data_1D33 # _entry.id 1D33 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1D33 pdb_00001d33 10.2210/pdb1d33/pdb RCSB DDF023 ? ? WWPDB D_1000172638 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1992-04-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_dist_value' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 10 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 12 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 17 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 18 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 19 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1D33 _pdbx_database_status.recvd_initial_deposition_date 1991-02-27 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wang, A.H.-J.' 1 'Gao, Y.-G.' 2 'Liaw, Y.-C.' 3 'Li, Y.-K.' 4 # _citation.id primary _citation.title 'Formaldehyde cross-links daunorubicin and DNA efficiently: HPLC and X-ray diffraction studies.' _citation.journal_abbrev Biochemistry _citation.journal_volume 30 _citation.page_first 3812 _citation.page_last 3815 _citation.year 1991 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 2018756 _citation.pdbx_database_id_DOI 10.1021/bi00230a002 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, A.H.' 1 ? primary 'Gao, Y.G.' 2 ? primary 'Liaw, Y.C.' 3 ? primary 'Li, Y.K.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*CP*(G49)P*CP*G)-3'" 1824.232 1 ? ? ? ? 2 non-polymer syn DAUNOMYCIN 527.520 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 water nat water 18.015 65 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(G49)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGCG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 DAUNOMYCIN DM1 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 G49 n 1 5 DC n 1 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DM1 non-polymer . DAUNOMYCIN DAUNORUBICIN 'C27 H29 N O10' 527.520 G49 'DNA linking' n "N2-METHYL-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O7 P' 361.248 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 G49 4 4 4 G49 +G A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DM1 1 7 4 DM1 DM1 A . C 3 MG 1 8 8 MG MG A . D 4 HOH 1 9 9 HOH HOH A . D 4 HOH 2 10 10 HOH HOH A . D 4 HOH 3 11 11 HOH HOH A . D 4 HOH 4 12 12 HOH HOH A . D 4 HOH 5 13 13 HOH HOH A . D 4 HOH 6 14 14 HOH HOH A . D 4 HOH 7 15 15 HOH HOH A . D 4 HOH 8 16 16 HOH HOH A . D 4 HOH 9 17 17 HOH HOH A . D 4 HOH 10 18 18 HOH HOH A . D 4 HOH 11 19 19 HOH HOH A . D 4 HOH 12 20 20 HOH HOH A . D 4 HOH 13 21 21 HOH HOH A . D 4 HOH 14 22 22 HOH HOH A . D 4 HOH 15 23 23 HOH HOH A . D 4 HOH 16 24 24 HOH HOH A . D 4 HOH 17 25 25 HOH HOH A . D 4 HOH 18 26 26 HOH HOH A . D 4 HOH 19 27 27 HOH HOH A . D 4 HOH 20 28 28 HOH HOH A . D 4 HOH 21 29 29 HOH HOH A . D 4 HOH 22 30 30 HOH HOH A . D 4 HOH 23 31 31 HOH HOH A . D 4 HOH 24 32 32 HOH HOH A . D 4 HOH 25 33 33 HOH HOH A . D 4 HOH 26 34 34 HOH HOH A . D 4 HOH 27 35 35 HOH HOH A . D 4 HOH 28 36 36 HOH HOH A . D 4 HOH 29 37 37 HOH HOH A . D 4 HOH 30 38 38 HOH HOH A . D 4 HOH 31 39 39 HOH HOH A . D 4 HOH 32 40 40 HOH HOH A . D 4 HOH 33 41 41 HOH HOH A . D 4 HOH 34 42 42 HOH HOH A . D 4 HOH 35 43 43 HOH HOH A . D 4 HOH 36 44 44 HOH HOH A . D 4 HOH 37 45 45 HOH HOH A . D 4 HOH 38 46 46 HOH HOH A . D 4 HOH 39 47 47 HOH HOH A . D 4 HOH 40 48 48 HOH HOH A . D 4 HOH 41 49 49 HOH HOH A . D 4 HOH 42 50 50 HOH HOH A . D 4 HOH 43 51 51 HOH HOH A . D 4 HOH 44 52 52 HOH HOH A . D 4 HOH 45 53 53 HOH HOH A . D 4 HOH 46 54 54 HOH HOH A . D 4 HOH 47 55 55 HOH HOH A . D 4 HOH 48 56 56 HOH HOH A . D 4 HOH 49 57 57 HOH HOH A . D 4 HOH 50 58 58 HOH HOH A . D 4 HOH 51 59 59 HOH HOH A . D 4 HOH 52 60 60 HOH HOH A . D 4 HOH 53 61 61 HOH HOH A . D 4 HOH 54 62 62 HOH HOH A . D 4 HOH 55 63 63 HOH HOH A . D 4 HOH 56 64 64 HOH HOH A . D 4 HOH 57 65 65 HOH HOH A . D 4 HOH 58 66 66 HOH HOH A . D 4 HOH 59 67 67 HOH HOH A . D 4 HOH 60 68 68 HOH HOH A . D 4 HOH 61 69 69 HOH HOH A . D 4 HOH 62 70 70 HOH HOH A . D 4 HOH 63 71 71 HOH HOH A . D 4 HOH 64 72 72 HOH HOH A . D 4 HOH 65 73 73 HOH HOH A . