data_1ZFF # _entry.id 1ZFF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1ZFF pdb_00001zff 10.2210/pdb1zff/pdb NDB BD0087 ? ? RCSB RCSB032657 ? ? WWPDB D_1000032657 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-05-10 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 5 'Structure model' 1 4 2019-07-24 6 'Structure model' 1 5 2024-02-14 7 'Structure model' 1 6 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Refinement description' 6 6 'Structure model' 'Data collection' 7 6 'Structure model' 'Database references' 8 7 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' software 3 6 'Structure model' chem_comp_atom 4 6 'Structure model' chem_comp_bond 5 6 'Structure model' database_2 6 7 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_software.classification' 2 5 'Structure model' '_software.contact_author' 3 5 'Structure model' '_software.contact_author_email' 4 5 'Structure model' '_software.location' 5 5 'Structure model' '_software.name' 6 5 'Structure model' '_software.type' 7 5 'Structure model' '_software.version' 8 6 'Structure model' '_database_2.pdbx_DOI' 9 6 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.entry_id 1ZFF _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2005-04-20 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1P4Y . unspecified PDB 1P4Z . unspecified PDB 1DCW . unspecified PDB 1DCV . unspecified NDB BD0036 . unspecified NDB BD0035 . unspecified NDB BD0033 . unspecified NDB BD0034 . unspecified NDB BD0023 . unspecified NDB BDJ017 . unspecified PDB 1ZEW . unspecified PDB 1ZEX . unspecified PDB 1ZEY . unspecified PDB 1ZEZ . unspecified PDB 1ZF0 . unspecified PDB 1ZF1 . unspecified PDB 1ZF2 . unspecified PDB 1ZF3 . unspecified PDB 1ZF4 . unspecified PDB 1ZF5 . unspecified PDB 1ZF6 . unspecified PDB 1ZF7 . unspecified PDB 1ZF8 . unspecified PDB 1ZF9 . unspecified PDB 1ZFA . unspecified PDB 1ZFB . unspecified PDB 1ZFC . unspecified PDB 1ZFE . unspecified PDB 1ZFG . unspecified PDB 1ZFH . unspecified PDB 1ZFM . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hays, F.A.' 1 'Teegarden, A.T.' 2 'Jones, Z.J.R.' 3 'Harms, M.' 4 'Raup, D.' 5 'Watson, J.' 6 'Cavaliere, E.' 7 'Ho, P.S.' 8 # _citation.id primary _citation.title 'How sequence defines structure: a crystallographic map of DNA structure and conformation.' _citation.journal_abbrev Proc.Natl.Acad.Sci.Usa _citation.journal_volume 102 _citation.page_first 7157 _citation.page_last 7162 _citation.year 2005 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15870206 _citation.pdbx_database_id_DOI 10.1073/pnas.0409455102 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hays, F.A.' 1 ? primary 'Teegarden, A.' 2 ? primary 'Jones, Z.J.' 3 ? primary 'Harms, M.' 4 ? primary 'Raup, D.' 5 ? primary 'Watson, J.' 6 ? primary 'Cavaliere, E.' 7 ? primary 'Ho, P.S.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description "5'-D(*CP*CP*GP*AP*AP*TP*TP*CP*GP*G)-3'" _entity.formula_weight 3045.005 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CCGAATTCGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DG n 1 4 DA n 1 5 DA n 1 6 DT n 1 7 DT n 1 8 DC n 1 9 DG n 1 10 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details ;DNA WAS SYNTHESIZED ON AN APPLIED BIOSYSTEMS DNA SYNTHESIZER USING PHOSPHORAMIDITE CHEMISTRY, WITH THE TRITYL-PROTECTING GROUP LEFT INTACT AT THE 5'-TERMINAL NUCLEOTIDE THEN DEPROTECTED BY TREATMENT WITH 3% ACETIC ACID FOR FIFTEEN MINUTES, NEUTRALIZED WITH AMMONIUM HYDROXIDE, AND DESALTED ON A SIGMA G-25 SEPHADEX COLUMN. ; # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DT 6 6 6 DT T A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DG 10 10 10 DG G A . n # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal CNS 1.1 ? ? ? ? refinement ? ? ? 