data_1AGL # _entry.id 1AGL # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1AGL pdb_00001agl 10.2210/pdb1agl/pdb RCSB DDF072 ? ? WWPDB D_1000170790 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-04-29 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site 7 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1AGL _pdbx_database_status.recvd_initial_deposition_date 1997-03-25 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hu, G.G.' 1 'Shui, X.' 2 'Leng, F.' 3 'Priebe, W.' 4 'Chaires, J.B.' 5 'Williams, L.D.' 6 # _citation.id primary _citation.title 'Structure of a DNA-bisdaunomycin complex.' _citation.journal_abbrev Biochemistry _citation.journal_volume 36 _citation.page_first 5940 _citation.page_last 5946 _citation.year 1997 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9166763 _citation.pdbx_database_id_DOI 10.1021/bi9705218 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hu, G.G.' 1 ? primary 'Shui, X.' 2 ? primary 'Leng, F.' 3 ? primary 'Priebe, W.' 4 ? primary 'Chaires, J.B.' 5 ? primary 'Williams, L.D.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*AP*TP*CP*G)-3') ; 1809.217 1 ? ? ? ? 2 non-polymer syn '4-METHYLBENZYL-N-BIS[DAUNOMYCIN]' 1159.189 1 ? ? ? ? 3 water nat water 18.015 8 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DA)(DT)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGATCG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '4-METHYLBENZYL-N-BIS[DAUNOMYCIN]' BDA 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DA n 1 4 DT n 1 5 DC n 1 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BDA non-polymer . '4-METHYLBENZYL-N-BIS[DAUNOMYCIN]' WP631 'C62 H66 N2 O20 2' 1159.189 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BDA 1 7 7 BDA BDA A . C 3 HOH 1 8 8 HOH HOH A . C 3 HOH 2 9 9 HOH HOH A . C 3 HOH 3 10 10 HOH HOH A . C 3 HOH 4 11 11 HOH HOH A . C 3 HOH 5 12 12 HOH HOH A . C 3 HOH 6 13 13 HOH HOH A . C 3 HOH 7 14 14 HOH HOH A . C 3 HOH 8 15 15 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR refinement . ? 1 ADSC 'data collection' . ? 2 # _cell.entry_id 1AGL _cell.length_a 28.270 _cell.length_b 28.270 _cell.length_c 53.770 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1AGL _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # _exptl.entry_id 1AGL _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 56.74 _exptl_crystal.density_Matthews 2.84 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details 'ROOM TEMPERATURE' _exptl_crystal_grow.pH 6.50 _exptl_crystal_grow.pdbx_details 'pH 6.50, VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'NA CACODYLATE' ? ? ? 1 4 1 MGCL2 ? ? ? 1 5 1 SPERMINE_HCL ? ? ? 1 6 2 WATER ? ? ? 1 7 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 294.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type SDMS _diffrn_detector.pdbx_collection_date 1996-05-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1AGL _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 12.000 _reflns.d_resolution_high 1.800 _reflns.number_obs 2058 _reflns.number_all 11192 _reflns.percent_possible_obs 93.000 _reflns.pdbx_Rmerge_I_obs 0.0700000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 5.5000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.760 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1AGL _refine.ls_number_reflns_obs 1061 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.000 _refine.ls_d_res_high 2.200 _refine.ls_percent_reflns_obs 97.400 _refine.ls_R_factor_obs 0.1990000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1990000 _refine.ls_R_factor_R_free 0.3140000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.000 _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model DDF045 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 120 _refine_hist.pdbx_number_atoms_ligand 42 _refine_hist.number_atoms_solvent 8 _refine_hist.number_atoms_total 170 _refine_hist.d_res_high 2.200 _refine_hist.d_res_low 10.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.014 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 3.10 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 2.20 _refine_ls_shell.d_res_low 2.30 _refine_ls_shell.number_reflns_R_work 111 _refine_ls_shell.R_factor_R_work 0.2850000 _refine_ls_shell.percent_reflns_obs 82.80 _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _pdbx_xplor_file.serial_no 1 _pdbx_xplor_file.param_file PARDNA.PRO _pdbx_xplor_file.topol_file TOPDNA.PRO _pdbx_xplor_file.