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1D33 _cell.length_a 27.943 _cell.length_b 27.943 _cell.length_c 52.243 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1D33 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting tetragonal _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1D33 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 55.99 _exptl_crystal.density_Matthews 2.80 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details 'ROOM TEMPERATURE' _exptl_crystal_grow.pH 6.00 _exptl_crystal_grow.pdbx_details 'pH 6.00, VAPOR DIFFUSION' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 HCHO ? ? ? 1 4 1 BACL2 ? ? ? 1 5 1 'NA CACODYLATE' ? ? ? 1 6 1 SPERMINE ? ? ? 1 7 2 WATER ? ? ? 1 8 2 HCHO ? ? ? 1 9 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 298.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'RIGAKU AFC-5R' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1D33 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 3.000 _reflns.d_resolution_low ? _reflns.d_resolution_high 1.500 _reflns.number_obs ? _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1D33 _refine.ls_number_reflns_obs 2229 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 1.500 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.185 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 120 _refine_hist.pdbx_number_atoms_ligand 40 _refine_hist.number_atoms_solvent 65 _refine_hist.number_atoms_total 225 _refine_hist.d_res_high 1.500 _refine_hist.d_res_low . # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function n_bond_d 0.016 ? ? ? 'X-RAY DIFFRACTION' ? n_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1D33 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1D33 _struct.title 'Formaldehyde cross-links daunorubicin and DNA efficiently: HPLC and X-RAY diffraction studies' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1D33 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, MODIFIED, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1D33 _struct_ref.pdbx_db_accession 1D33 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1D33 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1D33 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 6 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4290 ? 1 MORE -1.1 ? 1 'SSA (A^2)' 1690 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 27.9430000000 -1.0000000000 0.0000000000 0.0000000000 27.9430000000 0.0000000000 0.0000000000 -1.0000000000 26.1215000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 3 "O3'" ? ? ? 1_555 A G49 4 P ? ? A DC 3 A G49 4 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale2 covale one ? A G49 4 "O3'" ? ? ? 1_555 A DC 5 P ? ? A G49 4 A DC 5 1_555 ? ? ? ? ? ? ? 1.633 ? ? covale3 covale none ? A G49 4 CM2 ? ? ? 1_555 B DM1 . "N3'" ? ? A G49 4 A DM1 7 1_555 ? ? ? ? ? ? ? 1.532 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 A G49 4 N1 ? ? A DC 3 A G49 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 A G49 4 O6 ? ? A DC 3 A G49 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 A G49 4 N2 ? ? A DC 3 A G49 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G49 4 N1 ? ? ? 1_555 A DC 3 N3 ? ? A G49 4 A DC 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G49 4 N2 ? ? ? 1_555 A DC 3 O2 ? ? A G49 4 A DC 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G49 4 O6 ? ? ? 1_555 A DC 3 N4 ? ? A G49 4 A DC 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A DM1 7 ? 12 'BINDING SITE FOR RESIDUE DM1 A 7' AC2 Software A MG 8 ? 5 'BINDING SITE FOR RESIDUE MG A 8' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 DC A 1 ? DC A 1 . ? 8_665 ? 2 AC1 12 DG A 2 ? DG A 2 . ? 8_665 ? 3 AC1 12 DC A 3 ? DC A 3 . ? 8_665 ? 4 AC1 12 G49 A 4 ? G49 A 4 . ? 1_555 ? 5 AC1 12 DC A 5 ? DC A 5 . ? 1_555 ? 6 AC1 12 DG A 6 ? DG A 6 . ? 1_555 ? 7 AC1 12 MG C . ? MG A 8 . ? 1_555 ? 8 AC1 12 HOH D . ? HOH A 29 . ? 1_555 ? 9 AC1 12 HOH D . ? HOH A 34 . ? 1_555 ? 10 AC1 12 HOH D . ? HOH A 36 . ? 1_555 ? 11 AC1 12 HOH D . ? HOH A 60 . ? 1_555 ? 12 AC1 12 HOH D . ? HOH A 71 . ? 1_555 ? 13 AC2 5 DG A 6 ? DG A 6 . ? 1_555 ? 14 AC2 5 DM1 B . ? DM1 A 7 . ? 1_555 ? 15 AC2 5 HOH D . ? HOH A 9 . ? 1_555 ? 16 AC2 5 HOH D . ? HOH A 10 . ? 1_555 ? 17 AC2 5 HOH D . ? HOH A 11 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 71 ? ? O A HOH 73 ? ? 1.45 2 1 O A HOH 71 ? ? O A HOH 72 ? ? 1.46 3 1 O A HOH 23 ? ? O A HOH 67 ? ? 