data_1DNS # _entry.id 1DNS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1DNS pdb_00001dns 10.2210/pdb1dns/pdb RCSB ADH014 ? ? WWPDB D_1000172864 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1990-04-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DNS _pdbx_database_status.recvd_initial_deposition_date 1989-02-22 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jain, S.C.' 1 'Zon, G.' 2 'Sundaralingam, M.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Base only binding of spermine in the deep groove of the A-DNA octamer d(GTGTACAC).' Biochemistry 28 2360 2364 1989 BICHAW US 0006-2960 0033 ? 2730868 10.1021/bi00432a002 1 'The Potentially Z-DNA-Forming Sequence d(GTGTACAC) Crystallizes as A-DNA' J.Mol.Biol. 197 141 145 1987 JMOBAK UK 0022-2836 0070 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jain, S.' 1 ? primary 'Zon, G.' 2 ? primary 'Sundaralingam, M.' 3 ? 1 'Jain, S.' 4 ? 1 'Zon, G.' 5 ? 1 'Sundaralingam, M.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*TP*GP*TP*AP*CP*AP*C)-3') ; 2426.617 1 ? ? ? ? 2 non-polymer syn SPERMINE 202.340 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DT)(DG)(DT)(DA)(DC)(DA)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GTGTACAC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name SPERMINE _pdbx_entity_nonpoly.comp_id SPM # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DT n 1 3 DG n 1 4 DT n 1 5 DA n 1 6 DC n 1 7 DA n 1 8 DC n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DT 2 2 2 DT T A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DC 8 8 8 DC C A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id SPM _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 9 _pdbx_nonpoly_scheme.auth_seq_num 9 _pdbx_nonpoly_scheme.pdb_mon_id SPM _pdbx_nonpoly_scheme.auth_mon_id SPM _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A SPM 9 ? C8 ? B SPM 1 C8 2 1 N 1 A SPM 9 ? C9 ? B SPM 1 C9 3 1 N 1 A SPM 9 ? N10 ? B SPM 1 N10 4 1 N 1 A SPM 9 ? C11 ? B SPM 1 C11 5 1 N 1 A SPM 9 ? C12 ? B SPM 1 C12 6 1 N 1 A SPM 9 ? C13 ? B SPM 1 C13 7 1 N 1 A SPM 9 ? N14 ? B SPM 1 N14 # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1DNS _cell.length_a 42.430 _cell.length_b 42.430 _cell.length_c 24.750 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DNS _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # _exptl.entry_id 1DNS _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.30 _exptl_crystal.density_percent_sol 46.41 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details 'VAPOR DIFFUSION' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 MGCL2 ? ? ? 1 4 1 SPERMINE ? ? ? 1 5 2 WATER ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 277.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'OSCILLATION CAMERA' _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'ELLIOTT GX-6' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1DNS _reflns.observed_criterion_sigma_I 3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high 2.000 _reflns.number_obs 1365 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1DNS _refine.ls_number_reflns_obs 1214 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 5.000 _refine.ls_d_res_high 2.000 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.1150000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 161 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 168 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 5.