444 1.00 6.10 ? 1 5CM A C4 1 HETATM 5 C C5 . 5CM A 1 1 ? 11.683 10.310 -3.228 1.00 5.40 ? 1 5CM A C5 1 HETATM 6 C C5A . 5CM A 1 1 ? 11.043 8.913 -3.147 1.00 5.20 ? 1 5CM A C5A 1 HETATM 7 C C6 . 5CM A 1 1 ? 10.954 11.423 -3.071 1.00 5.20 ? 1 5CM A C6 1 HETATM 8 O O2 . 5CM A 1 1 ? 13.361 13.961 -3.516 1.00 6.50 ? 1 5CM A O2 1 HETATM 9 N N4 . 5CM A 1 1 ? 13.932 9.430 -3.655 1.00 5.50 ? 1 5CM A N4 1 HETATM 10 C "C1'" . 5CM A 1 1 ? 10.712 13.940 -3.008 1.00 6.60 ? 1 5CM A "C1'" 1 HETATM 11 C "C2'" . 5CM A 1 1 ? 10.098 14.342 -4.411 1.00 8.10 ? 1 5CM A "C2'" 1 HETATM 12 C "C3'" . 5CM A 1 1 ? 8.953 15.203 -3.894 1.00 9.40 ? 1 5CM A "C3'" 1 HETATM 13 C "C4'" . 5CM A 1 1 ? 8.505 14.497 -2.563 1.00 7.70 ? 1 5CM A "C4'" 1 HETATM 14 O "O4'" . 5CM A 1 1 ? 9.628 13.706 -2.194 1.00 6.40 ? 1 5CM A "O4'" 1 HETATM 15 O "O3'" . 5CM A 1 1 ? 9.516 16.502 -3.565 1.00 12.00 ? 1 5CM A "O3'" 1 HETATM 16 C "C5'" . 5CM A 1 1 ? 7.295 13.672 -2.594 1.00 8.70 ? 1 5CM A "C5'" 1 HETATM 17 O "O5'" . 5CM A 1 1 ? 7.454 12.747 -3.799 1.00 10.50 ? 1 5CM A "O5'" 1 ATOM 18 P P . DG A 1 2 ? 8.670 17.844 -3.844 1.00 13.90 ? 2 DG A P 1 ATOM 19 O OP1 . DG A 1 2 ? 7.719 17.607 -4.901 1.00 15.40 ? 2 DG A OP1 1 ATOM 20 O OP2 . DG A 1 2 ? 9.571 18.851 -3.601 1.00 15.90 ? 2 DG A OP2 1 ATOM 21 O "O5'" . DG A 1 2 ? 7.583 17.878 -2.635 1.00 12.10 ? 2 DG A "O5'" 1 ATOM 22 C "C5'" . DG A 1 2 ? 8.006 18.103 -1.416 1.00 11.00 ? 2 DG A "C5'" 1 ATOM 23 C "C4'" . DG A 1 2 ? 6.818 17.935 -0.454 1.00 10.40 ? 2 DG A "C4'" 1 ATOM 24 O "O4'" . DG A 1 2 ? 6.254 16.624 -0.495 1.00 9.50 ? 2 DG A "O4'" 1 ATOM 25 C "C3'" . DG A 1 2 ? 7.286 18.078 1.088 1.00 10.90 ? 2 DG A "C3'" 1 ATOM 26 O "O3'" . DG A 1 2 ? 7.185 19.533 1.286 1.00 12.90 ? 2 DG A "O3'" 1 ATOM 27 C "C2'" . DG A 1 2 ? 6.430 17.239 1.821 1.00 9.50 ? 2 DG A "C2'" 1 ATOM 28 C "C1'" . DG A 1 2 ? 5.925 16.171 0.773 1.00 9.50 ? 2 DG A "C1'" 1 ATOM 29 N N9 . DG A 1 2 ? 6.528 14.868 0.868 1.00 8.90 ? 2 DG A N9 1 ATOM 30 C C8 . DG A 1 2 ? 5.801 13.706 0.904 1.00 8.80 ? 2 DG A C8 1 ATOM 31 N N7 . DG A 1 2 ? 6.559 12.616 0.980 1.00 8.80 ? 2 DG A N7 1 ATOM 32 C C5 . DG A 1 2 ? 7.820 13.106 0.940 1.00 9.00 ? 2 DG A C5 1 ATOM 33 C C6 . DG A 1 2 ? 9.138 12.482 0.895 1.00 8.40 ? 2 DG A C6 1 ATOM 34 O O6 . DG A 1 2 ? 