1.96 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 42 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 56 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_454 _pdbx_validate_symm_contact.dist 2.01 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A DC 5 ? ? "O5'" A DC 5 ? ? 1.684 1.593 0.091 0.010 N 2 1 N3 A DC 5 ? ? C4 A DC 5 ? ? 1.379 1.335 0.044 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A DC 1 ? ? "O3'" A DC 1 ? ? P A DG 2 ? ? 130.99 119.70 11.29 1.20 Y 2 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 96.72 102.40 -5.68 0.80 N 3 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 114.82 108.30 6.52 0.30 N 4 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DC 3 ? ? 132.00 119.70 12.30 1.20 Y 5 1 C2 A DC 3 ? ? N3 A DC 3 ? ? C4 A DC 3 ? ? 123.49 119.90 3.59 0.50 N 6 1 N3 A DC 3 ? ? C4 A DC 3 ? ? C5 A DC 3 ? ? 118.73 121.90 -3.17 0.40 N 7 1 "C3'" A DC 5 ? ? "C2'" A DC 5 ? ? "C1'" A DC 5 ? ? 96.69 102.40 -5.71 0.80 N 8 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 118.18 108.30 9.88 0.30 N 9 1 "O3'" A DC 5 ? ? P A DG 6 ? ? OP1 A DG 6 ? ? 118.15 110.50 7.65 1.10 Y 10 1 C6 A DG 6 ? ? N1 A DG 6 ? ? C2 A DG 6 ? ? 121.44 125.10 -3.66 0.60 N 11 1 C5 A DG 6 ? ? C6 A DG 6 ? ? N1 A DG 6 ? ? 116.12 111.50 4.62 0.50 N 12 1 C5 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 124.44 128.60 -4.16 0.60 N # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id G49 _pdbx_struct_mod_residue.label_seq_id 4 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id G49 _pdbx_struct_mod_residue.auth_seq_id 4 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DG _pdbx_struct_mod_residue.details ? # _struct_site_keywords.site_id 1 _struct_site_keywords.text 'INTERCALATION, COVALENT' # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # _pdbx_entry_details.nonpolymer_details ;A METHYLENE GROUP LINKS THE N3* ATOM OF DAUNOMYCIN AND N2 G A 4. ; _pdbx_entry_details.entry_id 1D33 _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 DM1 C1 C Y N 72 DM1 C2 C Y N 73 DM1 C3 C Y N 74 DM1 C4 C Y N 75 DM1 O4 O N N 76 DM1 C5 C Y N 77 DM1 C6 C N N 78 DM1 O6 O N N 79 DM1 C7 C Y N 80 DM1 C8 C Y N 81 DM1 O8 O N N 82 DM1 C9 C Y N 83 DM1 C10 C N S 84 DM1 O10 O N N 85 DM1 C11 C N N 86 DM1 C12 C N S 87 DM1 O12 O N N 88 DM1 C13 C N N 89 DM1 O13 O N N 90 DM1 C14 C N N 91 DM1 C15 C N N 92 DM1 C16 C Y N 93 DM1 C17 C Y N 94 DM1 O17 O N N 95 DM1 C18 C Y N 96 DM1 C19 C N N 97 DM1 O19 O N N 98 DM1 C20 C Y N 99 DM1 C21 C N N 100 DM1 "C1'" C N R 101 DM1 "C2'" C N N 102 DM1 "C3'" C N S 103 DM1 "N3'" N N N 104 DM1 "C4'" C N S 105 DM1 "O4'" O N N 106 DM1 "C5'" C N S 107 DM1 "O5'" O N N 108 DM1 "C6'" C N N 109 DM1 H1 H N N 110 DM1 H2 H N N 111 DM1 H3 H N N 112 DM1 HO8 H N N 113 DM1 H10 H N N 114 DM1 H111 H N N 115 DM1 H112 H N N 116 DM1 HO12 H N N 117 DM1 H141 H N N 118 DM1 H142 H N N 119 DM1 H143 H N N 120 DM1 H151 H N N 121 DM1 H152 H N N 122 DM1 HO17 H N N 123 DM1 H211 H N N 124 DM1 H212 H N N 125 DM1 H213 H N N 126 DM1 "H1'" H N N 127 DM1 "H2'1" H N N 128 DM1 "H2'2" H N N 129 DM1 "H3'" H N N 130 DM1 "HN'1" H N N 131 DM1 "HN'2" H N N 132 DM1 "H4'" H N N 133 DM1 "HO4'" H N N 134 DM1 "H5'" H N N 135 DM1 "H6'1" H N N 136 DM1 "H6'2" H N N 137 DM1 "H6'3" H N N 138 G49 P P N N 139 G49 O1P O N N 140 G49 O2P O N N 141 G49 O3P O N N 142 G49 "O5'" O N N 143 G49 "C5'" C N N 144 G49 "C4'" C N R 145 G49 "O4'" O N N 146 G49 "C3'" C N S 147 G49 "O3'" O N N 148 G49 "C2'" C N N 149 G49 "C1'" C N R 150 G49 N9 N Y N 151 G49 C8 C Y N 152 G49 N7 N Y N 153 G49 C5 C Y N 154 G49 C6 C N N 155 G49 O6 O N N 156 G49 N1 N N N 157 G49 C2 C N N 158 G49 N2 N N N 159 G49 CM2 C N N 160 G49 N3 N N N 161 G49 C4 C Y N 162 G49 H2P H N N 163 G49 H3P H N N 164 G49 "H5'1" H N N 165 G49 "H5'2" H N N 166 G49 "H4'" H N N 167 G49 "H3'" H N N 168 G49 HA H N N 169 G49 "H2'1" H N N 170 G49 "H2'2" H N N 171 G49 "H1'" H N N 172 G49 H8 H N N 173 G49 H1 H N N 174 G49 H2 H N N 175 G49 HM21 H N N 176 G49 HM22 H N N 177 G49 HM23 H N N 178 HOH O O N N 179 HOH H1 H N N 180 HOH H2 H N N 181 MG MG MG N N 182 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 DM1 C1 C2 doub Y N 75 DM1 C1 C20 sing Y N 76 DM1 C1 H1 sing N N 77 DM1 C2 C3 sing Y N 78 DM1 C2 H2 sing N N 79 DM1 C3 C4 doub Y N 80 DM1 C3 H3 sing N N 81 DM1 C4 O4 sing N N 82 DM1 C4 C5 sing Y N 83 DM1 O4 C21 sing N N 84 DM1 C5 C6 sing N N 85 DM1 C5 C20 doub Y N 86 DM1 C6 O6 doub N N 87 DM1 C6 C7 sing N N 88 