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function n_bond_d 0.010 ? ? ? 'X-RAY DIFFRACTION' ? n_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1DNS _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1DNS _struct.title 'BASE ONLY BINDING OF SPERMINE IN THE DEEP GROOVE OF THE A-DNA OCTAMER D(GTGTACAC)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DNS _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'A-DNA, DOUBLE HELIX, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1DNS _struct_ref.pdbx_db_accession 1DNS _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1DNS _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1DNS _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 A DA 7 N1 ? ? A DT 2 A DA 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 A DA 7 N6 ? ? A DT 2 A DA 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 3 A DC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 3 A DC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 3 A DC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 5 N1 ? ? A DT 4 A DA 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 5 N6 ? ? A DT 4 A DA 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A DT 4 N3 ? ? A DA 5 A DT 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 5 A DT 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N1 ? ? ? 1_555 A DT 2 N3 ? ? A DA 7 A DT 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A DT 2 O4 ? ? A DA 7 A DT 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id SPM _struct_site.pdbx_auth_seq_id 9 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE SPM A 9' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 DT A 2 ? DT A 2 . ? 1_555 ? 2 AC1 4 DG A 3 ? DG A 3 . ? 1_555 ? 3 AC1 4 DT A 4 ? DT A 4 . ? 1_555 ? 4 AC1 4 DC A 6 ? DC A 6 . ? 7_555 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 C7 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 SPM _pdbx_validate_symm_contact.auth_seq_id_1 9 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 C7 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 SPM _pdbx_validate_symm_contact.auth_seq_id_2 9 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 7_555 _pdbx_validate_symm_contact.dist 1.55 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 P A DT 4 ? ? OP2 A DT 4 ? ? 1.380 1.485 -0.105 0.017 N 2 1 P A DA 7 ? ? "O5'" A DA 7 ? ? 1.705 1.593 0.112 0.010 N 3 1 P A DC 8 ? ? "O5'" A DC 8 ? ? 1.522 1.593 -0.071 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C5 A DG 1 ? ? C6 A DG 1 ? ? N1 A DG 1 ? ? 114.78 111.50 3.28 0.50 N 2 1 C5 A DG 1 ? ? C6 A DG 1 ? ? O6 A DG 1 ? ? 124.19 128.60 -4.41 0.60 N 3 1 "C3'" A DG 1 ? ? "O3'" A DG 1 ? ? P A DT 2 ? ? 127.26 119.70 7.56 1.20 Y 4 1 OP1 A DT 2 ? ? P A DT 2 ? ? OP2 A DT 2 ? ? 106.35 119.60 -13.25 1.50 N 5 1 "O5'" A DT 2 ? ? P A DT 2 ? ? OP1 A DT 2 ? ? 