9.329 11.223 0.940 1.00 8.80 ? 2 DG A O6 1 ATOM 35 N N1 . DG A 1 2 ? 10.200 13.301 0.841 1.00 7.80 ? 2 DG A N1 1 ATOM 36 C C2 . DG A 1 2 ? 10.067 14.619 0.728 1.00 7.80 ? 2 DG A C2 1 ATOM 37 N N2 . DG A 1 2 ? 11.070 15.373 0.629 1.00 8.00 ? 2 DG A N2 1 ATOM 38 N N3 . DG A 1 2 ? 8.887 15.300 0.769 1.00 8.20 ? 2 DG A N3 1 ATOM 39 C C4 . DG A 1 2 ? 7.837 14.479 0.854 1.00 8.70 ? 2 DG A C4 1 ATOM 40 P P . DT A 1 3 ? 8.495 20.415 1.708 1.00 14.60 ? 3 DT A P 1 ATOM 41 O OP1 . DT A 1 3 ? 7.956 21.745 2.077 1.00 15.90 ? 3 DT A OP1 1 ATOM 42 O OP2 . DT A 1 3 ? 9.582 20.449 0.688 1.00 14.80 ? 3 DT A OP2 1 ATOM 43 O "O5'" . DT A 1 3 ? 8.831 19.713 3.102 1.00 10.60 ? 3 DT A "O5'" 1 ATOM 44 C "C5'" . DT A 1 3 ? 9.399 20.434 4.244 1.00 11.00 ? 3 DT A "C5'" 1 ATOM 45 C "C4'" . DT A 1 3 ? 10.753 19.877 4.505 1.00 10.50 ? 3 DT A "C4'" 1 ATOM 46 O "O4'" . DT A 1 3 ? 10.438 18.504 5.040 1.00 8.50 ? 3 DT A "O4'" 1 ATOM 47 C "C3'" . DT A 1 3 ? 11.625 19.603 3.233 1.00 9.70 ? 3 DT A "C3'" 1 ATOM 48 O "O3'" . DT A 1 3 ? 12.913 19.746 3.646 1.00 12.00 ? 3 DT A "O3'" 1 ATOM 49 C "C2'" . DT A 1 3 ? 11.527 18.045 3.012 1.00 7.90 ? 3 DT A "C2'" 1 ATOM 50 C "C1'" . DT A 1 3 ? 11.258 17.540 4.429 1.00 8.30 ? 3 DT A "C1'" 1 ATOM 51 N N1 . DT A 1 3 ? 10.458 16.247 4.429 1.00 7.50 ? 3 DT A N1 1 ATOM 52 C C2 . DT A 1 3 ? 11.260 15.145 4.226 1.00 7.70 ? 3 DT A C2 1 ATOM 53 O O2 . DT A 1 3 ? 12.438 15.166 4.073 1.00 8.00 ? 3 DT A O2 1 ATOM 54 N N3 . DT A 1 3 ? 10.605 13.928 4.150 1.00 8.00 ? 3 DT A N3 1 ATOM 55 C C4 . DT A 1 3 ? 9.218 13.830 4.298 1.00 7.80 ? 3 DT A C4 1 ATOM 56 O O4 . DT A 1 3 ? 8.686 12.680 4.208 1.00 8.00 ? 3 DT A O4 1 ATOM 57 C C5 . DT A 1 3 ? 8.419 14.993 4.527 1.00 7.30 ? 3 DT A C5 1 ATOM 58 C C7 . DT A 1 3 ? 6.933 14.911 4.689 1.00 7.80 ? 3 DT A C7 1 ATOM 59 C C6 . DT A 1 3 ? 9.088 16.183 4.532 1.00 7.40 ? 3 DT A C6 1 ATOM 60 P P . DA A 1 4 ? 13.792 21.112 3.637 1.00 13.60 ? 4 DA A P 1 ATOM 61 O OP1 . DA A 1 4 ? 13.339 21.846 2.500 1.00 15.10 ? 4 DA A OP1 1 ATOM 62 O OP2 . DA A 1 4 ? 15.134 20.768 4.033 1.00 14.80 ? 4 DA A OP2 1 ATOM 63 O "O5'" . DA A 1 4 ? 13.155 22.043 4.874 1.00 12.10 ? 4 DA A "O5'" 1 ATOM 64 C "C5'" . DA A 1 4 ? 13.535 21.593 6.204 1.00 10.40 ? 4 DA A "C5'" 1 ATOM 65 C "C4'" . DA A 1 4 ? 12.648 22.597 7.059 1.00 8.30 ? 