DM1 C7 C8 doub Y N 89 DM1 C7 C18 sing Y N 90 DM1 C8 O8 sing N N 91 DM1 C8 C9 sing Y N 92 DM1 O8 HO8 sing N N 93 DM1 C9 C10 sing N N 94 DM1 C9 C16 doub Y N 95 DM1 C10 O10 sing N N 96 DM1 C10 C11 sing N N 97 DM1 C10 H10 sing N N 98 DM1 O10 "C1'" sing N N 99 DM1 C11 C12 sing N N 100 DM1 C11 H111 sing N N 101 DM1 C11 H112 sing N N 102 DM1 C12 O12 sing N N 103 DM1 C12 C13 sing N N 104 DM1 C12 C15 sing N N 105 DM1 O12 HO12 sing N N 106 DM1 C13 O13 doub N N 107 DM1 C13 C14 sing N N 108 DM1 C14 H141 sing N N 109 DM1 C14 H142 sing N N 110 DM1 C14 H143 sing N N 111 DM1 C15 C16 sing N N 112 DM1 C15 H151 sing N N 113 DM1 C15 H152 sing N N 114 DM1 C16 C17 sing Y N 115 DM1 C17 O17 sing N N 116 DM1 C17 C18 doub Y N 117 DM1 O17 HO17 sing N N 118 DM1 C18 C19 sing N N 119 DM1 C19 O19 doub N N 120 DM1 C19 C20 sing N N 121 DM1 C21 H211 sing N N 122 DM1 C21 H212 sing N N 123 DM1 C21 H213 sing N N 124 DM1 "C1'" "C2'" sing N N 125 DM1 "C1'" "O5'" sing N N 126 DM1 "C1'" "H1'" sing N N 127 DM1 "C2'" "C3'" sing N N 128 DM1 "C2'" "H2'1" sing N N 129 DM1 "C2'" "H2'2" sing N N 130 DM1 "C3'" "N3'" sing N N 131 DM1 "C3'" "C4'" sing N N 132 DM1 "C3'" "H3'" sing N N 133 DM1 "N3'" "HN'1" sing N N 134 DM1 "N3'" "HN'2" sing N N 135 DM1 "C4'" "O4'" sing N N 136 DM1 "C4'" "C5'" sing N N 137 DM1 "C4'" "H4'" sing N N 138 DM1 "O4'" "HO4'" sing N N 139 DM1 "C5'" "O5'" sing N N 140 DM1 "C5'" "C6'" sing N N 141 DM1 "C5'" "H5'" sing N N 142 DM1 "C6'" "H6'1" sing N N 143 DM1 "C6'" "H6'2" sing N N 144 DM1 "C6'" "H6'3" sing N N 145 G49 P O1P doub N N 146 G49 P O2P sing N N 147 G49 P O3P sing N N 148 G49 P "O5'" sing N N 149 G49 O2P H2P sing N N 150 G49 O3P H3P sing N N 151 G49 "O5'" "C5'" sing N N 152 G49 "C5'" "C4'" sing N N 153 G49 "C5'" "H5'1" sing N N 154 G49 "C5'" "H5'2" sing N N 155 G49 "C4'" "O4'" sing N N 156 G49 "C4'" "C3'" sing N N 157 G49 "C4'" "H4'" sing N N 158 G49 "O4'" "C1'" sing N N 159 G49 "C3'" "O3'" sing N N 160 G49 "C3'" "C2'" sing N N 161 G49 "C3'" "H3'" sing N N 162 G49 "O3'" HA sing N N 163 G49 "C2'" "C1'" sing N N 164 G49 "C2'" "H2'1" sing N N 165 G49 "C2'" "H2'2" sing N N 166 G49 "C1'" N9 sing N N 167 G49 "C1'" "H1'" sing N N 168 G49 N9 C8 sing Y N 169 G49 N9 C4 sing Y N 170 G49 C8 N7 doub Y N 171 G49 C8 H8 sing N N 172 G49 N7 C5 sing Y N 173 G49 C5 C6 sing N N 174 G49 C5 C4 doub Y N 175 G49 C6 O6 doub N N 176 G49 C6 N1 sing N N 177 G49 N1 C2 sing N N 178 G49 N1 H1 sing N N 179 G49 C2 N2 sing N N 180 G49 C2 N3 doub N N 181 G49 N2 CM2 sing N N 182 G49 N2 H2 sing N N 183 G49 CM2 HM21 sing N N 184 G49 CM2 HM22 sing N N 185 G49 CM2 HM23 sing N N 186 G49 N3 C4 sing N N 187 HOH O H1 sing N N 188 HOH O H2 sing N N 189 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1D33 'double helix' 1D33 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 6 8_665 0.228 -0.166 -0.023 6.442 1.246 -2.380 1 A_DC1:DG6_A A 1 ? A 6 ? 19 1 1 A DG 2 1_555 A DC 5 8_665 -0.082 -0.187 -0.365 -15.149 0.972 0.770 2 A_DG2:DC5_A A 2 ? A 5 ? 19 1 1 A DC 3 1_555 A G49 4 8_665 0.262 -0.254 0.109 -3.218 -7.137 2.077 3 A_DC3:G494_A A 3 ? A 4 ? 19 1 1 A G49 4 1_555 A DC 3 8_665 -0.262 -0.254 0.109 3.218 -7.137 2.077 4 A_G494:DC3_A A 4 ? A 3 ? 19 1 1 A DC 5 1_555 A DG 2 8_665 0.082 -0.187 -0.365 15.149 0.972 0.770 5 A_DC5:DG2_A A 5 ? A 2 ? 19 1 1 A DG 6 1_555 A DC 1 8_665 -0.228 -0.166 -0.023 -6.442 1.246 -2.380 6 A_DG6:DC1_A A 6 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 6 8_665 A DG 2 1_555 A DC 5 8_665 1.234 1.127 6.982 1.725 -2.478 34.140 2.742 -1.516 6.937 -4.210 -2.931 34.269 1 AA_DC1DG2:DC5DG6_AA A 1 ? A 6 ? A 2 ? A 5 ? 1 A DG 2 1_555 A DC 5 8_665 A DC 3 1_555 A G49 4 8_665 -1.169 0.026 3.040 -3.898 -3.456 30.308 0.693 1.479 3.140 -6.549 7.387 30.742 2 AA_DG2DC3:G494DC5_AA A 2 ? A 5 ? A 3 ? A 4 ? 1 A DC 3 1_555 A G49 4 8_665 A G49 4 1_555 A DC 3 8_665 0.000 -0.037 3.189 0.000 7.730 36.180 -1.073 0.000 3.116 12.274 0.000 36.970 3 AA_DC3G494:DC3G494_AA A 3 ? A 4 ? A 4 ? A 3 ? 1 A G49 4 1_555 A DC 3 8_665 A DC 5 1_555 A DG 2 8_665 1.169 0.026 3.040 3.898 -3.456 30.308 0.693 -1.479 3.140 -6.549 -7.387 30.742 4 AA_G494DC5:DG2DC3_AA A 4 ? A 3 ? A 5 ? A 2 ? 