1 SCALEPACK . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data scaling' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 2 REFMAC 5.2.0005 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 3 EPMR . ? ? ? ? phasing ? ? ? 4 DENZO . ? package 'Zbyszek Otwinowski' zbyszek@mix.swmed.edu 'data reduction' http://www.lnls.br/infra/linhasluz/denzo-hkl.htm ? ? 5 # _cell.entry_id 1ZFF _cell.length_a 34.292 _cell.length_b 20.318 _cell.length_c 33.482 _cell.angle_alpha 90.00 _cell.angle_beta 112.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ZFF _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1ZFF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.78 _exptl_crystal.density_percent_sol 30.74 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'Na Cacodylate, CaCl2, Spermine, MPD in resevoir, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K, pH 7.00' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'Na Cacodylate' ? ? ? 1 2 1 CaCl2 ? ? ? 1 3 1 Spermine ? ? ? 1 4 1 MPD ? ? ? 1 5 1 H2O ? ? ? 1 6 2 'Na Cacodylate' ? ? ? 1 7 2 CaCl2 ? ? ? 1 8 2 MPD ? ? ? 1 9 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 103.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2003-05-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 14-BM-D' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 14-BM-D _diffrn_source.pdbx_wavelength 0.9795 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1ZFF _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 7.90 _reflns.d_resolution_high 0.940 _reflns.number_obs 11437 _reflns.number_all ? _reflns.percent_possible_obs 81.1 _reflns.pdbx_Rmerge_I_obs 0.046 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.2000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 0.94 _reflns_shell.d_res_low 0.97 _reflns_shell.percent_possible_all 41.6 _reflns_shell.Rmerge_I_obs 0.218 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.300 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1ZFF _refine.ls_number_reflns_obs 10948 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 42618.16 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 7.72 _refine.ls_d_res_high 0.94 _refine.ls_percent_reflns_obs 82.3 _refine.ls_R_factor_obs 0.428 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.428 _refine.ls_R_factor_R_free 0.444 _refine.ls_R_factor_R_free_error 0.013 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.3 _refine.ls_number_reflns_R_free 1133 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.445 _refine.correlation_coeff_Fo_to_Fc_free 0.430 _refine.B_iso_mean 3.03 _refine.aniso_B[1][1] 0.06000 _refine.aniso_B[2][2] -0.10000 _refine.aniso_B[3][3] 0.04000 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;STRUCTURE IS NOT FULLY REFINED TO ITS LOWEST R VALUES! THIS STRUCTURE WILL BE UPDATED AS THE STRUCTURE BECOMES BETTER REFINED. REFER TO MANUSCRIPT CITATION. ; _refine.pdbx_starting_model 'NDB ENTRY BD0034' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.076 _refine.pdbx_overall_ESU_R_Free 0.066 _refine.overall_SU_ML 0.136 _refine.overall_SU_B 5.500 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 202 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 202 _refine_hist.d_res_high 0.94 _refine_hist.d_res_low 7.72 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.004 ? 