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1AGL _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1AGL _struct.title 'STRUCTURE OF A DNA-BISDAUNOMYCIN COMPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1AGL _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1AGL _struct_ref.pdbx_db_accession 1AGL _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1AGL _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1AGL _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 6 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 28.2700000000 -1.0000000000 0.0000000000 0.0000000000 28.2700000000 0.0000000000 0.0000000000 -1.0000000000 26.8850000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? B BDA . C9A ? ? ? 1_555 B BDA . C9A ? ? A BDA 7 A BDA 7 8_665 ? ? ? ? ? ? ? 1.355 ? ? covale2 covale none ? B BDA . C9B ? ? ? 1_555 B BDA . C9B ? ? A BDA 7 A BDA 7 8_665 ? ? ? ? ? ? ? 1.360 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 A DT 4 N3 ? ? A DA 3 A DT 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 3 A DT 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 3 N1 ? ? A DT 4 A DA 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 3 N6 ? ? A DT 4 A DA 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A BDA 7 ? 8 'BINDING SITE FOR RESIDUE BDA A 7' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DC A 1 ? DC A 1 . ? 8_665 ? 2 AC1 8 DG A 2 ? DG A 2 . ? 8_665 ? 3 AC1 8 DA A 3 ? DA A 3 . ? 8_665 ? 4 AC1 8 DT A 4 ? DT A 4 . ? 8_665 ? 5 AC1 8 DT A 4 ? DT A 4 . ? 1_555 ? 6 AC1 8 DC A 5 ? DC A 5 . ? 1_555 ? 7 AC1 8 DG A 6 ? DG A 6 . ? 1_555 ? 8 AC1 8 HOH C . ? HOH A 11 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 122.73 118.90 3.83 0.60 N 2 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.45 108.30 2.15 0.30 N 3 1 N3 A DT 4 ? ? C2 A DT 4 ? ? O2 A DT 4 ? ? 117.83 122.30 -4.47 0.60 N 4 1 C6 A DT 4 ? ? C5 A DT 4 ? ? C7 A DT 4 ? ? 118.63 122.90 -4.27 0.60 N 5 1 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 123.24 118.90 4.34 0.60 N 6 1 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 117.64 121.90 -4.26 0.70 N # _struct_site_keywords.site_id 1 _struct_site_keywords.text BIS-INTERCALATION # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BDA C1 C Y N 1 BDA C2 C Y N 2 BDA C3 C Y N 3 BDA C4 C Y N 4 BDA O4 O N N 5 BDA C5 C Y N 6 BDA C6 C N N 7 BDA O6 O N N 8 BDA C7 C Y N 9 BDA C8 C Y N 10 BDA O8 O N N 11 BDA C9 C Y N 12 BDA C10 C N S 13 BDA O10 O N N 14 BDA C11 C N N 15 BDA C12 C N S 16 BDA O12 O N N 17 BDA C13 C N N 18 BDA O13 O N N 19 BDA C14 C N N 20 BDA C15 C N N 21 BDA C16 C Y N 22 BDA C17 C Y N 23 BDA O17 O N N 24 BDA C18 C Y N 25 BDA C19 C N N 26 BDA O19 O N N 27 BDA C20 C Y N 28 BDA C21 C N N 29 BDA "C1'" C N R 30 BDA "C2'" C N N 31 BDA "C3'" C N S 32 BDA "N3'" N N N 33 BDA "C4'" C N S 34 BDA "O4'" O N N 35 BDA "C5'" C N S 36 BDA "O5'" O N N 37 BDA "C6'" C N N 38 BDA "C7'" C N N 39 BDA "C8'" C Y N 40 BDA C9A C Y N 41 BDA C9B C Y N 42 BDA C1B C Y N 43 BDA C2B C Y N 44 BDA C3B C Y N 45 BDA C4B C Y N 46 BDA O4B O N N 47 BDA C5B C Y N 48 BDA C6B C N N 49 BDA "O6'" O N N 50 BDA C7B C Y N 51 BDA C8B C Y N 52 BDA "O8'" O N N 53 BDA "C9'" C Y N 54 BDA "CA'" C N S 55 BDA "OA'" O N N 56 BDA "CB'" C N N 57 BDA "CC'" C N S 58 BDA "OC'" O N N 59 BDA "CD'" C N N 60 BDA "OD'" O N N 61 BDA "CE'" C N N 62 BDA "CF'" C N N 63 BDA "CG'" C Y N 64 BDA "CH'" C Y N 65 BDA "OH'" O N N 66 BDA "CI'" C Y N 67 BDA "CJ'" C N N 68 BDA "OJ'" O N N 69 BDA "CK'" C Y N 70 BDA "CL'" C N N 71 BDA C1D C N R 72 BDA C2D C N N 73 BDA C3D C N S 74 BDA N3D N N N 75 BDA C4D C N S 76 BDA O4D O N N 77 BDA C5D C N S 78 BDA O5D O N N 79 BDA C6D C N N 80 BDA C7D C N N 81 BDA C8D C Y N 82 BDA C1A C Y N 83 BDA C1C C Y N 84 BDA H1 H N N 85 BDA H2 H N N 86 BDA H3 H N N 87 BDA HO8 H N N 88 BDA H10 H N N 89 BDA H111 H N N 90 BDA H112 H N N 91 BDA H12 H N N 92 BDA H141 H N N 93 BDA H142 H N N 94 BDA H143 H N N 95 BDA H151 H N N 96 BDA H152 H N N 97 BDA H17 H N N 98 BDA H211 H N N 99 BDA H212 H N N 100 BDA H213 H N N 101 BDA H1B H N N 102 BDA "H2'1" H N N 103 BDA "H2'2" H N N 104 BDA H3B H N N 105 BDA "HN'1" H N N 106 BDA "HN'2" H N N 107 BDA "H4'" H N N 108 BDA "HO4'" H N N 109 BDA "H5'" H N N 110 BDA "H6'1" H N N 111 BDA "H6'2" H N N 112 BDA "H6'3" H N N 113 BDA "H7'1" H N N 114 BDA "H7'2" H N N 115 BDA H9A H N N 116 BDA H9B H N N 117 BDA "H1'" H N N 118 BDA "H2'" H N N 119 BDA "H3'" H N N 120 BDA "HO8'" H N N 121 BDA "H10'" H N N 122 BDA "HL'1" H N N 123 BDA "HL'2" H N N 124 BDA "H12'" H N N 125 BDA "HK'1" H N N 126 BDA "HK'2" H N N 127 BDA "HK'3" H N N 128 BDA "HJ'1" H N N 129 BDA "HJ'2" H N N 130 BDA "H17'" H N N 131 BDA "HI'1" H N N 132 BDA "HI'2" H N N 133 BDA "HI'3" H N N 134 BDA H1D H N N 135 BDA H2B H N N 136 BDA H2D H N N 137 BDA H3D H N N 138 BDA HNB H N N 139 BDA HND H N N 140 BDA H4D H N N 141 BDA HO4A H N N 142 BDA H5D H N N 143 BDA H6B H N N 144 BDA H6D H N N 145 BDA H6E H N N 146 BDA H7B H N N 147 BDA H7D H N N 148 BDA "H9A'" H N N 149 BDA "H9B'" H N N 150 DA OP3 O N N 151 DA P P N N 152 DA OP1 O N N 153 DA OP2 O N N 154 DA "O5'" O N N 155 DA "C5'" C N N 156 DA "C4'" C N R 157 DA "O4'" O N N 158 DA "C3'" C N S 159 DA "O3'" O N N 160 DA "C2'" C N N 161 DA "C1'" C N R 162 DA N9 N Y N 163 DA C8 C Y N 164 DA N7 N Y N 165 DA C5 C Y N 166 DA C6 C Y N 167 DA N6 N N N 168 DA N1 N Y N 169 DA C2 C Y N 170 DA N3 N Y N 171 DA C4 C Y N 172 DA HOP3 H N N 173 DA HOP2 H N N 174 DA "H5'" H N N 175 DA "H5''" H N N 176 DA "H4'" H N N 177 DA "H3'" H N N 178 DA "HO3'" H N N 179 DA "H2'" H N N 180 DA "H2''" H N N 181 DA "H1'" H N N 182 DA H8 H N N 183 DA H61 H N N 184 DA H62 H N N 185 DA H2 H N N 186 DC OP3 O N N 187 DC P P N N 188 DC OP1 O N N 189 DC OP2 O N N 190 DC "O5'" O N N 191 DC "C5'" C N N 192 DC "C4'" C N R 193 DC "O4'" O N N 194 DC "C3'" C N S 195 DC "O3'" O N N 196 DC "C2'" C N N 197 DC "C1'" C N R 198 DC N1 N N N 199 DC C2 C N N 200 DC O2 O N N 201 DC N3 N N N 202 DC C4 C N N 203 DC N4 N N N 204 DC C5 C N N 205 DC C6 C N N 206 DC HOP3 H N N 207 DC HOP2 H N N 208 DC "H5'" H N N 209 DC "H5''" H N N 210 DC "H4'" H N N 211 DC "H3'" H N N 212 DC "HO3'" H N N 213 DC "H2'" H N N 214 DC "H2''" H N N 215 DC "H1'" H N N 216 DC H41 H N N 217 DC H42 H N N 218 DC H5 H N N 219 DC H6 H N N 220 DG OP3 O N N 221 DG P P N N 222 DG OP1 O N N 223 DG OP2 O N N 224 DG "O5'" O N N 225 DG "C5'" C N N 226 DG "C4'" C N R 227 DG "O4'" O N N 228 DG "C3'" C N S 229 DG "O3'" O N N 230 DG "C2'" C N N 231 DG "C1'" C N R 232 DG N9 N Y N 233 DG C8 C Y N 234 DG N7 N Y N 235 DG C5 C Y N 236 DG C6 C N N 237 DG O6 O N N 238 DG N1 N N N 239 DG C2 C N N 240 DG N2 N N N 241 DG N3 N N N 242 DG C4 C Y N 243 DG HOP3 H N N 244 DG HOP2 H N N 245 DG "H5'" H N N 246 DG "H5''" H N N 247 DG "H4'" H N N 248 DG "H3'" H N N 249 DG "HO3'" H N N 250 DG "H2'" H N N 251 DG "H2''" H N N 252 DG "H1'" H N N 253 DG H8 H N N 254 DG H1 H N N 255 DG H21 H N N 256 DG H22 H N N 257 DT OP3 O N N 258 DT P P N N 259 DT OP1 O N N 260 DT OP2 O N N 261 DT "O5'" O N N 262 DT "C5'" C N N 263 DT "C4'" C N R 264 DT "O4'" O N N 265 DT "C3'" C N S 266 DT "O3'" O N N 267 DT "C2'" C N N 268 DT "C1'" C N R 269 DT N1 N N N 270 DT C2 C N N 271 DT O2 O N N 272 DT N3 N N N 273 DT C4 C N N 274 DT O4 O N N 275 DT C5 C N N 276 DT C7 C N N 277 DT C6 C N N 278 DT HOP3 H N N 279 DT HOP2 H N N 280 DT "H5'" H N N 281 DT "H5''" H N N 282 DT "H4'" H N N 283 DT "H3'" H N N 284 DT "HO3'" H N N 285 DT "H2'" H N N 286 DT "H2''" H N N 287 DT "H1'" H N N 288 DT H3 H N N 289 DT H71 H N N 290 DT H72 H N N 291 DT H73 H N N 292 DT H6 H N N 293 HOH O O N N 294 HOH H1 H N N 295 HOH H2 H N N 296 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BDA C1 C2 doub Y N 1 BDA C1 C20 sing Y N 2 BDA C1 H1 sing N N 3 BDA C2 C3 sing Y N 4 BDA C2 H2 sing N N 5 BDA C3 C4 doub Y N 6 BDA C3 H3 sing N N 7 BDA C4 O4 sing N N 8 BDA C4 C5 sing Y N 9 BDA O4 C21 sing N N 10 BDA C5 C6 sing N N 11 BDA C5 C20 doub Y N 12 BDA C6 O6 doub N N 13 BDA C6 C7 sing N N 14 BDA C7 C8 sing Y N 15 BDA C7 C18 doub Y N 16 BDA C8 O8 sing N N 17 BDA C8 C9 doub Y N 18 BDA O8 HO8 sing N N 19 BDA C9 C10 sing N N 20 BDA C9 C16 sing Y N 21 BDA C10 O10 sing N N 22 BDA C10 C11 sing N N 23 BDA C10 H10 sing N N 24 BDA O10 "C1'" sing N N 25 BDA C11 C12 sing N N 26 BDA C11 H111 sing N N 27 BDA C11 H112 sing N N 28 BDA C12 O12 sing N N 29 BDA C12 C13 sing N N 30 BDA C12 C15 sing N N 31 BDA O12 H12 sing N N 32 BDA C13 O13 doub N N 33 BDA C13 C14 sing N N 34 BDA C14 H141 sing N N 35 BDA C14 H142 sing N N 36 BDA C14 H143 sing N N 37 BDA C15 C16 sing N N 38 BDA C15 H151 sing N N 39 BDA C15 H152 sing N N 40 BDA C16 C17 doub Y N 41 BDA C17 O17 