123.23 110.70 12.53 1.20 N 6 1 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.44 108.30 3.14 0.30 N 7 1 N1 A DT 2 ? ? C2 A DT 2 ? ? N3 A DT 2 ? ? 118.24 114.60 3.64 0.60 N 8 1 C2 A DT 2 ? ? N3 A DT 2 ? ? C4 A DT 2 ? ? 121.71 127.20 -5.49 0.60 N 9 1 N3 A DT 2 ? ? C4 A DT 2 ? ? C5 A DT 2 ? ? 119.00 115.20 3.80 0.60 N 10 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.25 108.30 3.95 0.30 N 11 1 N3 A DG 3 ? ? C2 A DG 3 ? ? N2 A DG 3 ? ? 113.38 119.90 -6.52 0.70 N 12 1 "C3'" A DG 3 ? ? "O3'" A DG 3 ? ? P A DT 4 ? ? 129.34 119.70 9.64 1.20 Y 13 1 "O5'" A DT 4 ? ? P A DT 4 ? ? OP1 A DT 4 ? ? 98.45 105.70 -7.25 0.90 N 14 1 "O5'" A DT 4 ? ? P A DT 4 ? ? OP2 A DT 4 ? ? 126.24 110.70 15.54 1.20 N 15 1 "O5'" A DT 4 ? ? "C5'" A DT 4 ? ? "C4'" A DT 4 ? ? 103.77 109.40 -5.63 0.80 N 16 1 N1 A DT 4 ? ? C2 A DT 4 ? ? N3 A DT 4 ? ? 119.06 114.60 4.46 0.60 N 17 1 C2 A DT 4 ? ? N3 A DT 4 ? ? C4 A DT 4 ? ? 121.08 127.20 -6.12 0.60 N 18 1 N3 A DT 4 ? ? C4 A DT 4 ? ? C5 A DT 4 ? ? 119.69 115.20 4.49 0.60 N 19 1 N1 A DT 4 ? ? C2 A DT 4 ? ? O2 A DT 4 ? ? 117.94 123.10 -5.16 0.80 N 20 1 C5 A DT 4 ? ? C4 A DT 4 ? ? O4 A DT 4 ? ? 118.27 124.90 -6.63 0.70 N 21 1 "O3'" A DT 4 ? ? P A DA 5 ? ? OP2 A DA 5 ? ? 121.84 110.50 11.34 1.10 Y 22 1 N1 A DA 5 ? ? C2 A DA 5 ? ? N3 A DA 5 ? ? 125.96 129.30 -3.34 0.50 N 23 1 "O3'" A DC 6 ? ? P A DA 7 ? ? OP2 A DA 7 ? ? 117.94 110.50 7.44 1.10 Y 24 1 "O5'" A DA 7 ? ? P A DA 7 ? ? OP2 A DA 7 ? ? 99.78 105.70 -5.92 0.90 N 25 1 "O5'" A DA 7 ? ? "C5'" A DA 7 ? ? "C4'" A DA 7 ? ? 103.46 109.40 -5.94 0.80 N 26 1 C6 A DA 7 ? ? N1 A DA 7 ? ? C2 A DA 7 ? ? 122.68 118.60 4.08 0.60 N 27 1 N1 A DA 7 ? ? C2 A DA 7 ? ? N3 A DA 7 ? ? 125.57 129.30 -3.73 0.50 N 28 1 C5 A DA 7 ? ? C6 A DA 7 ? ? N1 A DA 7 ? ? 114.28 117.70 -3.42 0.50 N 29 1 "O5'" A DC 8 ? ? P A DC 8 ? ? OP2 A DC 8 ? ? 120.74 110.70 10.04 1.20 N 30 1 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 112.11 108.30 3.81 0.30 N 31 1 N3 A DC 8 ? ? C4 A DC 8 ? ? C5 A DC 8 ? ? 118.71 121.90 -3.19 0.40 N # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ATOMS OF ONE STRAND' TR isotropic 'X-RAY DIFFRACTION' 'HALF SPERMINE' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ATOMS OF ONE STRAND' fix 'X-RAY DIFFRACTION' 'HALF SPERMINE' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 SPM N1 N N N 144 SPM C2 C N N 145 SPM C3 C N N 146 SPM C4 C N N 147 SPM N5 N N N 148 SPM C6 C N N 149 SPM C7 C N N 150 SPM C8 C N N 151 SPM C9 C N N 152 SPM N10 N N N 153 SPM C11 C N N 154 SPM C12 C N N 155 SPM C13 C N N 156 SPM N14 N N N 157 SPM HN11 H N N 158 SPM HN12 H N N 159 SPM H21 H N N 160 SPM H22 H N N 161 SPM H31 H N N 162 SPM H32 H N N 163 SPM H41 H N N 164 SPM H42 H N N 165 SPM HN5 H N N 166 SPM H61 H N N 167 SPM H62 H N N 168 SPM H71 H N N 169 SPM H72 H N N 170 SPM H81 H N N 171 SPM H82 H N N 172 SPM H91 H N N 173 SPM H92 H N N 174 SPM HN0 H N N 175 SPM H111 H N N 176 SPM H112 H N N 177 SPM H121 H N N 178 SPM H122 H N N 179 SPM H131 H N N 180 SPM H132 H N N 181 SPM HN41 H N N 182 SPM HN42 H N N 183 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 SPM N1 C2 sing N N 150 SPM N1 HN11 sing N N 151 SPM N1 HN12 sing N N 152 SPM C2 C3 sing N N 153 SPM C2 H21 sing N N 154 SPM C2 H22 sing N N 155 SPM C3 C4 sing N N 156 SPM C3 H31 sing