0.021 ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.280 ? 3.000 ? 'X-RAY DIFFRACTION' ? c_scbond_it 0.255 ? 3.000 ? 'X-RAY DIFFRACTION' ? c_scangle_it 0.454 ? 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 0.94 _refine_ls_shell.d_res_low 1.00 _refine_ls_shell.number_reflns_R_work 1202 _refine_ls_shell.R_factor_R_work 0.456 _refine_ls_shell.percent_reflns_obs 60.8 _refine_ls_shell.R_factor_R_free 0.427 _refine_ls_shell.R_factor_R_free_error 0.040 _refine_ls_shell.percent_reflns_R_free 10.6 _refine_ls_shell.number_reflns_R_free 142 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? # _struct.entry_id 1ZFF _struct.title 'TTC Duplex B-DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text 'Crystallographic Screen, DNA Structure, Holliday Junction, Molecular Structure, DNA' _struct_keywords.entry_id 1ZFF _struct_keywords.pdbx_keywords DNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1ZFF _struct_ref.pdbx_db_accession 1ZFF _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1ZFF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 10 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1ZFF _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 10 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 21.7494220392 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 31.0439698186 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 10 N2 ? ? A DC 1 A DG 10 2_656 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog2 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 9 N1 ? ? A DC 2 A DG 9 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 9 O6 ? ? A DC 2 A DG 9 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 9 N2 ? ? A DC 2 A DG 9 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 3 A DC 8 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 3 A DC 8 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 3 A DC 8 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 4 N1 ? ? ? 1_555 A DT 7 N3 ? ? A DA 4 A DT 7 2_656 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog9 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A DT 6 N3 ? ? A DA 5 A DT 6 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DT 6 O4 ? ? A DA 5 A DT 6 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 6 N3 ? ? ? 1_555 A DA 5 N1 ? ? A DT 6 A DA 5 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 6 O4 ? ? ? 1_555 A DA 5 N6 ? ? A DT 6 A DA 5 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 7 N3 ? ? ? 1_555 A DA 4 N1 ? ? A DT 7 A DA 4 2_656 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog14 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 8 A DG 3 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 8 A DG 3 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 8 A DG 3 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 9 A DC 2 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 9 A DC 2 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 9 A DC 2 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 10 A DC 1 2_656 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC A 1 ? ? 