sing N N 42 BDA C17 C18 sing Y N 43 BDA O17 H17 sing N N 44 BDA C18 C19 sing N N 45 BDA C19 O19 doub N N 46 BDA C19 C20 sing N N 47 BDA C21 H211 sing N N 48 BDA C21 H212 sing N N 49 BDA C21 H213 sing N N 50 BDA "C1'" "C2'" sing N N 51 BDA "C1'" "O5'" sing N N 52 BDA "C1'" H1B sing N N 53 BDA "C2'" "C3'" sing N N 54 BDA "C2'" "H2'1" sing N N 55 BDA "C2'" "H2'2" sing N N 56 BDA "C3'" "N3'" sing N N 57 BDA "C3'" "C4'" sing N N 58 BDA "C3'" H3B sing N N 59 BDA "N3'" "C7'" sing N N 60 BDA "N3'" "HN'1" sing N N 61 BDA "N3'" "HN'2" sing N N 62 BDA "C4'" "O4'" sing N N 63 BDA "C4'" "C5'" sing N N 64 BDA "C4'" "H4'" sing N N 65 BDA "O4'" "HO4'" sing N N 66 BDA "C5'" "O5'" sing N N 67 BDA "C5'" "C6'" sing N N 68 BDA "C5'" "H5'" sing N N 69 BDA "C6'" "H6'1" sing N N 70 BDA "C6'" "H6'2" sing N N 71 BDA "C6'" "H6'3" sing N N 72 BDA "C7'" "C8'" sing N N 73 BDA "C7'" "H7'1" sing N N 74 BDA "C7'" "H7'2" sing N N 75 BDA "C8'" C9A doub Y N 76 BDA "C8'" C9B sing Y N 77 BDA C9A C1A sing Y N 78 BDA C9A H9A sing N N 79 BDA C9B C1C doub Y N 80 BDA C9B H9B sing N N 81 BDA C1B C2B doub Y N 82 BDA C1B "CK'" sing Y N 83 BDA C1B "H1'" sing N N 84 BDA C2B C3B sing Y N 85 BDA C2B "H2'" sing N N 86 BDA C3B C4B doub Y N 87 BDA C3B "H3'" sing N N 88 BDA C4B O4B sing N N 89 BDA C4B C5B sing Y N 90 BDA O4B "CL'" sing N N 91 BDA C5B C6B sing N N 92 BDA C5B "CK'" doub Y N 93 BDA C6B "O6'" doub N N 94 BDA C6B C7B sing N N 95 BDA C7B C8B sing Y N 96 BDA C7B "CI'" doub Y N 97 BDA C8B "O8'" sing N N 98 BDA C8B "C9'" doub Y N 99 BDA "O8'" "HO8'" sing N N 100 BDA "C9'" "CA'" sing N N 101 BDA "C9'" "CG'" sing Y N 102 BDA "CA'" "OA'" sing N N 103 BDA "CA'" "CB'" sing N N 104 BDA "CA'" "H10'" sing N N 105 BDA "OA'" C1D sing N N 106 BDA "CB'" "CC'" sing N N 107 BDA "CB'" "HL'1" sing N N 108 BDA "CB'" "HL'2" sing N N 109 BDA "CC'" "OC'" sing N N 110 BDA "CC'" "CD'" sing N N 111 BDA "CC'" "CF'" sing N N 112 BDA "OC'" "H12'" sing N N 113 BDA "CD'" "OD'" doub N N 114 BDA "CD'" "CE'" sing N N 115 BDA "CE'" "HK'1" sing N N 116 BDA "CE'" "HK'2" sing N N 117 BDA "CE'" "HK'3" sing N N 118 BDA "CF'" "CG'" sing N N 119 BDA "CF'" "HJ'1" sing N N 120 BDA "CF'" "HJ'2" sing N N 121 BDA "CG'" "CH'" doub Y N 122 BDA "CH'" "OH'" sing N N 123 BDA "CH'" "CI'" sing Y N 124 BDA "OH'" "H17'" sing N N 125 BDA "CI'" "CJ'" sing N N 126 BDA "CJ'" "OJ'" doub N N 127 BDA "CJ'" "CK'" sing N N 128 BDA "CL'" "HI'1" sing N N 129 BDA "CL'" "HI'2" sing N N 130 BDA "CL'" "HI'3" sing N N 131 BDA C1D C2D sing N N 132 BDA C1D O5D sing N N 133 BDA C1D H1D sing N N 134 BDA C2D C3D sing N N 135 BDA C2D H2B sing N N 136 BDA C2D H2D sing N N 137 BDA C3D N3D sing N N 138 BDA C3D C4D sing N N 139 BDA C3D H3D sing N N 140 BDA N3D C7D sing N N 141 BDA N3D HNB sing N N 142 BDA N3D HND sing N N 143 BDA C4D O4D sing N N 144 BDA C4D C5D sing N N 145 BDA C4D H4D sing N N 146 BDA O4D HO4A sing N N 147 BDA C5D O5D sing N N 148 BDA C5D C6D sing N N 149 BDA C5D H5D sing N N 150 BDA C6D H6B sing N N 151 BDA C6D H6D sing N N 152 BDA C6D H6E sing N N 153 BDA C7D C8D sing N N 154 BDA C7D H7B sing N N 155 BDA C7D H7D sing N N 156 BDA C8D C1A doub Y N 157 BDA C8D C1C sing Y N 158 BDA C1A "H9A'" sing N N 159 BDA C1C "H9B'" sing N N 160 DA OP3 P sing N N 161 DA OP3 HOP3 sing N N 162 DA P OP1 doub N N 163 DA P OP2 sing N N 164 DA P "O5'" sing N N 165 DA OP2 HOP2 sing N N 166 DA "O5'" "C5'" sing N N 167 DA "C5'" "C4'" sing N N 168 DA "C5'" "H5'" sing N N 169 DA "C5'" "H5''" sing N N 170 DA "C4'" "O4'" sing N N 171 DA "C4'" "C3'" sing N N 172 DA "C4'" "H4'" sing N N 173 DA "O4'" "C1'" sing N N 174 DA "C3'" "O3'" sing N N 175 DA "C3'" "C2'" sing N N 176 DA "C3'" "H3'" sing N N 177 DA "O3'" "HO3'" sing N N 178 DA "C2'" "C1'" sing N N 179 DA "C2'" "H2'" sing N N 180 DA "C2'" "H2''" sing N N 181 DA "C1'" N9 sing N N 182 DA "C1'" "H1'" sing N N 183 DA N9 C8 sing Y N 184 DA N9 C4 sing Y N 185 DA C8 N7 doub Y N 186 DA C8 H8 sing N N 187 DA N7 C5 sing Y N 188 DA C5 C6 sing Y N 189 DA C5 C4 doub Y N 190 DA C6 N6 sing N N 191 DA C6 N1 doub Y N 192 DA N6 H61 sing N N 193 DA N6 H62 sing N N 194 DA N1 C2 sing Y N 195 DA C2 N3 doub Y N 196 DA C2 H2 sing N N 197 DA N3 C4 sing Y N 198 DC OP3 P sing N N 199 DC OP3 HOP3 sing N N 200 DC P OP1 doub N N 201 DC P OP2 sing N N 202 DC P "O5'" sing N N 203 DC OP2 HOP2 sing N N 204 DC "O5'" "C5'" sing N N 205 DC "C5'" "C4'" sing N N 206 DC "C5'" "H5'" sing N N 207 DC "C5'" "H5''" sing N N 208 DC "C4'" "O4'" sing N N 209 DC "C4'" "C3'" sing N N 210 DC "C4'" "H4'" sing N N 211 DC "O4'" "C1'" sing N N 212 DC "C3'" "O3'" sing N N 213 DC "C3'" "C2'" sing N N 214 DC "C3'" "H3'" sing N N 215 DC "O3'" "HO3'" sing N N 216 DC "C2'" "C1'" sing N N 217 DC "C2'" "H2'" sing N N 218 DC "C2'" "H2''" sing N N 219 DC "C1'" N1 sing N N 220 DC "C1'" "H1'" sing N N 221 DC N1 C2 sing N N 222 DC N1 C6 sing N N 223 DC C2 O2 doub N N 224 DC C2 N3 sing N N 225 DC N3 C4 doub N N 226 DC C4 N4 sing N N 227 DC C4 C5 sing N N 228 DC N4 H41 sing N N 229 DC N4 H42 sing N N 230 DC C5 C6 doub N N 231 DC C5 H5 sing N N 232 DC C6 H6 sing N N 233 DG OP3 P sing N N 234 DG OP3 HOP3 sing N N 235 DG P OP1 doub N N 236 DG P OP2 sing N N 237 DG P "O5'" sing N N 238 DG OP2 HOP2 sing N N 239 DG "O5'" "C5'" sing N N 240 DG "C5'" "C4'" sing N N 241 DG "C5'" "H5'" sing N N 242 DG "C5'" "H5''" sing N N 243 DG "C4'" "O4'" sing N N 244 DG "C4'" "C3'" sing N N 245 DG "C4'" "H4'" sing N N 246 DG "O4'" "C1'" sing N N 247 DG "C3'" "O3'" sing N N 248 DG "C3'" "C2'" sing N N 249 DG "C3'" "H3'" sing N N 250 DG "O3'" "HO3'" sing N N 251 DG "C2'" "C1'" sing N N 252 DG "C2'" "H2'" sing N N 253 DG "C2'" "H2''" sing N N 254 DG "C1'" N9 sing N N 255 DG "C1'" "H1'" sing N N 256 DG N9 C8 sing Y N 257 DG N9 C4 sing Y N 258 DG C8 N7 doub Y N 259 DG C8 H8 sing N N 260 DG N7 C5 sing Y N 261 DG C5 C6 sing N N 262 DG C5 C4 doub Y N 263 DG C6 O6 doub N N 264 DG C6 N1 sing N N 265 DG N1 C2 sing N N 266 DG N1 H1 sing N N 267 DG C2 N2 sing N N 268 DG C2 N3 doub N N 269 DG N2 H21 sing N N 270 DG N2 H22 sing N N 271 DG N3 C4 sing N N 272 DT OP3 P sing N N 273 DT OP3 HOP3 sing N N 274 DT P OP1 doub N N 275 DT P OP2 sing N N 276 DT P "O5'" sing N N 277 DT OP2 HOP2 sing N N 278 DT "O5'" "C5'" sing N N 279 DT "C5'" "C4'" sing N N 280 DT "C5'" "H5'" sing N N 281 DT "C5'" "H5''" sing N N 282 DT "C4'" "O4'" sing N N 283 DT "C4'" "C3'" sing N N 284 DT "C4'" "H4'" sing N N 285 DT "O4'" "C1'" sing N N 286 DT "C3'" "O3'" sing N N 287 DT "C3'" "C2'" sing N N 288 DT "C3'" "H3'" sing N N 289 DT "O3'" "HO3'" sing N N 290 DT "C2'" "C1'" sing N N 291 DT "C2'" "H2'" sing N N 292 DT "C2'" "H2''" sing N N 293 DT "C1'" N1 sing N N 294 DT "C1'" "H1'" sing N N 295 DT N1 C2 sing N N 296 DT N1 C6 sing N N 297 DT C2 O2 doub N N 298 DT C2 N3 sing N N 299 DT N3 C4 sing N N 300 DT N3 H3 sing N N 301 DT C4 O4 doub N N 302 DT C4 C5 sing N N 303 DT C5 C7 sing N N 304 DT C5 C6 doub N N 305 DT C7 H71 sing N N 306 DT C7 H72 sing N N 307 DT C7 H73 sing N N 308 DT C6 H6 sing N N 309 HOH O H1 sing N N 310 HOH O H2 sing N N 311 # _ndb_struct_conf_na.entry_id 1AGL _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 6 8_665 0.410 -0.367 -0.099 7.237 1.710 -0.918 1 A_DC1:DG6_A A 1 ? A 6 ? 19 1 1 A DG 2 1_555 A DC 5 8_665 -0.610 -0.530 -0.312 -20.524 2.722 -0.778 2 A_DG2:DC5_A A 2 ? A 5 ? 19 1 1 A DA 3 1_555 A DT 4 8_665 -0.184 -0.211 0.214 -2.211 -5.817 4.199 3 A_DA3:DT4_A A 3 ? A 4 ? 20 1 1 A DT 4 1_555 A DA 3 8_665 0.184 -0.211 0.214 2.211 -5.817 4.199 4 A_DT4:DA3_A A 4 ? A 3 ? 20 1 1 A DC 5 1_555 A DG 2 8_665 0.610 -0.530 -0.312 20.524 2.722 -0.778 5 A_DC5:DG2_A A 5 ? A 2 ? 19 1 1 A DG 6 1_555 A DC 1 8_665 -0.410 -0.367 -0.099 -7.237 1.709 -0.918 6 A_DG6:DC1_A A 6 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 6 8_665 A DG 2 1_555 A DC 5 8_665 0.884 1.325 7.184 3.211 -1.036 31.378 2.860 -0.312 7.190 -1.909 -5.916 31.554 1 AA_DC1DG2:DC5DG6_AA A 1 ? A 6 ? A 2 ? A 5 ? 1 A DG 2 1_555 A DC 5 8_665 A DA 3 1_555 A DT 4 8_665 -0.777 1.720 3.036 -7.839 2.873 35.269 2.373 0.176 3.254 4.661 12.719 36.213 2 AA_DG2DA3:DT4DC5_AA A 2 ? A 5 ? A 3 ? A 4 ? 1 A DA 3 1_555 A DT 4 8_665 A DT 4 1_555 A DA 3 8_665 0.000 -0.596 3.382 0.000 -1.925 29.915 -0.741 0.000 3.413 -3.724 0.000 29.976 3 AA_DA3DT4:DA3DT4_AA A 3 ? A 4 ? A 4 ? A 3 ? 1 A DT 4 1_555 A DA 3 8_665 A DC 5 1_555 A DG 2 8_665 0.777 1.720 3.036 7.839 2.873 35.269 2.373 -0.176 3.254 4.661 -12.719 36.213 4 AA_DT4DC5:DG2DA3_AA A 4 ? A 3 ? A 5 ? A 2 ? 1 A DC 5 1_555 A DG 2 8_665 A DG 6 1_555 A DC 1 8_665 -0.884 1.325 7.184 -3.211 -1.036 31.378 2.860 0.312 7.190 -1.909 5.916 31.554 5 AA_DC5DG6:DC1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ? # _pdbx_initial_refinement_model.accession_code 152D _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details DDF045 # _atom_sites.entry_id 1AGL _atom_sites.fract_transf_matrix[1][1] 0.035373 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.035373 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018598 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DC A 1 1 ? 