N N 157 SPM C3 H32 sing N N 158 SPM C4 N5 sing N N 159 SPM C4 H41 sing N N 160 SPM C4 H42 sing N N 161 SPM N5 C6 sing N N 162 SPM N5 HN5 sing N N 163 SPM C6 C7 sing N N 164 SPM C6 H61 sing N N 165 SPM C6 H62 sing N N 166 SPM C7 C8 sing N N 167 SPM C7 H71 sing N N 168 SPM C7 H72 sing N N 169 SPM C8 C9 sing N N 170 SPM C8 H81 sing N N 171 SPM C8 H82 sing N N 172 SPM C9 N10 sing N N 173 SPM C9 H91 sing N N 174 SPM C9 H92 sing N N 175 SPM N10 C11 sing N N 176 SPM N10 HN0 sing N N 177 SPM C11 C12 sing N N 178 SPM C11 H111 sing N N 179 SPM C11 H112 sing N N 180 SPM C12 C13 sing N N 181 SPM C12 H121 sing N N 182 SPM C12 H122 sing N N 183 SPM C13 N14 sing N N 184 SPM C13 H131 sing N N 185 SPM C13 H132 sing N N 186 SPM N14 HN41 sing N N 187 SPM N14 HN42 sing N N 188 # _ndb_struct_conf_na.entry_id 1DNS _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 8 7_555 -0.378 -0.175 -0.048 -11.161 -11.808 -1.866 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1 1 A DT 2 1_555 A DA 7 7_555 -0.040 -0.047 0.173 -0.764 -10.255 1.125 2 A_DT2:DA7_A A 2 ? A 7 ? 20 1 1 A DG 3 1_555 A DC 6 7_555 -0.334 -0.201 0.171 -4.570 -13.832 -0.799 3 A_DG3:DC6_A A 3 ? A 6 ? 19 1 1 A DT 4 1_555 A DA 5 7_555 -0.176 -0.181 0.342 -5.135 -7.670 -4.193 4 A_DT4:DA5_A A 4 ? A 5 ? 20 1 1 A DA 5 1_555 A DT 4 7_555 0.176 -0.181 0.342 5.135 -7.669 -4.193 5 A_DA5:DT4_A A 5 ? A 4 ? 20 1 1 A DC 6 1_555 A DG 3 7_555 0.334 -0.201 0.171 4.570 -13.832 -0.799 6 A_DC6:DG3_A A 6 ? A 3 ? 19 1 1 A DA 7 1_555 A DT 2 7_555 0.040 -0.047 0.173 0.764 -10.255 1.125 7 A_DA7:DT2_A A 7 ? A 2 ? 20 1 1 A DC 8 1_555 A DG 1 7_555 0.378 -0.175 -0.048 11.161 -11.808 -1.866 8 A_DC8:DG1_A A 8 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 8 7_555 A DT 2 1_555 A DA 7 7_555 0.359 -1.248 3.190 -0.764 7.175 32.340 -3.319 -0.750 2.846 12.685 1.350 33.114 1 AA_DG1DT2:DA7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ? 1 A DT 2 1_555 A DA 7 7_555 A DG 3 1_555 A DC 6 7_555 0.376 -1.471 3.329 1.729 9.468 28.926 -4.601 -0.387 2.739 18.325 -3.347 30.453 2 AA_DT2DG3:DC6DA7_AA A 2 ? A 7 ? A 3 ? A 6 ? 1 A DG 3 1_555 A DC 6 7_555 A DT 4 1_555 A DA 5 7_555 -0.214 -1.524 3.272 -0.626 5.820 36.681 -3.144 0.255 3.007 9.175 0.987 37.130 3 AA_DG3DT4:DA5DC6_AA A 3 ? A 6 ? A 4 ? A 5 ? 1 A DT 4 1_555 A DA 5 7_555 A DA 5 1_555 A DT 4 7_555 0.000 -1.421 2.974 0.000 3.020 29.980 -3.280 0.000 2.821 5.820 0.000 30.128 4 AA_DT4DA5:DT4DA5_AA A 4 ? A 5 ? A 5 ? A 4 ? 1 A DA 5 1_555 A DT 4 7_555 A DC 6 1_555 A DG 3 7_555 0.214 -1.524 3.272 0.626 5.820 36.681 -3.144 -0.255 3.007 9.175 -0.987 37.130 5 AA_DA5DC6:DG3DT4_AA A 5 ? A 4 ? A 6 ? A 3 ? 1 A DC 6 1_555 A DG 3 7_555 A DA 7 1_555 A DT 2 7_555 -0.376 -1.471 3.329 -1.729 9.468 28.926 -4.601 0.387 2.739 18.325 3.347 30.453 6 AA_DC6DA7:DT2DG3_AA A 6 ? A 3 ? A 7 ? A 2 ? 1 A DA 7 1_555 A DT 2 7_555 A DC 8 1_555 A DG 1 7_555 -0.359 -1.248 3.190 0.764 7.175 32.340 -3.319 0.750 2.846 12.685 -1.350 33.114 7 AA_DA7DC8:DG1DT2_AA A 7 ? A 2 ? A 8 ? A 1 ? # _atom_sites.entry_id 1DNS _atom_sites.fract_transf_matrix[1][1] 0.023568 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023568 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.040404 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? 