4 DA A "C4'" 1 ATOM 66 O "O4'" . DA A 1 4 ? 11.267 22.336 6.811 1.00 8.50 ? 4 DA A "O4'" 1 ATOM 67 C "C3'" . DA A 1 4 ? 12.779 22.247 8.574 1.00 7.40 ? 4 DA A "C3'" 1 ATOM 68 O "O3'" . DA A 1 4 ? 13.794 23.230 8.920 1.00 9.30 ? 4 DA A "O3'" 1 ATOM 69 C "C2'" . DA A 1 4 ? 11.484 22.515 9.095 1.00 7.40 ? 4 DA A "C2'" 1 ATOM 70 C "C1'" . DA A 1 4 ? 10.413 22.378 7.985 1.00 7.30 ? 4 DA A "C1'" 1 ATOM 71 N N9 . DA A 1 4 ? 9.607 21.176 7.994 1.00 6.70 ? 4 DA A N9 1 ATOM 72 C C8 . DA A 1 4 ? 8.321 21.176 7.783 1.00 6.60 ? 4 DA A C8 1 ATOM 73 N N7 . DA A 1 4 ? 7.762 19.968 7.774 1.00 7.20 ? 4 DA A N7 1 ATOM 74 C C5 . DA A 1 4 ? 8.830 19.140 7.953 1.00 6.40 ? 4 DA A C5 1 ATOM 75 C C6 . DA A 1 4 ? 8.935 17.729 7.958 1.00 6.50 ? 4 DA A C6 1 ATOM 76 N N6 . DA A 1 4 ? 7.895 16.889 7.832 1.00 6.80 ? 4 DA A N6 1 ATOM 77 N N1 . DA A 1 4 ? 10.185 17.214 8.106 1.00 6.50 ? 4 DA A N1 1 ATOM 78 C C2 . DA A 1 4 ? 11.230 18.027 8.165 1.00 7.10 ? 4 DA A C2 1 ATOM 79 N N3 . DA A 1 4 ? 11.221 19.360 8.165 1.00 6.10 ? 4 DA A N3 1 ATOM 80 C C4 . DA A 1 4 ? 9.978 19.822 8.048 1.00 6.50 ? 4 DA A C4 1 HETATM 81 N N1 . 5CM A 1 5 ? 12.302 18.434 11.811 1.00 5.60 ? 5 5CM A N1 1 HETATM 82 C C2 . 5CM A 1 5 ? 11.749 17.129 11.663 1.00 5.50 ? 5 5CM A C2 1 HETATM 83 N N3 . 5CM A 1 5 ? 10.424 17.032 11.501 1.00 5.10 ? 5 5CM A N3 1 HETATM 84 C C4 . 5CM A 1 5 ? 9.596 18.142 11.487 1.00 5.00 ? 5 5CM A C4 1 HETATM 85 C C5 . 5CM A 1 5 ? 10.155 19.436 11.681 1.00 4.20 ? 5 5CM A C5 1 HETATM 86 C C5A . 5CM A 1 5 ? 9.292 20.647 11.726 1.00 5.20 ? 5 5CM A C5A 1 HETATM 87 C C6 . 5CM A 1 5 ? 11.498 19.560 11.815 1.00 4.50 ? 5 5CM A C6 1 HETATM 88 O O2 . 5CM A 1 5 ? 12.528 16.171 11.658 1.00 6.20 ? 5 5CM A O2 1 HETATM 89 N N4 . 5CM A 1 5 ? 8.280 17.908 11.379 1.00 5.00 ? 5 5CM A N4 1 HETATM 90 C "C1'" . 5CM A 1 5 ? 13.785 18.486 11.937 1.00 5.30 ? 5 5CM A "C1'" 1 HETATM 91 C "C2'" . 5CM A 1 5 ? 14.430 18.584 10.534 1.00 6.30 ? 5 5CM A "C2'" 1 HETATM 92 C "C3'" . 5CM A 1 5 ? 15.732 19.283 10.925 1.00 7.40 ? 5 5CM A "C3'" 1 HETATM 93 C "C4'" . 5CM A 1 5 ? 15.413 20.102 12.211 1.00 6.90 ? 5 5CM A "C4'" 1 HETATM 94 O "O4'" . 5CM A 1 5 ? 14.101 19.743 12.548 1.00 5.40 ? 5 5CM A "O4'" 1 HETATM 95 O "O3'" . 5CM A 1 5 ? 16.595 18.200 11.420 1.00 8.90 ? 