8.502 19.354 23.546 1.00 21.94 ? 1 DC A "O5'" 1 ATOM 2 C "C5'" . DC A 1 1 ? 9.070 20.429 24.302 1.00 16.63 ? 1 DC A "C5'" 1 ATOM 3 C "C4'" . DC A 1 1 ? 10.542 20.221 24.701 1.00 18.84 ? 1 DC A "C4'" 1 ATOM 4 O "O4'" . DC A 1 1 ? 10.767 19.021 25.470 1.00 12.77 ? 1 DC A "O4'" 1 ATOM 5 C "C3'" . DC A 1 1 ? 11.454 20.193 23.484 1.00 18.81 ? 1 DC A "C3'" 1 ATOM 6 O "O3'" . DC A 1 1 ? 12.523 21.099 23.753 1.00 23.77 ? 1 DC A "O3'" 1 ATOM 7 C "C2'" . DC A 1 1 ? 11.893 18.739 23.440 1.00 15.12 ? 1 DC A "C2'" 1 ATOM 8 C "C1'" . DC A 1 1 ? 11.810 18.251 24.879 1.00 12.90 ? 1 DC A "C1'" 1 ATOM 9 N N1 . DC A 1 1 ? 11.408 16.840 24.975 1.00 13.97 ? 1 DC A N1 1 ATOM 10 C C2 . DC A 1 1 ? 12.383 15.863 25.121 1.00 10.17 ? 1 DC A C2 1 ATOM 11 O O2 . DC A 1 1 ? 13.577 16.125 25.196 1.00 9.00 ? 1 DC A O2 1 ATOM 12 N N3 . DC A 1 1 ? 12.003 14.568 25.189 1.00 10.22 ? 1 DC A N3 1 ATOM 13 C C4 . DC A 1 1 ? 10.714 14.257 25.138 1.00 6.53 ? 1 DC A C4 1 ATOM 14 N N4 . DC A 1 1 ? 10.390 12.993 25.207 1.00 11.82 ? 1 DC A N4 1 ATOM 15 C C5 . DC A 1 1 ? 9.685 15.235 24.998 1.00 12.34 ? 1 DC A C5 1 ATOM 16 C C6 . DC A 1 1 ? 10.086 16.518 24.914 1.00 9.72 ? 1 DC A C6 1 ATOM 17 P P . DG A 1 2 ? 12.945 22.222 22.687 1.00 26.09 ? 2 DG A P 1 ATOM 18 O OP1 . DG A 1 2 ? 13.930 23.098 23.354 1.00 26.89 ? 2 DG A OP1 1 ATOM 19 O OP2 . DG A 1 2 ? 11.731 22.825 22.086 1.00 28.36 ? 2 DG A OP2 1 ATOM 20 O "O5'" . DG A 1 2 ? 13.690 21.362 21.546 1.00 27.59 ? 2 DG A "O5'" 1 ATOM 21 C "C5'" . DG A 1 2 ? 15.046 20.874 21.704 1.00 24.61 ? 2 DG A "C5'" 1 ATOM 22 C "C4'" . DG A 1 2 ? 15.583 20.024 20.523 1.00 23.60 ? 2 DG A "C4'" 1 ATOM 23 O "O4'" . DG A 1 2 ? 14.872 18.779 20.379 1.00 22.26 ? 2 DG A "O4'" 1 ATOM 24 C "C3'" . DG A 1 2 ? 15.431 20.792 19.194 1.00 21.88 ? 2 DG A "C3'" 1 ATOM 25 O "O3'" . DG A 1 2 ? 16.631 20.728 18.409 1.00 27.23 ? 2 DG A "O3'" 1 ATOM 26 C "C2'" . DG A 1 2 ? 14.300 20.050 18.533 1.00 19.18 ? 2 DG A "C2'" 1 ATOM 27 C "C1'" . DG A 1 2 ? 14.546 18.634 18.987 1.00 15.61 ? 2 DG A "C1'" 1 ATOM 28 N N9 . DG A 1 2 ? 13.397 17.743 18.821 1.00 7.33 ? 2 DG A N9 1 ATOM 29 C C8 . DG A 1 2 ? 12.065 18.010 18.830 1.00 7.79 ? 2 DG A C8 1 ATOM 30 N N7 . DG A 1 2 ? 11.301 16.960 18.679 1.00 6.65 ? 2 DG A N7 1 ATOM 31 C C5 . DG A 1 2 ? 12.220 15.919 18.597 1.00 2.35 ? 2 DG A C5 1 ATOM 32 C C6 . DG A 1 2 ? 12.007 14.541 18.430 1.00 6.98 ? 2 DG A C6 1 ATOM 33 O O6 . DG A 1 2 ? 10.927 13.965 18.342 1.00 9.54 ? 2 DG A O6 1 ATOM 34 N N1 . DG A 1 2 ? 13.198 13.834 18.391 1.00 6.90 ? 2 DG A N1 1 ATOM 35 C C2 . DG A 1 2 ? 14.440 14.407 18.504 1.00 9.83 ? 2 DG A C2 1 ATOM 36 N N2 . DG A 1 2 ? 15.495 13.626 18.482 1.00 2.85 ? 2 DG A N2 1 ATOM 37 N N3 . DG A 1 2 ? 14.644 15.699 18.663 1.00 2.01 ? 2 DG A N3 1 ATOM 38 C C4 . DG A 1 2 ? 13.494 16.392 18.691 1.00 7.39 ? 2 DG A C4 1 ATOM 39 P P . DA A 1 3 ? 17.534 22.042 18.075 1.00 31.53 ? 3 DA A P 1 ATOM 40 O OP1 . DA A 1 3 ? 18.073 22.637 19.330 1.00 31.06 ? 3 DA A OP1 1 ATOM 41 O OP2 . DA A 1 3 ? 16.788 22.883 17.101 1.00 28.99 ? 3 DA A OP2 1 ATOM 42 O "O5'" . DA A 1 3 ? 18.740 21.338 17.289 1.00 30.21 ? 3 DA A "O5'" 1 ATOM 43 C "C5'" . DA A 1 3 ? 19.598 20.449 17.996 1.00 23.22 ? 3 DA A "C5'" 1 ATOM 44 C "C4'" . DA A 1 3 ? 19.851 19.155 17.237 1.00 18.82 ? 3 DA A "C4'" 1 ATOM 45 O "O4'" . DA A 1 3 ? 18.702 18.301 17.146 1.00 16.53 ? 3 DA A "O4'" 1 ATOM 46 C "C3'" . DA A 1 3 ? 20.327 19.447 15.844 1.00 15.71 ? 3 DA A "C3'" 1 ATOM 47 O "O3'" . DA A 1 3 ? 21.510 18.681 15.644 1.00 16.92 ? 3 DA A "O3'" 1 ATOM 48 C "C2'" . DA A 1 3 ? 19.183 18.974 14.996 1.00 15.63 ? 3 DA A "C2'" 1 ATOM 49 C "C1'" . DA A 1 3 ? 18.517 17.870 15.805 1.00 16.07 ? 3 DA A "C1'" 1 ATOM 50 N N9 . DA A 1 3 ? 17.060 17.826 15.615 1.00 14.70 ? 3 DA A N9 1 ATOM 51 C C8 . DA A 1 3 ? 16.165 18.859 15.615 1.00 14.07 ? 3 DA A C8 1 ATOM 52 N N7 . DA A 1 3 ? 14.929 18.497 15.442 1.00 12.78 ? 3 DA A N7 1 ATOM 53 C C5 . DA A 1 3 ? 15.020 17.118 15.366 1.00 11.98 ? 3 DA A C5 1 ATOM 54 C C6 . DA A 1 3 ? 14.058 16.132 15.186 1.00 15.93 ? 3 DA A C6 1 ATOM 55 N N6 . DA A 1 3 ? 12.766 16.399 15.060 1.00 15.90 ? 