28.246 19.352 -5.487 1.00 23.90 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? 28.233 17.910 -5.460 1.00 34.36 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? 29.489 17.447 -4.732 1.00 24.31 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? 30.609 17.617 -5.586 1.00 26.83 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? 29.845 18.181 -3.445 1.00 21.35 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? 29.149 17.748 -2.284 1.00 22.57 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? 31.339 17.829 -3.297 1.00 21.78 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? 31.755 17.855 -4.750 1.00 25.10 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? 32.238 19.191 -5.131 1.00 20.14 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? 31.585 20.137 -5.871 1.00 20.77 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? 32.298 21.223 -6.046 1.00 16.84 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? 33.507 20.939 -5.418 1.00 22.00 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? 34.674 21.716 -5.227 1.00 24.25 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? 34.848 22.827 -5.712 1.00 23.34 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? 35.675 21.092 -4.497 1.00 20.12 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? 35.518 19.845 -3.987 1.00 19.95 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? 36.536 19.361 -3.284 1.00 23.24 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? 34.436 19.094 -4.099 1.00 23.68 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? 33.473 19.713 -4.819 1.00 20.39 ? 1 DG A C4 1 ATOM 20 P P . DT A 1 2 ? 28.768 18.635 -0.978 1.00 27.37 ? 2 DT A P 1 ATOM 21 O OP1 . DT A 1 2 ? 27.681 17.922 -0.277 1.00 31.42 ? 2 DT A OP1 1 ATOM 22 O OP2 . DT A 1 2 ? 28.148 19.891 -1.562 1.00 25.69 ? 2 DT A OP2 1 ATOM 23 O "O5'" . DT A 1 2 ? 30.138 19.047 -0.275 1.00 27.89 ? 2 DT A "O5'" 1 ATOM 24 C "C5'" . DT A 1 2 ? 30.745 17.965 0.502 1.00 29.70 ? 2 DT A "C5'" 1 ATOM 25 C "C4'" . DT A 1 2 ? 32.103 18.474 0.901 1.00 27.56 ? 2 DT A "C4'" 1 ATOM 26 O "O4'" . DT A 1 2 ? 32.858 18.771 -0.250 1.00 32.42 ? 2 DT A "O4'" 1 ATOM 27 C "C3'" . DT A 1 2 ? 32.107 19.785 1.683 1.00 37.79 ? 2 DT A "C3'" 1 ATOM 28 O "O3'" . DT A 1 2 ? 31.776 19.637 3.062 1.00 33.75 ? 2 DT A "O3'" 1 ATOM 29 C "C2'" . DT A 1 2 ? 33.549 20.282 1.458 1.00 26.59 ? 2 DT A "C2'" 1 ATOM 30 C "C1'" . DT A 1 2 ? 33.766 19.870 0.015 1.00 24.97 ? 2 DT A "C1'" 1 ATOM 31 N N1 . DT A 1 2 ? 33.511 21.003 -0.879 1.00 24.50 ? 2 DT A N1 1 ATOM 32 C C2 . DT A 1 2 ? 34.551 21.911 -1.057 1.00 30.19 ? 2 DT A C2 1 ATOM 33 O O2 . DT A 1 2 ? 35.628 21.758 -0.478 1.00 26.26 ? 2 DT A O2 1 ATOM 34 N N3 . DT A 1 2 ? 34.347 22.980 -1.908 1.00 21.94 ? 2 DT A N3 1 ATOM 35 C C4 . DT A 1 2 ? 33.155 23.188 -2.517 1.00 22.05 ? 2 DT A C4 1 ATOM 36 O O4 . DT A 1 2 ? 33.053 24.232 -3.225 1.00 22.97 ? 2 DT A O4 1 ATOM 37 C C5 . DT A 1 2 ? 32.094 22.242 -2.312 1.00 23.37 ? 2 DT A C5 1 ATOM 38 C C7 . DT A 1 2 ? 30.753 22.399 -2.982 1.00 23.81 ? 2 DT A C7 1 ATOM 39 C C6 . DT A 1 2 ? 32.306 21.211 -1.483 1.00 23.35 ? 2 DT A C6 1 ATOM 40 P P . DG A 1 3 ? 31.220 20.973 3.829 1.00 39.43 ? 