5 5CM A "O3'" 1 HETATM 96 C "C5'" . 5CM A 1 5 ? 15.419 21.617 11.995 1.00 7.10 ? 5 5CM A "C5'" 1 HETATM 97 O "O5'" . 5CM A 1 5 ? 14.769 21.794 10.714 1.00 9.00 ? 5 5CM A "O5'" 1 HETATM 98 P P . 5CM A 1 5 ? 14.416 23.355 10.381 1.00 12.20 ? 5 5CM A P 1 HETATM 99 O OP1 . 5CM A 1 5 ? 13.345 23.693 11.307 1.00 14.20 ? 5 5CM A OP1 1 HETATM 100 O OP2 . 5CM A 1 5 ? 15.582 24.101 10.215 1.00 13.80 ? 5 5CM A OP2 1 ATOM 101 P P . DG A 1 6 ? 18.166 18.252 11.388 1.00 10.00 ? 6 DG A P 1 ATOM 102 O OP1 . DG A 1 6 ? 18.549 18.809 10.156 1.00 9.50 ? 6 DG A OP1 1 ATOM 103 O OP2 . DG A 1 6 ? 18.553 16.965 11.968 1.00 10.60 ? 6 DG A OP2 1 ATOM 104 O "O5'" . DG A 1 6 ? 18.687 19.414 12.499 1.00 7.20 ? 6 DG A "O5'" 1 ATOM 105 C "C5'" . DG A 1 6 ? 18.766 19.058 13.794 1.00 6.30 ? 6 DG A "C5'" 1 ATOM 106 C "C4'" . DG A 1 6 ? 19.226 20.279 14.509 1.00 6.50 ? 6 DG A "C4'" 1 ATOM 107 O "O4'" . DG A 1 6 ? 18.257 21.286 14.396 1.00 5.90 ? 6 DG A "O4'" 1 ATOM 108 C "C3'" . DG A 1 6 ? 19.491 20.099 16.051 1.00 6.90 ? 6 DG A "C3'" 1 ATOM 109 O "O3'" . DG A 1 6 ? 20.564 20.972 16.478 1.00 8.60 ? 6 DG A "O3'" 1 ATOM 110 C "C2'" . DG A 1 6 ? 18.275 20.632 16.748 1.00 6.80 ? 6 DG A "C2'" 1 ATOM 111 C "C1'" . DG A 1 6 ? 17.760 21.663 15.691 1.00 6.10 ? 6 DG A "C1'" 1 ATOM 112 N N9 . DG A 1 6 ? 16.336 21.812 15.660 1.00 6.60 ? 6 DG A N9 1 ATOM 113 C C8 . DG A 1 6 ? 15.650 22.972 15.678 1.00 5.20 ? 6 DG A C8 1 ATOM 114 N N7 . DG A 1 6 ? 14.380 22.804 15.579 1.00 6.20 ? 6 DG A N7 1 ATOM 115 C C5 . DG A 1 6 ? 14.221 21.401 15.538 1.00 5.60 ? 6 DG A C5 1 ATOM 116 C C6 . DG A 1 6 ? 13.053 20.552 15.543 1.00 6.20 ? 6 DG A C6 1 ATOM 117 O O6 . DG A 1 6 ? 11.878 20.991 15.430 1.00 6.40 ? 6 DG A O6 1 ATOM 118 N N1 . DG A 1 6 ? 13.287 19.229 15.475 1.00 5.00 ? 6 DG A N1 1 ATOM 119 C C2 . DG A 1 6 ? 14.561 18.766 15.480 1.00 4.90 ? 6 DG A C2 1 ATOM 120 N N2 . DG A 1 6 ? 14.675 17.467 15.453 1.00 5.90 ? 6 DG A N2 1 ATOM 121 N N3 . DG A 1 6 ? 15.677 19.451 15.552 1.00 4.60 ? 6 DG A N3 1 ATOM 122 C C4 . DG A 1 6 ? 15.412 20.787 15.592 1.00 5.90 ? 6 DG A C4 1 HETATM 123 N N1 . 5CM B 1 1 ? 10.078 15.328 14.783 1.00 5.20 ? 7 5CM B N1 1 HETATM 124 C C2 . 5CM B 1 1 ? 11.160 16.149 14.967 1.00 5.40 ? 7 5CM B C2 1 HETATM 125 N N3 . 5CM B 1 1 ? 10.929 17.531 15.053 1.00 5.50 ? 