1 A DC 5 1_555 A DG 2 8_665 A DG 6 1_555 A DC 1 8_665 -1.234 1.127 6.982 -1.725 -2.478 34.140 2.742 1.516 6.937 -4.210 2.931 34.269 5 AA_DC5DG6:DC1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ? # _atom_sites.entry_id 1D33 _atom_sites.fract_transf_matrix[1][1] 0.035787 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.035787 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019141 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DC A 1 1 ? 9.425 19.817 22.485 1.00 13.66 ? 1 DC A "O5'" 1 ATOM 2 C "C5'" . DC A 1 1 ? 9.590 20.946 23.373 1.00 12.53 ? 1 DC A "C5'" 1 ATOM 3 C "C4'" . DC A 1 1 ? 11.040 20.946 23.807 1.00 12.19 ? 1 DC A "C4'" 1 ATOM 4 O "O4'" . DC A 1 1 ? 11.267 19.826 24.612 1.00 11.65 ? 1 DC A "O4'" 1 ATOM 5 C "C3'" . DC A 1 1 ? 12.060 20.840 22.679 1.00 12.06 ? 1 DC A "C3'" 1 ATOM 6 O "O3'" . DC A 1 1 ? 13.175 21.695 22.872 1.00 12.82 ? 1 DC A "O3'" 1 ATOM 7 C "C2'" . DC A 1 1 ? 12.479 19.359 22.694 1.00 11.76 ? 1 DC A "C2'" 1 ATOM 8 C "C1'" . DC A 1 1 ? 12.351 19.018 24.173 1.00 10.68 ? 1 DC A "C1'" 1 ATOM 9 N N1 . DC A 1 1 ? 11.968 17.618 24.298 1.00 9.59 ? 1 DC A N1 1 ATOM 10 C C2 . DC A 1 1 ? 12.974 16.679 24.408 1.00 9.11 ? 1 DC A C2 1 ATOM 11 O O2 . DC A 1 1 ? 14.139 17.062 24.424 1.00 8.99 ? 1 DC A O2 1 ATOM 12 N N3 . DC A 1 1 ? 12.605 15.369 24.455 1.00 8.80 ? 1 DC A N3 1 ATOM 13 C C4 . DC A 1 1 ? 11.306 14.980 24.434 1.00 8.73 ? 1 DC A C4 1 ATOM 14 N N4 . DC A 1 1 ? 11.012 13.684 24.481 1.00 8.49 ? 1 DC A N4 1 ATOM 15 C C5 . DC A 1 1 ? 10.266 15.961 24.345 1.00 8.85 ? 1 DC A C5 1 ATOM 16 C C6 . DC A 1 1 ? 10.641 17.238 24.298 1.00 9.33 ? 1 DC A C6 1 ATOM 17 P P . DG A 1 2 ? 13.726 22.899 21.999 1.00 17.26 ? 2 DG A P 1 ATOM 18 O OP1 . DG A 1 2 ? 14.673 23.595 22.940 1.00 17.34 ? 2 DG A OP1 1 ATOM 19 O OP2 . DG A 1 2 ? 12.605 23.671 21.420 1.00 16.65 ? 2 DG A OP2 1 ATOM 20 O "O5'" . DG A 1 2 ? 14.514 22.097 20.814 1.00 13.46 ? 2 DG A "O5'" 1 ATOM 21 C "C5'" . DG A 1 2 ? 15.718 21.365 21.090 1.00 12.60 ? 2 DG A "C5'" 1 ATOM 22 C "C4'" . DG A 1 2 ? 16.056 20.614 19.831 1.00 12.44 ? 2 DG A "C4'" 1 ATOM 23 O "O4'" . DG A 1 2 ? 15.288 19.418 19.763 1.00 11.71 ? 2 DG A "O4'" 1 ATOM 24 C "C3'" . DG A 1 2 ? 15.766 21.349 18.531 1.00 12.44 ? 2 DG A "C3'" 1 ATOM 25 O "O3'" . DG A 1 2 ? 16.811 21.027 17.606 1.00 14.05 ? 2 DG A "O3'" 1 ATOM 26 C "C2'" . DG A 1 2 ? 14.433 20.770 18.107 1.00 11.91 ? 2 DG A "C2'" 1 ATOM 27 C "C1'" . DG A 1 2 ? 14.754 19.314 18.447 1.00 10.94 ? 2 DG A "C1'" 1 ATOM 28 N N9 . DG A 1 2 ? 13.572 18.473 18.332 1.00 9.99 ? 2 DG A N9 1 ATOM 29 C C8 . DG A 1 2 ? 12.253 18.800 18.301 1.00 9.67 ? 2 DG A C8 1 ATOM 30 N N7 . DG A 1 2 ? 11.451 17.783 18.160 1.00 9.67 ? 2 DG A N7 1 ATOM 31 C C5 . DG A 1 2 ? 12.309 16.679 18.066 1.00 9.15 ? 2 DG A C5 1 ATOM 32 C C6 . DG A 1 2 ? 12.060 15.307 17.878 1.00 8.96 ? 2 DG A C6 1 ATOM 33 O O6 . DG A 1 2 ? 10.965 14.729 17.789 1.00 9.23 ? 2 DG A O6 1 ATOM 34 N N1 . DG A 1 2 ? 13.186 14.525 17.867 1.00 8.47 ? 2 DG A N1 1 ATOM 35 C C2 . DG A 1 2 ? 14.435 15.059 17.977 1.00 8.30 ? 2 DG A C2 1 ATOM 36 N N2 . DG A 1 2 ? 15.458 14.201 17.951 1.00 7.81 ? 2 DG A N2 1 ATOM 37 N N3 . DG A 1 2 ? 14.709 16.350 18.118 1.00 8.65 ? 2 DG A N3 1 ATOM 38 C C4 . DG A 1 2 ? 13.606 17.087 18.160 1.00 9.29 ? 2 DG A C4 1 ATOM 39 P P . DC A 1 3 ? 17.881 21.930 16.854 1.00 21.18 ? 3 DC A P 1 ATOM 40 O OP1 . DC A 1 3 ? 18.406 23.084 17.595 1.00 19.46 ? 3 DC A OP1 1 ATOM 41 O OP2 . DC A 1 3 ? 16.861 22.360 15.741 1.00 21.64 ? 3 DC A OP2 1 ATOM 42 O "O5'" . DC A 1 3 ? 18.948 20.943 16.232 1.00 15.58 ? 3 DC A "O5'" 1 ATOM 43 C "C5'" . DC A 1 3 ? 19.946 20.228 17.016 1.00 14.87 ? 3 DC A "C5'" 1 ATOM 44 C "C4'" . DC A 1 3 ? 19.851 18.795 16.540 1.00 14.15 ? 3 DC A "C4'" 1 ATOM 45 O "O4'" . DC A 1 3 ? 18.512 18.325 16.665 1.00 13.89 ? 3 DC A "O4'" 1 ATOM 46 C "C3'" . DC A 1 3 ? 20.197 18.588 15.067 1.00 13.97 ? 3 DC A "C3'" 1 ATOM 47 O "O3'" . DC A 1 3 ? 21.544 18.261 14.936 1.00 14.04 ? 3 DC A "O3'" 1 ATOM 48 C "C2'" . DC A 1 3 ? 19.314 17.431 14.623 1.00 13.68 ? 3 DC A "C2'" 1 ATOM 49 C "C1'" . DC A 1 3 ? 18.375 17.202 15.725 1.00 13.22 ? 3 DC A "C1'" 1 ATOM 50 N N1 . DC A 1 3 ? 16.962 17.101 15.323 1.00 12.39 ? 3 DC A N1 1 ATOM 51 C C2 . DC A 1 3 ? 16.503 15.791 15.203 1.00 11.83 ? 3 DC A C2 1 ATOM 52 O O2 . DC A 1 3 ? 17.294 14.843 15.333 1.00 12.10 ? 3 DC A O2 1 ATOM 53 N N3 . DC A 1 3 ? 15.198 15.626 14.915 1.00 11.53 ? 3 DC A N3 1 ATOM 54 C C4 . DC A 1 3 ? 14.324 16.654 14.790 1.00 11.42 ? 3 DC A C4 1 ATOM 55 N N4 . DC A 1 3 ? 