3 DA A N6 1 ATOM 56 N N1 . DA A 1 3 ? 14.467 14.875 15.128 1.00 12.49 ? 3 DA A N1 1 ATOM 57 C C2 . DA A 1 3 ? 15.764 14.625 15.271 1.00 12.30 ? 3 DA A C2 1 ATOM 58 N N3 . DA A 1 3 ? 16.781 15.447 15.434 1.00 16.40 ? 3 DA A N3 1 ATOM 59 C C4 . DA A 1 3 ? 16.313 16.704 15.485 1.00 13.83 ? 3 DA A C4 1 ATOM 60 P P . DT A 1 4 ? 22.364 18.806 14.300 1.00 18.81 ? 4 DT A P 1 ATOM 61 O OP1 . DT A 1 4 ? 23.797 18.603 14.624 1.00 21.11 ? 4 DT A OP1 1 ATOM 62 O OP2 . DT A 1 4 ? 21.907 20.015 13.566 1.00 13.70 ? 4 DT A OP2 1 ATOM 63 O "O5'" . DT A 1 4 ? 21.856 17.562 13.477 1.00 16.62 ? 4 DT A "O5'" 1 ATOM 64 C "C5'" . DT A 1 4 ? 22.036 16.232 13.982 1.00 15.93 ? 4 DT A "C5'" 1 ATOM 65 C "C4'" . DT A 1 4 ? 21.125 15.259 13.240 1.00 13.91 ? 4 DT A "C4'" 1 ATOM 66 O "O4'" . DT A 1 4 ? 19.757 15.675 13.300 1.00 15.60 ? 4 DT A "O4'" 1 ATOM 67 C "C3'" . DT A 1 4 ? 21.474 15.256 11.760 1.00 11.48 ? 4 DT A "C3'" 1 ATOM 68 O "O3'" . DT A 1 4 ? 22.373 14.183 11.534 1.00 17.80 ? 4 DT A "O3'" 1 ATOM 69 C "C2'" . DT A 1 4 ? 20.139 15.109 11.089 1.00 9.95 ? 4 DT A "C2'" 1 ATOM 70 C "C1'" . DT A 1 4 ? 19.124 15.003 12.199 1.00 12.47 ? 4 DT A "C1'" 1 ATOM 71 N N1 . DT A 1 4 ? 17.832 15.692 12.010 1.00 10.28 ? 4 DT A N1 1 ATOM 72 C C2 . DT A 1 4 ? 16.692 14.931 11.920 1.00 11.51 ? 4 DT A C2 1 ATOM 73 O O2 . DT A 1 4 ? 16.676 13.723 11.910 1.00 13.83 ? 4 DT A O2 1 ATOM 74 N N3 . DT A 1 4 ? 15.504 15.582 11.817 1.00 15.02 ? 4 DT A N3 1 ATOM 75 C C4 . DT A 1 4 ? 15.342 16.937 11.797 1.00 13.07 ? 4 DT A C4 1 ATOM 76 O O4 . DT A 1 4 ? 14.210 17.389 11.674 1.00 15.33 ? 4 DT A O4 1 ATOM 77 C C5 . DT A 1 4 ? 16.572 17.683 11.910 1.00 10.85 ? 4 DT A C5 1 ATOM 78 C C7 . DT A 1 4 ? 16.559 19.213 11.870 1.00 12.24 ? 4 DT A C7 1 ATOM 79 C C6 . DT A 1 4 ? 17.749 17.054 12.020 1.00 9.06 ? 4 DT A C6 1 ATOM 80 P P . DC A 1 5 ? 23.588 14.250 10.489 1.00 24.72 ? 5 DC A P 1 ATOM 81 O OP1 . DC A 1 5 ? 24.604 13.267 10.939 1.00 27.14 ? 5 DC A OP1 1 ATOM 82 O OP2 . DC A 1 5 ? 23.967 15.656 10.199 1.00 25.23 ? 5 DC A OP2 1 ATOM 83 O "O5'" . DC A 1 5 ? 22.883 13.702 9.170 1.00 22.42 ? 5 DC A "O5'" 1 ATOM 84 C "C5'" . DC A 1 5 ? 22.488 12.335 9.065 1.00 17.60 ? 5 DC A "C5'" 1 ATOM 85 C "C4'" . DC A 1 5 ? 21.344 12.155 8.081 1.00 16.50 ? 5 DC A "C4'" 1 ATOM 86 O "O4'" . DC A 1 5 ? 20.231 12.969 8.519 1.00 12.38 ? 5 DC A "O4'" 1 ATOM 87 C "C3'" . DC A 1 5 ? 21.697 12.530 6.641 1.00 13.96 ? 5 DC A "C3'" 1 ATOM 88 O "O3'" . DC A 1 5 ? 21.133 11.578 5.761 1.00 17.70 ? 5 DC A "O3'" 1 ATOM 89 C "C2'" . DC A 1 5 ? 20.900 13.792 6.477 1.00 10.61 ? 5 DC A "C2'" 1 ATOM 90 C "C1'" . DC A 1 5 ? 19.687 13.563 7.366 1.00 11.66 ? 5 DC A "C1'" 1 ATOM 91 N N1 . DC A 1 5 ? 18.956 14.787 7.738 1.00 9.19 ? 5 DC A N1 1 ATOM 92 C C2 . DC A 1 5 ? 17.638 14.683 8.071 1.00 5.97 ? 5 DC A C2 1 ATOM 93 O O2 . DC A 1 5 ? 17.036 13.622 8.095 1.00 10.61 ? 5 DC A O2 1 ATOM 94 N N3 . DC A 1 5 ? 16.947 15.797 8.354 1.00 11.36 ? 5 DC A N3 1 ATOM 95 C C4 . DC A 1 5 ? 17.535 16.980 8.344 1.00 12.57 ? 5 DC A C4 1 ATOM 96 N N4 . DC A 1 5 ? 16.807 18.055 8.631 1.00 11.51 ? 5 DC A N4 1 ATOM 97 C C5 . DC A 1 5 ? 18.915 17.112 8.036 1.00 13.44 ? 5 DC A C5 1 ATOM 98 C C6 . DC A 1 5 ? 19.578 15.983 7.722 1.00 10.55 ? 5 DC A C6 1 ATOM 99 P P . DG A 1 6 ? 22.034 10.655 4.838 1.00 22.85 ? 6 DG A P 1 ATOM 100 O OP1 . DG A 1 6 ? 22.656 9.602 5.694 1.00 18.10 ? 6 DG A OP1 1 ATOM 101 O OP2 . DG A 1 6 ? 22.893 11.545 4.005 1.00 14.77 ? 6 DG A OP2 1 ATOM 102 O "O5'" . DG A 1 6 ? 20.948 9.954 3.873 1.00 16.04 ? 6 DG A "O5'" 1 ATOM 103 C "C5'" . DG A 1 6 ? 20.006 9.039 4.425 1.00 15.69 ? 6 DG A "C5'" 1 ATOM 104 C "C4'" . DG A 1 6 ? 18.971 8.532 3.429 1.00 13.83 ? 6 DG A "C4'" 1 ATOM 105 O "O4'" . DG A 1 6 ? 17.983 9.508 3.023 1.00 14.10 ? 6 DG A "O4'" 1 ATOM 106 C "C3'" . DG A 1 6 ? 19.647 8.071 2.157 1.00 11.99 ? 6 DG A "C3'" 1 ATOM 107 O "O3'" . DG A 1 6 ? 18.907 6.985 1.630 1.00 17.17 ? 6 DG A "O3'" 1 ATOM 108 C "C2'" . DG A 1 6 ? 19.496 9.269 1.257 1.00 9.11 ? 6 DG A "C2'" 1 ATOM 109 C "C1'" . DG A 1 6 ? 18.146 9.877 1.643 1.00 7.05 ? 6 DG A "C1'" 1 ATOM 110 N N9 . DG A 1 6 ? 18.180 11.347 1.612 1.00 5.84 ? 6 DG A N9 1 ATOM 111 C C8 . DG A 1 6 ? 19.260 12.185 1.702 1.00 7.02 ? 6 DG A C8 1 ATOM 112 N N7 . DG A 1 6 ? 18.976 13.451 1.691 1.00 2.10 ? 6 DG A N7 1 ATOM 113 C C5 . DG A 1 6 ? 17.598 13.444 1.634 1.00 4.72 ? 6 DG A C5 1 ATOM 114 C C6 . DG A 1 6 ? 16.703 14.530 1.601 1.00 9.98 ? 