7 5CM B N3 1 HETATM 126 C C4 . 5CM B 1 1 ? 9.711 18.057 15.003 1.00 4.50 ? 7 5CM B C4 1 HETATM 127 C C5 . 5CM B 1 1 ? 8.584 17.190 14.819 1.00 5.00 ? 7 5CM B C5 1 HETATM 128 C C5A . 5CM B 1 1 ? 7.182 17.768 14.688 1.00 5.80 ? 7 5CM B C5A 1 HETATM 129 C C6 . 5CM B 1 1 ? 8.830 15.860 14.738 1.00 5.50 ? 7 5CM B C6 1 HETATM 130 O O2 . 5CM B 1 1 ? 12.317 15.766 15.071 1.00 5.10 ? 7 5CM B O2 1 HETATM 131 N N4 . 5CM B 1 1 ? 9.584 19.384 15.075 1.00 4.30 ? 7 5CM B N4 1 HETATM 132 C "C1'" . 5CM B 1 1 ? 10.377 13.858 14.765 1.00 6.60 ? 7 5CM B "C1'" 1 HETATM 133 C "C2'" . 5CM B 1 1 ? 10.144 13.328 16.190 1.00 6.60 ? 7 5CM B "C2'" 1 HETATM 134 C "C3'" . 5CM B 1 1 ? 9.908 11.849 15.803 1.00 7.30 ? 7 5CM B "C3'" 1 HETATM 135 C "C4'" . 5CM B 1 1 ? 9.131 11.977 14.486 1.00 7.10 ? 7 5CM B "C4'" 1 HETATM 136 O "O4'" . 5CM B 1 1 ? 9.365 13.322 14.005 1.00 6.80 ? 7 5CM B "O4'" 1 HETATM 137 O "O3'" . 5CM B 1 1 ? 11.104 11.244 15.520 1.00 8.70 ? 7 5CM B "O3'" 1 HETATM 138 C "C5'" . 5CM B 1 1 ? 7.612 11.956 14.500 1.00 10.40 ? 7 5CM B "C5'" 1 HETATM 139 O "O5'" . 5CM B 1 1 ? 7.014 12.613 15.606 1.00 12.90 ? 7 5CM B "O5'" 1 ATOM 140 P P . DG B 1 2 ? 11.432 9.646 15.772 1.00 10.10 ? 8 DG B P 1 ATOM 141 O OP1 . DG B 1 2 ? 10.615 9.260 16.797 1.00 10.40 ? 8 DG B OP1 1 ATOM 142 O OP2 . DG B 1 2 ? 12.831 9.537 15.655 1.00 21.10 ? 8 DG B OP2 1 ATOM 143 O "O5'" . DG B 1 2 ? 10.710 8.977 14.450 1.00 7.60 ? 8 DG B "O5'" 1 ATOM 144 C "C5'" . DG B 1 2 ? 11.308 9.309 13.232 1.00 7.40 ? 8 DG B "C5'" 1 ATOM 145 C "C4'" . DG B 1 2 ? 10.486 8.624 12.157 1.00 6.50 ? 8 DG B "C4'" 1 ATOM 146 O "O4'" . DG B 1 2 ? 9.168 9.120 12.144 1.00 6.20 ? 8 DG B "O4'" 1 ATOM 147 C "C3'" . DG B 1 2 ? 10.986 8.883 10.736 1.00 5.70 ? 8 DG B "C3'" 1 ATOM 148 O "O3'" . DG B 1 2 ? 11.747 7.723 10.282 1.00 7.00 ? 8 DG B "O3'" 1 ATOM 149 C "C2'" . DG B 1 2 ? 9.795 9.080 9.851 1.00 5.50 ? 8 DG B "C2'" 1 ATOM 150 C "C1'" . DG B 1 2 ? 8.627 9.299 10.844 1.00 5.80 ? 8 DG B "C1'" 1 ATOM 151 N N9 . DG B 1 2 ? 8.024 10.611 10.844 1.00 6.10 ? 8 DG B N9 1 ATOM 152 C C8 . DG B 1 2 ? 6.727 10.921 10.835 1.00 7.30 ? 8 DG B C8 1 ATOM 153 N N7 . DG B 1 2 ? 6.462 12.233 10.916 1.00 7.20 ? 8 DG B N7 1 ATOM 154 C C5 . DG B 1 2 ? 7.762 12.741 10.934 1.00 6.40 ? 8 DG B C5 1 ATOM 155 C C6 . DG B 1 2 ? 