0.096 'SIDE CHAIN' 2 1 DG A 10 ? ? 0.059 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 # _ndb_struct_conf_na.entry_id 1ZFF _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 10 2_656 -1.009 0.480 0.029 0.686 -3.451 9.940 1 A_DC1:DG10_A A 1 ? A 10 ? ? 1 1 A DC 2 1_555 A DG 9 2_656 1.701 -0.771 0.078 2.090 -7.049 -8.876 2 A_DC2:DG9_A A 2 ? A 9 ? 19 1 1 A DG 3 1_555 A DC 8 2_656 -0.535 -0.431 -0.311 -18.124 -5.543 2.617 3 A_DG3:DC8_A A 3 ? A 8 ? 19 1 1 A DA 4 1_555 A DT 7 2_656 -1.788 0.146 0.331 8.241 -8.015 23.942 4 A_DA4:DT7_A A 4 ? A 7 ? ? 1 1 A DA 5 1_555 A DT 6 2_656 0.456 0.374 -0.127 4.432 -12.153 -2.985 5 A_DA5:DT6_A A 5 ? A 6 ? 20 1 1 A DT 6 1_555 A DA 5 2_656 -0.456 0.374 -0.127 -4.432 -12.153 -2.985 6 A_DT6:DA5_A A 6 ? A 5 ? 20 1 1 A DT 7 1_555 A DA 4 2_656 1.788 0.146 0.331 -8.241 -8.014 23.942 7 A_DT7:DA4_A A 7 ? A 4 ? ? 1 1 A DC 8 1_555 A DG 3 2_656 0.535 -0.431 -0.311 18.124 -5.543 2.617 8 A_DC8:DG3_A A 8 ? A 3 ? 19 1 1 A DG 9 1_555 A DC 2 2_656 -1.701 -0.771 0.078 -2.090 -7.049 -8.876 9 A_DG9:DC2_A A 9 ? A 2 ? 19 1 1 A DG 10 1_555 A DC 1 2_656 1.009 0.480 0.029 -0.686 -3.451 9.939 10 A_DG10:DC1_A A 10 ? A 1 ? ? 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 10 2_656 A DC 2 1_555 A DG 9 2_656 -1.107 0.941 3.295 -2.500 11.805 41.265 0.045 1.250 3.483 16.334 3.460 42.919 1 AA_DC1DC2:DG9DG10_AA A 1 ? A 10 ? A 2 ? A 9 ? 1 A DC 2 1_555 A DG 9 2_656 A DG 3 1_555 A DC 8 2_656 1.149 1.473 3.595 5.007 3.651 38.373 1.706 -1.032 3.828 5.510 -7.557 38.851 2 AA_DC2DG3:DC8DG9_AA A 2 ? A 9 ? A 3 ? A 8 ? 1 A DG 3 1_555 A DC 8 2_656 A DA 4 1_555 A DT 7 2_656 0.895 0.213 2.692 -5.385 3.936 24.871 -0.406 -3.218 2.451 8.935 12.224 25.736 3 AA_DG3DA4:DT7DC8_AA A 3 ? A 8 ? A 4 ? A 7 ? 1 A DA 4 1_555 A DT 7 2_656 A DA 5 1_555 A DT 6 2_656 -0.771 0.290 3.339 2.510 2.915 40.038 0.086 1.411 3.298 4.245 -3.656 40.215 4 AA_DA4DA5:DT6DT7_AA A 4 ? A 7 ? A 5 ? A 6 ? 1 A DA 5 1_555 A DT 6 2_656 A DT 6 1_555 A DA 5 2_656 0.000 0.336 3.250 0.000 -0.195 40.428 0.507 0.000 3.248 -0.282 0.000 40.429 5 AA_DA5DT6:DA5DT6_AA A 5 ? A 6 ? A 6 ? A 5 ? 1 A DT 6 1_555 A DA 5 2_656 A DT 7 1_555 A DA 4 2_656 0.771 0.290 3.339 -2.510 2.915 40.038 0.086 -1.411 3.298 4.245 3.656 40.215 6 AA_DT6DT7:DA4DA5_AA A 6 ? A 5 ? A 7 ? A 4 ? 1 A DT 7 1_555 A DA 4 2_656 A DC 8 1_555 A DG 3 2_656 -0.895 0.213 2.692 5.385 3.936 24.871 -0.406 3.218 2.451 8.935 -12.225 25.736 7 AA_DT7DC8:DG3DA4_AA A 7 ? A 4 ? A 8 ? A 3 ? 1 A DC 8 1_555 A DG 3 2_656 A DG 9 1_555 A DC 2 2_656 -1.149 1.473 3.595 -5.007 3.651 38.373 1.706 1.032 3.828 5.510 7.557 38.851 8 AA_DC8DG9:DC2DG3_AA A 8 ? A 3 ? A 9 ? A 2 ? 1 A DG 9 1_555 A DC 2 2_656 A DG 10 1_555 A DC 1 2_656 1.107 0.941 3.295 2.500 11.805 41.265 0.045 -1.250 3.483 16.334 -3.460 42.919 9 AA_DG9DG10:DC1DC2_AA A 9 ? A 2 ? A 10 ? A 1 ? # _pdbx_initial_refinement_model.accession_code 1EN8 _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details 'NDB ENTRY BD0034' # _atom_sites.entry_id 1ZFF _atom_sites.fract_transf_matrix[1][1] 0.029161 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.011782 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.049217 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.032212 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DC A 1 1 ? 