3 DG A P 1 ATOM 41 O OP1 . DG A 1 3 ? 30.779 20.282 5.074 1.00 37.32 ? 3 DG A OP1 1 ATOM 42 O OP2 . DG A 1 3 ? 30.176 21.648 3.020 1.00 34.24 ? 3 DG A OP2 1 ATOM 43 O "O5'" . DG A 1 3 ? 32.535 21.868 3.948 1.00 32.36 ? 3 DG A "O5'" 1 ATOM 44 C "C5'" . DG A 1 3 ? 33.448 21.741 5.066 1.00 35.71 ? 3 DG A "C5'" 1 ATOM 45 C "C4'" . DG A 1 3 ? 34.653 22.594 4.735 1.00 38.32 ? 3 DG A "C4'" 1 ATOM 46 O "O4'" . DG A 1 3 ? 34.937 22.547 3.346 1.00 32.04 ? 3 DG A "O4'" 1 ATOM 47 C "C3'" . DG A 1 3 ? 34.445 24.075 5.049 1.00 39.64 ? 3 DG A "C3'" 1 ATOM 48 O "O3'" . DG A 1 3 ? 34.572 24.308 6.447 1.00 36.99 ? 3 DG A "O3'" 1 ATOM 49 C "C2'" . DG A 1 3 ? 35.505 24.724 4.156 1.00 31.44 ? 3 DG A "C2'" 1 ATOM 50 C "C1'" . DG A 1 3 ? 35.455 23.812 2.930 1.00 29.62 ? 3 DG A "C1'" 1 ATOM 51 N N9 . DG A 1 3 ? 34.619 24.444 1.893 1.00 20.58 ? 3 DG A N9 1 ATOM 52 C C8 . DG A 1 3 ? 33.350 24.177 1.450 1.00 24.05 ? 3 DG A C8 1 ATOM 53 N N7 . DG A 1 3 ? 32.934 24.983 0.505 1.00 26.42 ? 3 DG A N7 1 ATOM 54 C C5 . DG A 1 3 ? 33.999 25.853 0.309 1.00 21.55 ? 3 DG A C5 1 ATOM 55 C C6 . DG A 1 3 ? 34.177 26.943 -0.579 1.00 20.96 ? 3 DG A C6 1 ATOM 56 O O6 . DG A 1 3 ? 33.325 27.346 -1.406 1.00 25.88 ? 3 DG A O6 1 ATOM 57 N N1 . DG A 1 3 ? 35.378 27.579 -0.431 1.00 20.72 ? 3 DG A N1 1 ATOM 58 C C2 . DG A 1 3 ? 36.329 27.181 0.463 1.00 25.56 ? 3 DG A C2 1 ATOM 59 N N2 . DG A 1 3 ? 37.474 27.817 0.552 1.00 24.45 ? 3 DG A N2 1 ATOM 60 N N3 . DG A 1 3 ? 36.231 26.154 1.297 1.00 18.60 ? 3 DG A N3 1 ATOM 61 C C4 . DG A 1 3 ? 35.030 25.539 1.163 1.00 22.95 ? 3 DG A C4 1 ATOM 62 P P . DT A 1 4 ? 34.258 25.649 7.296 1.00 40.35 ? 4 DT A P 1 ATOM 63 O OP1 . DT A 1 4 ? 35.064 25.403 8.640 1.00 46.98 ? 4 DT A OP1 1 ATOM 64 O OP2 . DT A 1 4 ? 32.883 25.691 7.408 1.00 31.27 ? 4 DT A OP2 1 ATOM 65 O "O5'" . DT A 1 4 ? 35.187 26.782 6.670 1.00 30.96 ? 4 DT A "O5'" 1 ATOM 66 C "C5'" . DT A 1 4 ? 36.617 26.739 6.779 1.00 37.34 ? 4 DT A "C5'" 1 ATOM 67 C "C4'" . DT A 1 4 ? 37.063 28.084 6.225 1.00 38.58 ? 4 DT A "C4'" 1 ATOM 68 O "O4'" . DT A 1 4 ? 36.948 28.055 4.814 1.00 31.08 ? 4 DT A "O4'" 1 ATOM 69 C "C3'" . DT A 1 4 ? 36.265 29.289 6.663 1.00 28.39 ? 4 DT A "C3'" 1 ATOM 70 O "O3'" . DT A 1 4 ? 36.757 29.850 7.900 1.00 34.17 ? 4 DT A "O3'" 1 ATOM 71 C "C2'" . DT A 1 4 ? 36.452 30.278 5.497 1.00 22.11 ? 4 DT A "C2'" 1 ATOM 72 C "C1'" . DT A 1 4 ? 36.583 29.345 4.294 1.00 29.38 ? 4 DT A "C1'" 1 ATOM 73 N N1 . DT A 1 4 ? 35.348 29.222 3.492 1.00 16.71 ? 4 DT A N1 1 ATOM 74 C C2 . DT A 1 4 ? 35.213 30.117 2.438 1.00 22.53 ? 4 DT A C2 1 ATOM 75 O O2 . DT A 1 4 ? 36.099 30.961 2.279 1.00 26.23 ? 4 DT A O2 1 ATOM 76 N N3 . DT A 1 4 ? 34.093 30.045 1.638 1.00 16.57 ? 4 DT A N3 1 ATOM 77 C C4 . DT A 1 4 ? 33.163 29.077 1.822 1.00 14.04 ? 4 DT A C4 1 ATOM 78 O O4 . DT A 1 4 ? 32.145 28.975 1.079 1.00 16.99 ? 4 DT A O4 1 ATOM 79 C C5 . DT A 1 4 ? 33.312 28.144 2.903 1.00 14.71 ? 4 DT A C5 1 ATOM 80 C C7 . DT A 1 4 ? 32.217 27.109 3.062 1.00 16.54 ? 4 DT A C7 1 ATOM 81 C C6 . DT A 1 4 ? 34.419 28.224 3.653 1.00 22.46 ? 4 DT A C6 1 ATOM 82 P P . DA A 1 5 ? 35.866 30.953 8.660 1.00 30.28 ? 5 DA A P 1 ATOM 83 O OP1 . DA A 1 5 ? 36.727 31.118 9.930 1.00 39.86 ? 