8.231 14.098 11.047 1.00 6.30 ? 8 DG B C6 1 ATOM 156 O O6 . DG B 1 2 ? 7.519 15.124 11.146 1.00 6.70 ? 8 DG B O6 1 ATOM 157 N N1 . DG B 1 2 ? 9.559 14.314 11.042 1.00 5.40 ? 8 DG B N1 1 ATOM 158 C C2 . DG B 1 2 ? 10.381 13.258 11.110 1.00 6.20 ? 8 DG B C2 1 ATOM 159 N N2 . DG B 1 2 ? 11.618 13.505 11.173 1.00 5.80 ? 8 DG B N2 1 ATOM 160 N N3 . DG B 1 2 ? 10.083 11.956 10.984 1.00 5.00 ? 8 DG B N3 1 ATOM 161 C C4 . DG B 1 2 ? 8.751 11.816 10.921 1.00 6.10 ? 8 DG B C4 1 ATOM 162 P P . DT B 1 3 ? 13.284 7.912 9.878 1.00 7.40 ? 9 DT B P 1 ATOM 163 O OP1 . DT B 1 3 ? 13.744 6.585 9.558 1.00 8.40 ? 9 DT B OP1 1 ATOM 164 O OP2 . DT B 1 3 ? 14.022 8.612 10.826 1.00 9.90 ? 9 DT B OP2 1 ATOM 165 O "O5'" . DT B 1 3 ? 13.243 8.743 8.506 1.00 7.60 ? 9 DT B "O5'" 1 ATOM 166 C "C5'" . DT B 1 3 ? 14.058 8.642 7.427 1.00 6.90 ? 9 DT B "C5'" 1 ATOM 167 C "C4'" . DT B 1 3 ? 14.593 10.118 7.135 1.00 5.50 ? 9 DT B "C4'" 1 ATOM 168 O "O4'" . DT B 1 3 ? 13.545 10.927 6.654 1.00 6.50 ? 9 DT B "O4'" 1 ATOM 169 C "C3'" . DT B 1 3 ? 15.202 10.918 8.336 1.00 7.10 ? 9 DT B "C3'" 1 ATOM 170 O "O3'" . DT B 1 3 ? 16.268 11.709 7.904 1.00 6.90 ? 9 DT B "O3'" 1 ATOM 171 C "C2'" . DT B 1 3 ? 14.007 11.828 8.754 1.00 5.80 ? 9 DT B "C2'" 1 ATOM 172 C "C1'" . DT B 1 3 ? 13.470 12.148 7.315 1.00 5.90 ? 9 DT B "C1'" 1 ATOM 173 N N1 . DT B 1 3 ? 12.016 12.580 7.373 1.00 5.40 ? 9 DT B N1 1 ATOM 174 C C2 . DT B 1 3 ? 11.803 13.888 7.625 1.00 5.90 ? 9 DT B C2 1 ATOM 175 O O2 . DT B 1 3 ? 12.766 14.643 7.702 1.00 7.50 ? 9 DT B O2 1 ATOM 176 N N3 . DT B 1 3 ? 10.529 14.363 7.711 1.00 6.00 ? 9 DT B N3 1 ATOM 177 C C4 . DT B 1 3 ? 9.422 13.526 7.634 1.00 5.90 ? 9 DT B C4 1 ATOM 178 O O4 . DT B 1 3 ? 8.334 14.083 7.756 1.00 6.10 ? 9 DT B O4 1 ATOM 179 C C5 . DT B 1 3 ? 9.682 12.093 7.409 1.00 5.50 ? 9 DT B C5 1 ATOM 180 C C7 . DT B 1 3 ? 8.522 11.128 7.266 1.00 6.40 ? 9 DT B C7 1 ATOM 181 C C6 . DT B 1 3 ? 10.902 11.716 7.288 1.00 5.40 ? 9 DT B C6 1 ATOM 182 P P . DA B 1 4 ? 17.760 11.216 7.886 1.00 7.10 ? 10 DA B P 1 ATOM 183 O OP1 . DA B 1 4 ? 18.082 10.471 9.037 1.00 7.70 ? 10 DA B OP1 1 ATOM 184 O OP2 . DA B 1 4 ? 18.551 12.437 7.585 1.00 8.50 ? 10 DA B OP2 1 ATOM 185 O "O5'" . DA B 1 4 ? 17.946 10.224 6.623 1.00 7.30 ? 10 DA B "O5'" 1 ATOM 186 C "C5'" . DA B 1 4 ? 