13.049 16.405 14.534 1.00 11.20 ? 3 DC A N4 1 ATOM 56 C C5 . DC A 1 3 ? 14.813 17.990 14.915 1.00 11.67 ? 3 DC A C5 1 ATOM 57 C C6 . DC A 1 3 ? 16.106 18.146 15.203 1.00 11.94 ? 3 DC A C6 1 HETATM 58 P P . G49 A 1 4 ? 22.243 18.049 13.500 1.00 16.37 ? 4 G49 A P 1 HETATM 59 O O1P . G49 A 1 4 ? 23.671 17.878 14.017 1.00 18.21 ? 4 G49 A O1P 1 HETATM 60 O O2P . G49 A 1 4 ? 21.709 18.954 12.549 1.00 17.12 ? 4 G49 A O2P 1 HETATM 61 O "O5'" . G49 A 1 4 ? 21.787 16.523 13.129 1.00 13.39 ? 4 G49 A "O5'" 1 HETATM 62 C "C5'" . G49 A 1 4 ? 22.352 15.416 13.818 1.00 12.63 ? 4 G49 A "C5'" 1 HETATM 63 C "C4'" . G49 A 1 4 ? 21.891 14.150 13.134 1.00 12.34 ? 4 G49 A "C4'" 1 HETATM 64 O "O4'" . G49 A 1 4 ? 20.491 14.014 13.108 1.00 11.97 ? 4 G49 A "O4'" 1 HETATM 65 C "C3'" . G49 A 1 4 ? 22.341 14.078 11.661 1.00 12.34 ? 4 G49 A "C3'" 1 HETATM 66 O "O3'" . G49 A 1 4 ? 22.715 12.717 11.363 1.00 13.36 ? 4 G49 A "O3'" 1 HETATM 67 C "C2'" . G49 A 1 4 ? 21.131 14.603 10.919 1.00 12.03 ? 4 G49 A "C2'" 1 HETATM 68 C "C1'" . G49 A 1 4 ? 20.032 13.966 11.713 1.00 11.20 ? 4 G49 A "C1'" 1 HETATM 69 N N9 . G49 A 1 4 ? 18.761 14.693 11.655 1.00 10.61 ? 4 G49 A N9 1 HETATM 70 C C8 . G49 A 1 4 ? 18.549 16.034 11.702 1.00 10.25 ? 4 G49 A C8 1 HETATM 71 N N7 . G49 A 1 4 ? 17.294 16.366 11.676 1.00 10.29 ? 4 G49 A N7 1 HETATM 72 C C5 . G49 A 1 4 ? 16.632 15.137 11.593 1.00 9.93 ? 4 G49 A C5 1 HETATM 73 C C6 . G49 A 1 4 ? 15.246 14.852 11.504 1.00 9.83 ? 4 G49 A C6 1 HETATM 74 O O6 . G49 A 1 4 ? 14.315 15.651 11.488 1.00 9.78 ? 4 G49 A O6 1 HETATM 75 N N1 . G49 A 1 4 ? 14.986 13.516 11.415 1.00 9.75 ? 4 G49 A N1 1 HETATM 76 C C2 . G49 A 1 4 ? 15.961 12.577 11.384 1.00 9.46 ? 4 G49 A C2 1 HETATM 77 N N2 . G49 A 1 4 ? 15.548 11.300 11.316 1.00 9.84 ? 4 G49 A N2 1 HETATM 78 C CM2 . G49 A 1 4 ? 16.674 10.386 11.279 1.00 9.99 ? 4 G49 A CM2 1 HETATM 79 N N3 . G49 A 1 4 ? 17.288 12.776 11.441 1.00 9.81 ? 4 G49 A N3 1 HETATM 80 C C4 . G49 A 1 4 ? 17.520 14.109 11.551 1.00 9.88 ? 4 G49 A C4 1 ATOM 81 P P . DC A 1 5 ? 23.542 12.432 9.984 1.00 17.12 ? 5 DC A P 1 ATOM 82 O OP1 . DC A 1 5 ? 24.185 11.110 10.213 1.00 18.18 ? 5 DC A OP1 1 ATOM 83 O OP2 . DC A 1 5 ? 24.149 13.661 9.566 1.00 15.89 ? 5 DC A OP2 1 ATOM 84 O "O5'" . DC A 1 5 ? 22.240 12.239 8.934 1.00 13.08 ? 5 DC A "O5'" 1 ATOM 85 C "C5'" . DC A 1 5 ? 21.513 11.001 9.106 1.00 12.09 ? 5 DC A "C5'" 1 ATOM 86 C "C4'" . DC A 1 5 ? 20.385 11.040 8.092 1.00 11.88 ? 5 DC A "C4'" 1 ATOM 87 O "O4'" . DC A 1 5 ? 19.353 11.879 8.631 1.00 11.42 ? 5 DC A "O4'" 1 ATOM 88 C "C3'" . DC A 1 5 ? 20.745 11.602 6.718 1.00 11.66 ? 5 DC A "C3'" 1 ATOM 89 O "O3'" . DC A 1 5 ? 20.130 10.884 5.637 1.00 12.30 ? 5 DC A "O3'" 1 ATOM 90 C "C2'" . DC A 1 5 ? 20.253 13.047 6.818 1.00 11.24 ? 5 DC A "C2'" 1 ATOM 91 C "C1'" . DC A 1 5 ? 18.957 12.742 7.607 1.00 10.58 ? 5 DC A "C1'" 1 ATOM 92 N N1 . DC A 1 5 ? 18.286 13.977 7.972 1.00 9.66 ? 5 DC A N1 1 ATOM 93 C C2 . DC A 1 5 ? 16.911 13.843 8.176 1.00 8.97 ? 5 DC A C2 1 ATOM 94 O O2 . DC A 1 5 ? 16.397 12.725 8.186 1.00 8.91 ? 5 DC A O2 1 ATOM 95 N N3 . DC A 1 5 ? 16.196 14.964 8.338 1.00 8.89 ? 5 DC A N3 1 ATOM 96 C C4 . DC A 1 5 ? 16.780 16.213 8.375 1.00 8.90 ? 5 DC A C4 1 ATOM 97 N N4 . DC A 1 5 ? 15.984 17.291 8.542 1.00 8.94 ? 5 DC A N4 1 ATOM 98 C C5 . DC A 1 5 ? 18.166 16.344 8.166 1.00 9.09 ? 5 DC A C5 1 ATOM 99 C C6 . DC A 1 5 ? 18.876 15.207 7.962 1.00 9.35 ? 5 DC A C6 1 ATOM 100 P P . DG A 1 6 ? 20.929 9.677 4.906 1.00 14.47 ? 6 DG A P 1 ATOM 101 O OP1 . DG A 1 6 ? 21.589 8.651 5.762 1.00 15.13 ? 6 DG A OP1 1 ATOM 102 O OP2 . DG A 1 6 ? 21.868 10.448 4.075 1.00 16.46 ? 6 DG A OP2 1 ATOM 103 O "O5'" . DG A 1 6 ? 19.770 8.925 4.112 1.00 10.44 ? 6 DG A "O5'" 1 ATOM 104 C "C5'" . DG A 1 6 ? 18.803 8.039 4.665 1.00 9.30 ? 6 DG A "C5'" 1 ATOM 105 C "C4'" . DG A 1 6 ? 17.856 7.584 3.594 1.00 9.16 ? 6 DG A "C4'" 1 ATOM 106 O "O4'" . DG A 1 6 ? 16.987 8.620 3.150 1.00 8.92 ? 6 DG A "O4'" 1 ATOM 107 C "C3'" . DG A 1 6 ? 18.554 7.070 2.314 1.00 8.95 ? 6 DG A "C3'" 1 ATOM 108 O "O3'" . DG A 1 6 ? 17.814 5.985 1.802 1.00 9.32 ? 6 DG A "O3'" 1 ATOM 109 C "C2'" . DG A 1 6 ? 18.591 8.313 1.452 1.00 8.59 ? 6 DG A "C2'" 1 ATOM 110 C "C1'" . DG A 1 6 ? 17.255 8.936 1.776 1.00 8.09 ? 6 DG A "C1'" 1 ATOM 111 N N9 . DG A 1 6 ? 17.347 10.389 1.729 1.00 7.54 ? 6 DG A N9 1 ATOM 112 C C8 . DG A 1 6 ? 