5 DA A OP1 1 ATOM 84 O OP2 . DA A 1 5 ? 34.491 30.762 8.898 1.00 33.01 ? 5 DA A OP2 1 ATOM 85 O "O5'" . DA A 1 5 ? 36.201 32.323 7.861 1.00 32.09 ? 5 DA A "O5'" 1 ATOM 86 C "C5'" . DA A 1 5 ? 35.204 33.320 7.573 1.00 22.99 ? 5 DA A "C5'" 1 ATOM 87 C "C4'" . DA A 1 5 ? 35.790 34.177 6.465 1.00 24.54 ? 5 DA A "C4'" 1 ATOM 88 O "O4'" . DA A 1 5 ? 35.904 33.465 5.247 1.00 19.29 ? 5 DA A "O4'" 1 ATOM 89 C "C3'" . DA A 1 5 ? 34.890 35.365 6.165 1.00 22.05 ? 5 DA A "C3'" 1 ATOM 90 O "O3'" . DA A 1 5 ? 35.157 36.447 7.061 1.00 22.89 ? 5 DA A "O3'" 1 ATOM 91 C "C2'" . DA A 1 5 ? 35.208 35.650 4.698 1.00 11.44 ? 5 DA A "C2'" 1 ATOM 92 C "C1'" . DA A 1 5 ? 35.319 34.245 4.163 1.00 21.21 ? 5 DA A "C1'" 1 ATOM 93 N N9 . DA A 1 5 ? 34.071 33.554 3.772 1.00 18.05 ? 5 DA A N9 1 ATOM 94 C C8 . DA A 1 5 ? 33.477 32.459 4.366 1.00 18.46 ? 5 DA A C8 1 ATOM 95 N N7 . DA A 1 5 ? 32.404 32.009 3.735 1.00 16.31 ? 5 DA A N7 1 ATOM 96 C C5 . DA A 1 5 ? 32.319 32.871 2.631 1.00 15.27 ? 5 DA A C5 1 ATOM 97 C C6 . DA A 1 5 ? 31.424 32.900 1.544 1.00 19.45 ? 5 DA A C6 1 ATOM 98 N N6 . DA A 1 5 ? 30.363 32.094 1.438 1.00 20.97 ? 5 DA A N6 1 ATOM 99 N N1 . DA A 1 5 ? 31.644 33.880 0.629 1.00 20.77 ? 5 DA A N1 1 ATOM 100 C C2 . DA A 1 5 ? 32.671 34.746 0.743 1.00 19.38 ? 5 DA A C2 1 ATOM 101 N N3 . DA A 1 5 ? 33.579 34.759 1.718 1.00 17.58 ? 5 DA A N3 1 ATOM 102 C C4 . DA A 1 5 ? 33.312 33.817 2.653 1.00 24.56 ? 5 DA A C4 1 ATOM 103 P P . DC A 1 6 ? 34.020 37.419 7.546 1.00 26.03 ? 6 DC A P 1 ATOM 104 O OP1 . DC A 1 6 ? 34.780 38.336 8.492 1.00 31.23 ? 6 DC A OP1 1 ATOM 105 O OP2 . DC A 1 6 ? 32.968 36.562 8.024 1.00 20.79 ? 6 DC A OP2 1 ATOM 106 O "O5'" . DC A 1 6 ? 33.460 38.369 6.388 1.00 18.93 ? 6 DC A "O5'" 1 ATOM 107 C "C5'" . DC A 1 6 ? 34.385 39.133 5.561 1.00 17.51 ? 6 DC A "C5'" 1 ATOM 108 C "C4'" . DC A 1 6 ? 33.622 39.481 4.287 1.00 19.94 ? 6 DC A "C4'" 1 ATOM 109 O "O4'" . DC A 1 6 ? 33.401 38.336 3.485 1.00 20.54 ? 6 DC A "O4'" 1 ATOM 110 C "C3'" . DC A 1 6 ? 32.209 39.999 4.514 1.00 22.24 ? 6 DC A "C3'" 1 ATOM 111 O "O3'" . DC A 1 6 ? 32.111 41.386 4.923 1.00 26.15 ? 6 DC A "O3'" 1 ATOM 112 C "C2'" . DC A 1 6 ? 31.572 39.804 3.131 1.00 23.46 ? 6 DC A "C2'" 1 ATOM 113 C "C1'" . DC A 1 6 ? 32.162 38.480 2.742 1.00 17.76 ? 6 DC A "C1'" 1 ATOM 114 N N1 . DC A 1 6 ? 31.330 37.313 3.081 1.00 18.51 ? 6 DC A N1 1 ATOM 115 C C2 . DC A 1 6 ? 30.367 36.974 2.148 1.00 21.89 ? 6 DC A C2 1 ATOM 116 O O2 . DC A 1 6 ? 30.219 37.703 1.153 1.00 25.51 ? 6 DC A O2 1 ATOM 117 N N3 . DC A 1 6 ? 29.599 35.858 2.393 1.00 16.80 ? 6 DC A N3 1 ATOM 118 C C4 . DC A 1 6 ? 29.799 35.098 3.500 1.00 19.61 ? 6 DC A C4 1 ATOM 119 N N4 . DC A 1 6 ? 29.073 33.999 3.717 1.00 21.85 ? 6 DC A N4 1 ATOM 120 C C5 . DC A 1 6 ? 30.825 35.446 4.438 1.00 20.01 ? 6 DC A C5 1 ATOM 121 C C6 . DC A 1 6 ? 31.559 36.541 4.175 1.00 18.43 ? 6 DC A C6 1 ATOM 122 P P . DA A 1 7 ? 30.830 41.811 5.670 1.00 28.67 ? 7 DA A P 1 ATOM 123 O OP1 . DA A 1 7 ? 31.105 43.113 6.217 1.00 28.95 ? 7 DA A OP1 1 ATOM 124 O OP2 . DA A 1 7 ? 30.231 40.852 6.613 1.00 21.32 ? 7 DA A OP2 1 ATOM 125 O "O5'" . DA A 1 7 ? 29.578 41.904 4.517 1.00 23.46 ? 7 DA A "O5'" 1 ATOM 126 C "C5'" . DA A 1 7 ? 29.790 42.948 3.524 1.00 22.03 ? 