17.894 10.800 5.269 1.00 8.40 ? 10 DA B "C5'" 1 ATOM 187 C "C4'" . DA B 1 4 ? 17.856 9.512 4.429 1.00 9.80 ? 10 DA B "C4'" 1 ATOM 188 O "O4'" . DA B 1 4 ? 16.744 8.782 4.635 1.00 10.40 ? 10 DA B "O4'" 1 ATOM 189 C "C3'" . DA B 1 4 ? 17.770 9.905 2.913 1.00 11.70 ? 10 DA B "C3'" 1 ATOM 190 O "O3'" . DA B 1 4 ? 19.112 9.625 2.468 1.00 13.50 ? 10 DA B "O3'" 1 ATOM 191 C "C2'" . DA B 1 4 ? 16.671 9.035 2.351 1.00 11.30 ? 10 DA B "C2'" 1 ATOM 192 C "C1'" . DA B 1 4 ? 15.994 8.298 3.516 1.00 10.00 ? 10 DA B "C1'" 1 ATOM 193 N N9 . DA B 1 4 ? 14.606 8.530 3.669 1.00 8.70 ? 10 DA B N9 1 ATOM 194 C C8 . DA B 1 4 ? 13.630 7.659 3.858 1.00 9.30 ? 10 DA B C8 1 ATOM 195 N N7 . DA B 1 4 ? 12.390 8.037 4.019 1.00 8.60 ? 10 DA B N7 1 ATOM 196 C C5 . DA B 1 4 ? 12.607 9.388 3.844 1.00 8.00 ? 10 DA B C5 1 ATOM 197 C C6 . DA B 1 4 ? 11.641 10.425 3.907 1.00 7.40 ? 10 DA B C6 1 ATOM 198 N N6 . DA B 1 4 ? 10.316 10.243 4.132 1.00 8.20 ? 10 DA B N6 1 ATOM 199 N N1 . DA B 1 4 ? 12.143 11.688 3.763 1.00 7.30 ? 10 DA B N1 1 ATOM 200 C C2 . DA B 1 4 ? 13.422 11.865 3.579 1.00 7.30 ? 10 DA B C2 1 ATOM 201 N N3 . DA B 1 4 ? 14.477 10.964 3.489 1.00 7.90 ? 10 DA B N3 1 ATOM 202 C C4 . DA B 1 4 ? 13.907 9.738 3.696 1.00 8.10 ? 10 DA B C4 1 HETATM 203 N N1 . 5CM B 1 5 ? 14.948 12.266 -0.306 1.00 6.60 ? 11 5CM B N1 1 HETATM 204 C C2 . 5CM B 1 5 ? 13.757 12.860 -0.049 1.00 5.70 ? 11 5CM B C2 1 HETATM 205 N N3 . 5CM B 1 5 ? 12.696 12.047 0.157 1.00 6.40 ? 11 5CM B N3 1 HETATM 206 C C4 . 5CM B 1 5 ? 12.773 10.635 0.148 1.00 6.10 ? 11 5CM B C4 1 HETATM 207 C C5 . 5CM B 1 5 ? 14.065 10.063 -0.126 1.00 5.40 ? 11 5CM B C5 1 HETATM 208 C C5A . 5CM B 1 5 ? 14.221 8.551 -0.162 1.00 6.90 ? 11 5CM B C5A 1 HETATM 209 C C6 . 5CM B 1 5 ? 15.077 10.864 -0.360 1.00 5.70 ? 11 5CM B C6 1 HETATM 210 O O2 . 5CM B 1 5 ? 13.637 14.062 -0.009 1.00 6.70 ? 11 5CM B O2 1 HETATM 211 N N4 . 5CM B 1 5 ? 11.697 9.911 0.427 1.00 6.00 ? 11 5CM B N4 1 HETATM 212 C "C1'" . 5CM B 1 5 ? 16.089 13.188 -0.517 1.00 7.80 ? 11 5CM B "C1'" 1 HETATM 213 C "C2'" . 5CM B 1 5 ? 16.637 13.611 0.908 1.00 9.80 ? 11 5CM B "C2'" 1 HETATM 214 C "C3'" . 5CM B 1 5 ? 18.071 14.037 0.477 1.00 11.00 ? 11 5CM B "C3'" 1 HETATM 215 C "C4'" . 5CM B 1 5 ? 18.449 13.143 -0.728 1.00 10.30 ? 