6 DG A C6 1 ATOM 115 O O6 . DG A 1 6 ? 16.962 15.722 1.624 1.00 3.59 ? 6 DG A O6 1 ATOM 116 N N1 . DG A 1 6 ? 15.390 14.123 1.552 1.00 8.40 ? 6 DG A N1 1 ATOM 117 C C2 . DG A 1 6 ? 14.997 12.822 1.533 1.00 9.84 ? 6 DG A C2 1 ATOM 118 N N2 . DG A 1 6 ? 13.704 12.608 1.475 1.00 13.81 ? 6 DG A N2 1 ATOM 119 N N3 . DG A 1 6 ? 15.815 11.784 1.542 1.00 11.20 ? 6 DG A N3 1 ATOM 120 C C4 . DG A 1 6 ? 17.106 12.172 1.595 1.00 3.52 ? 6 DG A C4 1 HETATM 121 C C1 . BDA B 2 . ? 16.000 19.065 5.115 1.00 12.71 ? 7 BDA A C1 1 HETATM 122 C C2 . BDA B 2 . ? 17.112 19.838 5.052 1.00 15.25 ? 7 BDA A C2 1 HETATM 123 C C3 . BDA B 2 . ? 18.336 19.275 4.895 1.00 17.32 ? 7 BDA A C3 1 HETATM 124 C C4 . BDA B 2 . ? 18.456 17.816 4.793 1.00 20.92 ? 7 BDA A C4 1 HETATM 125 O O4 . BDA B 2 . ? 19.707 17.103 4.674 1.00 21.47 ? 7 BDA A O4 1 HETATM 126 C C5 . BDA B 2 . ? 17.265 16.997 4.876 1.00 12.54 ? 7 BDA A C5 1 HETATM 127 C C6 . BDA B 2 . ? 17.333 15.560 4.813 1.00 11.38 ? 7 BDA A C6 1 HETATM 128 O O6 . BDA B 2 . ? 18.405 15.003 4.688 1.00 12.12 ? 7 BDA A O6 1 HETATM 129 C C7 . BDA B 2 . ? 16.094 14.841 4.913 1.00 9.33 ? 7 BDA A C7 1 HETATM 130 C C8 . BDA B 2 . ? 16.114 13.411 4.856 1.00 8.26 ? 7 BDA A C8 1 HETATM 131 O O8 . BDA B 2 . ? 17.285 12.740 4.689 1.00 11.07 ? 7 BDA A O8 1 HETATM 132 C C9 . BDA B 2 . ? 14.899 12.677 4.896 1.00 7.22 ? 7 BDA A C9 1 HETATM 133 C C10 . BDA B 2 . ? 14.996 11.195 4.902 1.00 7.42 ? 7 BDA A C10 1 HETATM 134 O O10 . BDA B 2 . ? 15.549 10.849 6.191 1.00 14.24 ? 7 BDA A O10 1 HETATM 135 C C11 . BDA B 2 . ? 13.630 10.484 4.709 1.00 2.78 ? 7 BDA A C11 1 HETATM 136 C C12 . BDA B 2 . ? 12.565 11.145 5.570 1.00 5.10 ? 7 BDA A C12 1 HETATM 137 O O12 . BDA B 2 . ? 12.934 11.091 6.959 1.00 12.28 ? 7 BDA A O12 1 HETATM 138 C C13 . BDA B 2 . ? 11.238 10.429 5.350 1.00 12.64 ? 7 BDA A C13 1 HETATM 139 O O13 . BDA B 2 . ? 10.520 10.676 4.375 1.00 23.18 ? 7 BDA A O13 1 HETATM 140 C C14 . BDA B 2 . ? 10.832 9.347 6.340 1.00 11.57 ? 7 BDA A C14 1 HETATM 141 C C15 . BDA B 2 . ? 12.396 12.579 5.106 1.00 2.80 ? 7 BDA A C15 1 HETATM 142 C C16 . BDA B 2 . ? 13.694 13.347 5.041 1.00 8.24 ? 7 BDA A C16 1 HETATM 143 C C17 . BDA B 2 . ? 13.675 14.777 5.110 1.00 9.04 ? 7 BDA A C17 1 HETATM 144 O O17 . BDA B 2 . ? 12.519 15.480 5.236 1.00 16.01 ? 7 BDA A O17 1 HETATM 145 C C18 . BDA B 2 . ? 14.890 15.509 5.044 1.00 10.93 ? 7 BDA A C18 1 HETATM 146 C C19 . BDA B 2 . ? 14.819 16.940 5.110 1.00 13.27 ? 7 BDA A C19 1 HETATM 147 O O19 . BDA B 2 . ? 13.770 17.572 5.229 1.00 15.89 ? 7 BDA A O19 1 HETATM 148 C C20 . BDA B 2 . ? 16.051 17.654 5.030 1.00 13.16 ? 7 BDA A C20 1 HETATM 149 C C21 . BDA B 2 . ? 20.942 17.717 4.588 1.00 28.12 ? 7 BDA A C21 1 HETATM 150 C "C1'" . BDA B 2 . ? 16.743 10.049 6.188 1.00 12.83 ? 7 BDA A "C1'" 1 HETATM 151 C "C2'" . BDA B 2 . ? 17.456 10.099 7.549 1.00 15.30 ? 7 BDA A "C2'" 1 HETATM 152 C "C3'" . BDA B 2 . ? 16.628 9.429 8.658 1.00 17.84 ? 7 BDA A "C3'" 1 HETATM 153 N "N3'" . BDA B 2 . ? 17.478 9.558 9.840 1.00 22.41 ? 7 BDA A "N3'" 1 HETATM 154 C "C4'" . BDA B 2 . ? 16.280 7.960 8.260 1.00 17.28 ? 7 BDA A "C4'" 1 HETATM 155 O "O4'" . BDA B 2 . ? 17.413 7.036 8.227 1.00 18.11 ? 7 BDA A "O4'" 1 HETATM 156 C "C5'" . BDA B 2 . ? 15.604 8.009 6.873 1.00 15.91 ? 7 BDA A "C5'" 1 HETATM 157 O "O5'" . BDA B 2 . ? 16.399 8.693 5.853 1.00 13.96 ? 7 BDA A "O5'" 1 HETATM 158 C "C6'" . BDA B 2 . ? 15.321 6.584 6.422 1.00 16.41 ? 7 BDA A "C6'" 1 HETATM 159 C "C7'" . BDA B 2 . ? 16.806 9.081 11.034 1.00 30.90 ? 7 BDA A "C7'" 1 HETATM 160 C "C8'" . BDA B 2 . ? 17.458 9.663 12.277 1.00 37.32 ? 7 BDA A "C8'" 1 HETATM 161 C C9A . BDA B 2 . ? 16.880 10.840 12.888 0.50 38.09 ? 7 BDA A C9A 1 HETATM 162 C C9B . BDA B 2 . ? 18.650 9.076 12.882 0.50 43.55 ? 7 BDA A C9B 1 HETATM 163 O O . HOH C 3 . ? 8.572 16.905 17.906 1.00 39.71 ? 8 HOH A O 1 HETATM 164 O O . HOH C 3 . ? 18.722 20.854 8.906 1.00 35.71 ? 9 HOH A O 1 HETATM 165 O O . HOH C 3 . ? 12.322 20.544 14.950 1.00 42.27 ? 10 HOH A O 1 HETATM 166 O O . HOH C 3 . ? 19.722 7.768 9.878 1.00 59.78 ? 11 HOH A O 1 HETATM 167 O O . HOH C 3 . ? 8.139 10.500 25.318 1.00 53.75 ? 12 HOH A O 1 HETATM 168 O O . HOH C 3 . ? 19.842 22.115 12.212 1.00 40.31 ? 13 HOH A O 1 HETATM 169 O O . HOH C 3 . ? 20.008 27.454 18.011 1.00 36.98 ? 14 HOH A O 1 HETATM 170 O O . HOH C 3 . ? 12.335 19.648 12.087 1.00 46.13 ? 15 HOH A O 1 #