7 DA A "C5'" 1 ATOM 127 C "C4'" . DA A 1 7 ? 28.602 42.786 2.579 1.00 21.54 ? 7 DA A "C4'" 1 ATOM 128 O "O4'" . DA A 1 7 ? 28.640 41.488 2.079 1.00 23.11 ? 7 DA A "O4'" 1 ATOM 129 C "C3'" . DA A 1 7 ? 27.223 42.901 3.205 1.00 13.84 ? 7 DA A "C3'" 1 ATOM 130 O "O3'" . DA A 1 7 ? 26.790 44.271 3.190 1.00 25.74 ? 7 DA A "O3'" 1 ATOM 131 C "C2'" . DA A 1 7 ? 26.349 41.993 2.364 1.00 26.65 ? 7 DA A "C2'" 1 ATOM 132 C "C1'" . DA A 1 7 ? 27.333 40.941 1.908 1.00 25.38 ? 7 DA A "C1'" 1 ATOM 133 N N9 . DA A 1 7 ? 27.227 39.685 2.688 1.00 23.62 ? 7 DA A N9 1 ATOM 134 C C8 . DA A 1 7 ? 28.017 39.222 3.700 1.00 20.60 ? 7 DA A C8 1 ATOM 135 N N7 . DA A 1 7 ? 27.622 38.026 4.101 1.00 20.16 ? 7 DA A N7 1 ATOM 136 C C5 . DA A 1 7 ? 26.557 37.682 3.312 1.00 21.07 ? 7 DA A C5 1 ATOM 137 C C6 . DA A 1 7 ? 25.734 36.524 3.277 1.00 19.64 ? 7 DA A C6 1 ATOM 138 N N6 . DA A 1 7 ? 25.874 35.438 4.032 1.00 19.55 ? 7 DA A N6 1 ATOM 139 N N1 . DA A 1 7 ? 24.779 36.549 2.319 1.00 20.19 ? 7 DA A N1 1 ATOM 140 C C2 . DA A 1 7 ? 24.601 37.610 1.487 1.00 20.09 ? 7 DA A C2 1 ATOM 141 N N3 . DA A 1 7 ? 25.335 38.726 1.483 1.00 24.83 ? 7 DA A N3 1 ATOM 142 C C4 . DA A 1 7 ? 26.302 38.692 2.416 1.00 17.69 ? 7 DA A C4 1 ATOM 143 P P . DC A 1 8 ? 25.657 44.679 4.267 1.00 34.83 ? 8 DC A P 1 ATOM 144 O OP1 . DC A 1 8 ? 25.662 46.236 3.995 1.00 37.09 ? 8 DC A OP1 1 ATOM 145 O OP2 . DC A 1 8 ? 26.341 44.276 5.549 1.00 31.85 ? 8 DC A OP2 1 ATOM 146 O "O5'" . DC A 1 8 ? 24.317 44.072 3.876 1.00 36.55 ? 8 DC A "O5'" 1 ATOM 147 C "C5'" . DC A 1 8 ? 23.600 44.479 2.693 1.00 36.11 ? 8 DC A "C5'" 1 ATOM 148 C "C4'" . DC A 1 8 ? 22.365 43.618 2.507 1.00 34.59 ? 8 DC A "C4'" 1 ATOM 149 O "O4'" . DC A 1 8 ? 22.759 42.269 2.294 1.00 37.55 ? 8 DC A "O4'" 1 ATOM 150 C "C3'" . DC A 1 8 ? 21.393 43.601 3.670 1.00 35.59 ? 8 DC A "C3'" 1 ATOM 151 O "O3'" . DC A 1 8 ? 20.209 44.373 3.411 1.00 46.30 ? 8 DC A "O3'" 1 ATOM 152 C "C2'" . DC A 1 8 ? 20.939 42.167 3.849 1.00 34.98 ? 8 DC A "C2'" 1 ATOM 153 C "C1'" . DC A 1 8 ? 21.851 41.386 2.925 1.00 32.43 ? 8 DC A "C1'" 1 ATOM 154 N N1 . DC A 1 8 ? 22.543 40.398 3.792 1.00 29.56 ? 8 DC A N1 1 ATOM 155 C C2 . DC A 1 8 ? 21.996 39.133 3.737 1.00 22.35 ? 8 DC A C2 1 ATOM 156 O O2 . DC A 1 8 ? 21.041 38.904 3.007 1.00 21.14 ? 8 DC A O2 1 ATOM 157 N N3 . DC A 1 8 ? 22.564 38.162 4.517 1.00 27.10 ? 8 DC A N3 1 ATOM 158 C C4 . DC A 1 8 ? 23.638 38.420 5.324 1.00 19.20 ? 8 DC A C4 1 ATOM 159 N N4 . DC A 1 8 ? 24.177 37.436 6.066 1.00 24.26 ? 8 DC A N4 1 ATOM 160 C C5 . DC A 1 8 ? 24.164 39.714 5.348 1.00 25.39 ? 8 DC A C5 1 ATOM 161 C C6 . DC A 1 8 ? 23.587 40.678 4.603 1.00 26.37 ? 8 DC A C6 1 HETATM 162 N N1 . SPM B 2 . ? 31.385 25.954 -4.579 1.00 46.25 ? 9 SPM A N1 1 HETATM 163 C C2 . SPM B 2 . ? 31.835 26.366 -3.166 1.00 40.05 ? 9 SPM A C2 1 HETATM 164 C C3 . SPM B 2 . ? 30.698 26.455 -2.163 1.00 42.31 ? 9 SPM A C3 1 HETATM 165 C C4 . SPM B 2 . ? 30.813 25.454 -0.983 1.00 46.05 ? 9 SPM A C4 1 HETATM 166 N N5 . SPM B 2 . ? 29.951 26.044 0.173 1.00 50.98 ? 9 SPM A N5 1 HETATM 167 C C6 . SPM B 2 . ? 30.261 27.567 0.235 1.00 45.32 ? 9 SPM A C6 1 HETATM 168 C C7 . SPM B 2 . ? 29.073 28.428 0.626 1.00 44.38 ? 9 SPM A C7 1 #