11 5CM B "C4'" 1 HETATM 216 O "O4'" . 5CM B 1 5 ? 17.194 12.534 -1.151 1.00 9.80 ? 11 5CM B "O4'" 1 HETATM 217 O "O3'" . 5CM B 1 5 ? 18.114 15.364 -0.022 1.00 13.00 ? 11 5CM B "O3'" 1 HETATM 218 C "C5'" . 5CM B 1 5 ? 19.576 12.056 -0.580 1.00 10.90 ? 11 5CM B "C5'" 1 HETATM 219 O "O5'" . 5CM B 1 5 ? 19.040 11.280 0.441 1.00 13.20 ? 11 5CM B "O5'" 1 HETATM 220 P P . 5CM B 1 5 ? 19.936 10.660 1.708 1.00 13.50 ? 11 5CM B P 1 HETATM 221 O OP1 . 5CM B 1 5 ? 20.960 9.938 0.940 1.00 15.30 ? 11 5CM B OP1 1 HETATM 222 O OP2 . 5CM B 1 5 ? 20.202 11.825 2.572 1.00 14.90 ? 11 5CM B OP2 1 ATOM 223 P P . DG B 1 6 ? 19.316 16.368 0.184 1.00 15.50 ? 12 DG B P 1 ATOM 224 O OP1 . DG B 1 6 ? 19.765 16.225 1.511 1.00 15.70 ? 12 DG B OP1 1 ATOM 225 O OP2 . DG B 1 6 ? 18.786 17.655 -0.373 1.00 17.00 ? 12 DG B OP2 1 ATOM 226 O "O5'" . DG B 1 6 ? 20.593 15.927 -0.742 1.00 15.10 ? 12 DG B "O5'" 1 ATOM 227 C "C5'" . DG B 1 6 ? 20.287 16.134 -2.127 1.00 14.20 ? 12 DG B "C5'" 1 ATOM 228 C "C4'" . DG B 1 6 ? 21.490 15.568 -2.859 1.00 12.60 ? 12 DG B "C4'" 1 ATOM 229 O "O4'" . DG B 1 6 ? 21.449 14.113 -2.832 1.00 10.70 ? 12 DG B "O4'" 1 ATOM 230 C "C3'" . DG B 1 6 ? 21.569 16.052 -4.343 1.00 13.60 ? 12 DG B "C3'" 1 ATOM 231 O "O3'" . DG B 1 6 ? 23.054 16.015 -4.626 1.00 16.50 ? 12 DG B "O3'" 1 ATOM 232 C "C2'" . DG B 1 6 ? 20.894 14.929 -4.968 1.00 10.90 ? 12 DG B "C2'" 1 ATOM 233 C "C1'" . DG B 1 6 ? 21.374 13.700 -4.258 1.00 10.50 ? 12 DG B "C1'" 1 ATOM 234 N N9 . DG B 1 6 ? 20.482 12.562 -4.226 1.00 10.40 ? 12 DG B N9 1 ATOM 235 C C8 . DG B 1 6 ? 20.794 11.256 -4.186 1.00 9.30 ? 12 DG B C8 1 ATOM 236 N N7 . DG B 1 6 ? 19.733 10.471 -4.105 1.00 9.90 ? 12 DG B N7 1 ATOM 237 C C5 . DG B 1 6 ? 18.678 11.326 -4.055 1.00 8.90 ? 12 DG B C5 1 ATOM 238 C C6 . DG B 1 6 ? 17.285 11.110 -4.006 1.00 8.70 ? 12 DG B C6 1 ATOM 239 O O6 . DG B 1 6 ? 16.705 9.954 -3.956 1.00 8.10 ? 12 DG B O6 1 ATOM 240 N N1 . DG B 1 6 ? 16.441 12.190 -4.006 1.00 7.30 ? 12 DG B N1 1 ATOM 241 C C2 . DG B 1 6 ? 16.997 13.432 -4.064 1.00 7.90 ? 12 DG B C2 1 ATOM 242 N N2 . DG B 1 6 ? 16.196 14.387 -3.979 1.00 7.30 ? 12 DG B N2 1 ATOM 243 N N3 . DG B 1 6 ? 18.299 13.748 -4.109 1.00 8.20 ? 12 DG B N3 1 ATOM 244 C C4 . DG B 1 6 ? 19.081 12.628 -4.136 1.00 9.00 ? 12 DG B C4 1 #