18.431 11.205 1.776 1.00 7.18 ? 6 DG A C8 1 ATOM 113 N N7 . DG A 1 6 ? 18.127 12.460 1.745 1.00 7.53 ? 6 DG A N7 1 ATOM 114 C C5 . DG A 1 6 ? 16.735 12.488 1.661 1.00 7.03 ? 6 DG A C5 1 ATOM 115 C C6 . DG A 1 6 ? 15.793 13.552 1.609 1.00 6.71 ? 6 DG A C6 1 ATOM 116 O O6 . DG A 1 6 ? 16.090 14.740 1.599 1.00 7.24 ? 6 DG A O6 1 ATOM 117 N N1 . DG A 1 6 ? 14.480 13.189 1.546 1.00 6.95 ? 6 DG A N1 1 ATOM 118 C C2 . DG A 1 6 ? 14.100 11.870 1.567 1.00 6.67 ? 6 DG A C2 1 ATOM 119 N N2 . DG A 1 6 ? 12.795 11.638 1.499 1.00 6.99 ? 6 DG A N2 1 ATOM 120 N N3 . DG A 1 6 ? 14.941 10.836 1.609 1.00 6.91 ? 6 DG A N3 1 ATOM 121 C C4 . DG A 1 6 ? 16.229 11.216 1.677 1.00 7.06 ? 6 DG A C4 1 HETATM 122 C C1 . DM1 B 2 . ? 15.263 18.283 5.005 1.00 9.43 ? 7 DM1 A C1 1 HETATM 123 C C2 . DM1 B 2 . ? 16.419 19.018 5.052 1.00 9.78 ? 7 DM1 A C2 1 HETATM 124 C C3 . DM1 B 2 . ? 17.747 18.367 5.057 1.00 10.12 ? 7 DM1 A C3 1 HETATM 125 C C4 . DM1 B 2 . ? 17.786 16.911 5.015 1.00 9.62 ? 7 DM1 A C4 1 HETATM 126 O O4 . DM1 B 2 . ? 18.870 16.174 4.979 1.00 10.17 ? 7 DM1 A O4 1 HETATM 127 C C5 . DM1 B 2 . ? 16.512 16.263 4.979 1.00 9.33 ? 7 DM1 A C5 1 HETATM 128 C C6 . DM1 B 2 . ? 16.537 14.768 4.916 1.00 8.69 ? 7 DM1 A C6 1 HETATM 129 O O6 . DM1 B 2 . ? 17.532 14.039 4.895 1.00 9.32 ? 7 DM1 A O6 1 HETATM 130 C C7 . DM1 B 2 . ? 15.243 14.069 4.911 1.00 8.47 ? 7 DM1 A C7 1 HETATM 131 C C8 . DM1 B 2 . ? 15.260 12.681 4.885 1.00 8.31 ? 7 DM1 A C8 1 HETATM 132 O O8 . DM1 B 2 . ? 16.350 11.921 4.906 1.00 8.57 ? 7 DM1 A O8 1 HETATM 133 C C9 . DM1 B 2 . ? 14.022 12.016 4.827 1.00 8.52 ? 7 DM1 A C9 1 HETATM 134 C C10 . DM1 B 2 . ? 14.067 10.442 4.869 1.00 9.15 ? 7 DM1 A C10 1 HETATM 135 O O10 . DM1 B 2 . ? 14.681 10.230 6.217 1.00 9.85 ? 7 DM1 A O10 1 HETATM 136 C C11 . DM1 B 2 . ? 12.731 9.822 4.744 1.00 9.39 ? 7 DM1 A C11 1 HETATM 137 C C12 . DM1 B 2 . ? 11.560 10.565 5.303 1.00 9.58 ? 7 DM1 A C12 1 HETATM 138 O O12 . DM1 B 2 . ? 11.644 10.655 6.776 1.00 9.84 ? 7 DM1 A O12 1 HETATM 139 C C13 . DM1 B 2 . ? 10.247 9.864 5.068 1.00 9.92 ? 7 DM1 A C13 1 HETATM 140 O O13 . DM1 B 2 . ? 9.649 10.141 4.023 1.00 11.07 ? 7 DM1 A O13 1 HETATM 141 C C14 . DM1 B 2 . ? 9.598 8.858 6.045 1.00 10.53 ? 7 DM1 A C14 1 HETATM 142 C C15 . DM1 B 2 . ? 11.462 12.044 4.796 1.00 9.05 ? 7 DM1 A C15 1 HETATM 143 C C16 . DM1 B 2 . ? 12.778 12.650 4.832 1.00 8.51 ? 7 DM1 A C16 1 HETATM 144 C C17 . DM1 B 2 . ? 12.812 14.067 4.848 1.00 8.16 ? 7 DM1 A C17 1 HETATM 145 O O17 . DM1 B 2 . ? 11.636 14.782 4.812 1.00 8.52 ? 7 DM1 A O17 1 HETATM 146 C C18 . DM1 B 2 . ? 13.960 14.838 4.895 1.00 8.40 ? 7 DM1 A C18 1 HETATM 147 C C19 . DM1 B 2 . ? 13.994 16.288 4.921 1.00 8.59 ? 7 DM1 A C19 1 HETATM 148 O O19 . DM1 B 2 . ? 12.994 17.006 4.911 1.00 9.07 ? 7 DM1 A O19 1 HETATM 149 C C20 . DM1 B 2 . ? 15.304 16.900 4.953 1.00 8.93 ? 7 DM1 A C20 1 HETATM 150 C C21 . DM1 B 2 . ? 20.214 16.819 5.141 1.00 10.64 ? 7 DM1 A C21 1 HETATM 151 C "C1'" . DM1 B 2 . ? 15.654 9.249 6.405 1.00 10.20 ? 7 DM1 A "C1'" 1 HETATM 152 C "C2'" . DM1 B 2 . ? 16.674 9.615 7.450 1.00 10.21 ? 7 DM1 A "C2'" 1 HETATM 153 C "C3'" . DM1 B 2 . ? 15.981 9.777 8.813 1.00 10.49 ? 7 DM1 A "C3'" 1 HETATM 154 N "N3'" . DM1 B 2 . ? 17.093 10.034 9.848 1.00 10.43 ? 7 DM1 A "N3'" 1 HETATM 155 C "C4'" . DM1 B 2 . ? 15.196 8.489 9.132 1.00 10.65 ? 7 DM1 A "C4'" 1 HETATM 156 O "O4'" . DM1 B 2 . ? 16.176 7.399 9.284 1.00 11.32 ? 7 DM1 A "O4'" 1 HETATM 157 C "C5'" . DM1 B 2 . ? 14.139 8.257 8.066 1.00 10.59 ? 7 DM1 A "C5'" 1 HETATM 158 O "O5'" . DM1 B 2 . ? 14.922 7.995 6.765 1.00 10.38 ? 7 DM1 A "O5'" 1 HETATM 159 C "C6'" . DM1 B 2 . ? 13.301 6.975 8.166 1.00 10.62 ? 7 DM1 A "C6'" 1 HETATM 160 MG MG . MG C 3 . ? 19.784 14.421 2.643 1.00 23.36 ? 8 MG A MG 1 HETATM 161 O O . HOH D 4 . ? 18.146 16.459 1.285 1.00 28.11 ? 9 HOH A O 1 HETATM 162 O O . HOH D 4 . ? 22.047 13.298 3.814 1.00 30.61 ? 10 HOH A O 1 HETATM 163 O O . HOH D 4 . ? 21.293 15.782 0.899 1.00 31.42 ? 11 HOH A O 1 HETATM 164 O O . HOH D 4 . ? 16.355 19.309 11.843 1.00 27.60 ? 12 HOH A O 1 HETATM 165 O O . HOH D 4 . ? 11.091 18.076 11.222 1.00 33.85 ? 13 HOH A O 1 HETATM 166 O O . HOH D 4 . ? 22.631 15.251 7.617 1.00 36.88 ? 14 HOH A O 1 HETATM 167 O O . HOH D 4 . ? 9.967 5.209 7.194 1.00 25.29 ? 15 HOH A O 1 HETATM 168 O O . HOH D 4 . ? 8.975 12.038 1.656 1.00 33.24 ? 16 HOH A O 1 HETATM 169 O O . HOH D 4 . ? 11.588 9.397 1.113 1.00 37.78 ? 17 HOH A O 1 HETATM 170 O O . HOH D 4 . ? 13.891 7.967 1.212 1.00 33.91 ? 18 HOH A O 1 HETATM 171 O O . HOH D 4 . ? 17.241 19.817 9.022 1.00 25.48 ? 19 HOH A O 1 HETATM 172 O O . HOH D 4 . ? 14.011 19.401 1.546 1.00 35.54 ? 20 HOH A O 1 HETATM 173 O O . HOH D 4 . ? 20.270 19.474 8.375 1.00 47.77 ? 21 HOH A O 1 HETATM 174 O O . HOH D 4 . ? 24.042 14.497 5.256 1.00 47.18 ? 22 HOH A O 1 HETATM 175 O O . HOH D 4 . ? 21.625 10.060 1.437 1.00 32.88 ? 23 HOH A O 1 HETATM 176 O O . HOH D 4 . ? 22.223 17.730 8.719 1.00 40.17 ? 24 HOH A O 1 HETATM 177 O O . HOH D 4 . ? 13.647 18.507 11.467 1.00 21.09 ? 25 HOH A O 1 HETATM 178 O O . HOH D 4 . ? 6.055 16.774 7.272 1.00 25.88 ? 26 HOH A O 1 HETATM 179 O O . HOH D 4 . ? 10.982 3.800 9.257 1.00 33.48 ? 27 HOH A O 1 HETATM 180 O O . HOH D 4 . ? 6.877 18.498 10.161 1.00 50.44 ? 28 HOH A O 1 HETATM 181 O O . HOH D 4 . ? 19.085 8.453 10.292 1.00 17.51 ? 29 HOH A O 1 HETATM 182 O O . HOH D 4 . ? 13.974 21.416 3.025 1.00 45.47 ? 30 HOH A O 1 HETATM 183 O O . HOH D 4 . ? 21.100 7.430 8.009 1.00 31.67 ? 31 HOH A O 1 HETATM 184 O O . HOH D 4 . ? 19.957 9.892 12.329 1.00 41.78 ? 32 HOH A O 1 HETATM 185 O O . HOH D 4 . ? 19.289 21.287 12.162 1.00 46.81 ? 33 HOH A O 1 HETATM 186 O O . HOH D 4 . ? 15.626 4.585 10.428 1.00 39.07 ? 34 HOH A O 1 HETATM 187 O O . HOH D 4 . ? 9.791 18.758 6.013 1.00 54.07 ? 35 HOH A O 1 HETATM 188 O O . HOH D 4 . ? 16.992 6.282 11.964 1.00 39.81 ? 36 HOH A O 1 HETATM 189 O O . HOH D 4 . ? 10.330 3.513 2.001 1.00 49.45 ? 37 HOH A O 1 HETATM 190 O O . HOH D 4 . ? 9.786 20.731 2.194 1.00 39.61 ? 38 HOH A O 1 HETATM 191 O O . HOH D 4 . ? 9.436 20.287 11.666 1.00 50.14 ? 39 HOH A O 1 HETATM 192 O O . HOH D 4 . ? 9.364 16.299 12.005 1.00 41.35 ? 40 HOH A O 1 HETATM 193 O O . HOH D 4 . ? 24.329 8.701 9.143 1.00 43.50 ? 41 HOH A O 1 HETATM 194 O O . HOH D 4 . ? 6.108 11.935 1.134 1.00 47.04 ? 42 HOH A O 1 HETATM 195 O O . HOH D 4 . ? 28.987 16.285 12.983 1.00 55.56 ? 43 HOH A O 1 HETATM 196 O O . HOH D 4 . ? 26.305 9.928 12.220 1.00 51.94 ? 44 HOH A O 1 HETATM 197 O O . HOH D 4 . ? 26.739 13.516 11.561 1.00 43.35 ? 45 HOH A O 1 HETATM 198 O O . HOH D 4 . ? 14.170 2.817 6.786 1.00 50.83 ? 46 HOH A O 1 HETATM 199 O O . HOH D 4 . ? 24.741 9.439 6.159 1.00 41.68 ? 47 HOH A O 1 HETATM 200 O O . HOH D 4 . ? 13.438 21.804 10.668 1.00 47.27 ? 48 HOH A O 1 HETATM 201 O O . HOH D 4 . ? 27.255 11.823 3.924 1.00 49.24 ? 49 HOH A O 1 HETATM 202 O O . HOH D 4 . ? 14.005 24.263 5.224 1.00 42.56 ? 50 HOH A O 1 HETATM 203 O O . HOH D 4 . ? 28.580 13.611 14.476 1.00 53.13 ? 51 HOH A O 1 HETATM 204 O O . HOH D 4 . ? 26.079 16.506 9.654 1.00 47.28 ? 52 HOH A O 1 HETATM 205 O O . HOH D 4 . ? 10.208 19.513 8.641 1.00 43.37 ? 53 HOH A O 1 HETATM 206 O O . HOH D 4 . ? 24.646 17.146 3.809 1.00 45.72 ? 54 HOH A O 1 HETATM 207 O O . HOH D 4 . ? 24.030 6.080 10.961 1.00 46.27 ? 55 HOH A O 1 HETATM 208 O O . HOH D 4 . ? 3.230 19.572 12.654 1.00 50.94 ? 56 HOH A O 1 HETATM 209 O O . HOH D 4 . ? 25.823 16.009 14.085 1.00 50.38 ? 57 HOH A O 1 HETATM 210 O O . HOH D 4 . ? 12.806 19.882 8.803 1.00 40.25 ? 58 HOH A O 1 HETATM 211 O O . HOH D 4 . ? 12.024 23.084 8.395 1.00 47.68 ? 59 HOH A O 1 HETATM 212 O O . HOH D 4 . ? 18.795 6.365 8.197 1.00 43.05 ? 60 HOH A O 1 HETATM 213 O O . HOH D 4 . ? 16.950 5.510 6.478 1.00 44.29 ? 61 HOH A O 1 HETATM 214 O O . HOH D 4 . ? 23.989 13.846 1.400 1.00 48.55 ? 62 HOH A O 1 HETATM 215 O O . HOH D 4 . ? 19.546 21.977 19.983 1.00 36.83 ? 63 HOH A O 1 HETATM 216 O O . HOH D 4 . ? 7.212 19.577 6.421 1.00 41.10 ? 64 HOH A O 1 HETATM 217 O O . HOH D 4 . ? 11.337 24.143 6.118 1.00 48.26 ? 65 HOH A O 1 HETATM 218 O O . HOH D 4 . ? 21.997 18.348 1.729 1.00 45.14 ? 66 HOH A O 1 HETATM 219 O O . HOH D 4 . ? 21.855 11.770 0.507 1.00 44.12 ? 67 HOH A O 1 HETATM 220 O O . HOH D 4 . ? 14.128 21.105 14.043 1.00 44.36 ? 68 HOH A O 1 HETATM 221 O O . HOH D 4 . ? 25.433 10.898 1.980 1.00 42.46 ? 69 HOH A O 1 HETATM 222 O O . HOH D 4 . ? 11.535 20.326 4.744 1.00 41.18 ? 70 HOH A O 1 HETATM 223 O O . HOH D 4 . ? 13.354 6.692 4.671 1.00 52.77 ? 71 HOH A O 1 HETATM 224 O O . HOH D 4 . ? 12.281 5.714 4.775 1.00 52.73 ? 72 HOH A O 1 HETATM 225 O O . HOH D 4 . ? 14.598 6.326 4.017 1.00 52.72 ? 73 HOH A O 1 #