25.099 15.806 4.203 0.50 3.63 ? 1 DC A "O5'" 1 ATOM 2 C "C5'" . DC A 1 1 ? 24.208 16.307 5.211 0.50 3.52 ? 1 DC A "C5'" 1 ATOM 3 C "C4'" . DC A 1 1 ? 23.158 17.219 4.620 0.50 3.00 ? 1 DC A "C4'" 1 ATOM 4 O "O4'" . DC A 1 1 ? 22.187 16.425 3.899 0.50 2.88 ? 1 DC A "O4'" 1 ATOM 5 C "C3'" . DC A 1 1 ? 22.359 18.021 5.643 0.50 3.32 ? 1 DC A "C3'" 1 ATOM 6 O "O3'" . DC A 1 1 ? 22.068 19.309 5.085 0.50 3.69 ? 1 DC A "O3'" 1 ATOM 7 C "C2'" . DC A 1 1 ? 21.116 17.170 5.862 0.50 2.90 ? 1 DC A "C2'" 1 ATOM 8 C "C1'" . DC A 1 1 ? 20.906 16.496 4.515 0.50 2.35 ? 1 DC A "C1'" 1 ATOM 9 N N1 . DC A 1 1 ? 20.349 15.125 4.537 1.00 1.61 ? 1 DC A N1 1 ATOM 10 C C2 . DC A 1 1 ? 19.279 14.832 3.687 1.00 1.49 ? 1 DC A C2 1 ATOM 11 O O2 . DC A 1 1 ? 18.700 15.764 3.088 1.00 1.41 ? 1 DC A O2 1 ATOM 12 N N3 . DC A 1 1 ? 18.882 13.543 3.556 1.00 1.00 ? 1 DC A N3 1 ATOM 13 C C4 . DC A 1 1 ? 19.482 12.574 4.263 1.00 1.00 ? 1 DC A C4 1 ATOM 14 N N4 . DC A 1 1 ? 19.141 11.282 4.014 1.00 1.00 ? 1 DC A N4 1 ATOM 15 C C5 . DC A 1 1 ? 20.489 12.864 5.226 1.00 1.47 ? 1 DC A C5 1 ATOM 16 C C6 . DC A 1 1 ? 20.889 14.141 5.328 1.00 1.41 ? 1 DC A C6 1 ATOM 17 P P . DC A 1 2 ? 21.251 20.395 5.944 0.50 3.85 ? 2 DC A P 1 ATOM 18 O OP1 . DC A 1 2 ? 21.404 21.701 5.257 0.50 3.75 ? 2 DC A OP1 1 ATOM 19 O OP2 . DC A 1 2 ? 21.605 20.275 7.386 0.50 3.63 ? 2 DC A OP2 1 ATOM 20 O "O5'" . DC A 1 2 ? 19.741 19.967 5.730 0.50 3.67 ? 2 DC A "O5'" 1 ATOM 21 C "C5'" . DC A 1 2 ? 19.043 20.429 4.579 0.50 3.36 ? 2 DC A "C5'" 1 ATOM 22 C "C4'" . DC A 1 2 ? 17.565 20.185 4.729 0.50 3.52 ? 2 DC A "C4'" 1 ATOM 23 O "O4'" . DC A 1 2 ? 17.318 18.760 4.716 1.00 3.40 ? 2 DC A "O4'" 1 ATOM 24 C "C3'" . DC A 1 2 ? 16.983 20.704 6.041 1.00 3.61 ? 2 DC A "C3'" 1 ATOM 25 O "O3'" . DC A 1 2 ? 15.643 21.106 5.781 1.00 4.17 ? 2 DC A "O3'" 1 ATOM 26 C "C2'" . DC A 1 2 ? 17.023 19.481 6.940 1.00 3.38 ? 2 DC A "C2'" 1 ATOM 27 C "C1'" . DC A 1 2 ? 16.711 18.383 5.932 1.00 2.42 ? 2 DC A "C1'" 1 ATOM 28 N N1 . DC A 1 2 ? 17.100 16.995 6.218 1.00 1.55 ? 2 DC A N1 1 ATOM 29 C C2 . DC A 1 2 ? 16.320 16.036 5.638 1.00 1.00 ? 2 DC A C2 1 ATOM 30 O O2 . DC A 1 2 ? 15.349 16.395 4.964 1.00 1.00 ? 2 DC A O2 1 ATOM 31 N N3 . DC A 1 2 ? 16.597 14.741 5.820 1.00 1.00 ? 2 DC A N3 1 ATOM 32 C C4 . DC A 1 2 ? 17.607 14.381 6.610 1.00 1.33 ? 2 DC A C4 1 ATOM 33 N N4 . DC A 1 2 ? 17.786 13.068 6.810 1.00 1.69 ? 2 DC A N4 1 ATOM 34 C C5 . DC A 1 2 ? 18.446 15.340 7.235 1.00 1.41 ? 2 DC A C5 1 ATOM 35 C C6 . DC A 1 2 ? 18.165 16.638 7.008 1.00 1.32 ? 2 DC A C6 1 ATOM 36 P P . DG A 1 3 ? 15.035 22.401 6.527 1.00 5.29 ? 3 DG A P 1 ATOM 37 O OP1 . DG A 1 3 ? 15.960 23.522 6.230 1.00 5.44 ? 3 DG A OP1 1 ATOM 38 O OP2 . DG A 1 3 ? 14.747 22.035 7.943 1.00 5.59 ? 3 DG A OP2 1 ATOM 39 O "O5'" . DG A 1 3 ? 13.638 22.685 5.820 1.00 4.79 ? 3 DG A "O5'" 1 ATOM 40 C "C5'" . DG A 1 3 ? 13.248 22.033 4.620 1.00 5.19 ? 3 DG A "C5'" 1 ATOM 41 C "C4'" . DG A 1 3 ? 12.145 21.046 4.917 1.00 4.98 ? 3 DG A "C4'" 1 ATOM 42 O "O4'" . DG A 1 3 ? 12.755 19.802 5.347 1.00 4.49 ? 3 DG A "O4'" 1 ATOM 43 C "C3'" . DG A 1 3 ? 11.159 21.467 6.015 1.00 5.11 ? 3 DG A "C3'" 1 ATOM 44 O "O3'" . DG A 1 3 ? 9.796 21.273 5.586 1.00 6.08 ? 3 DG A "O3'" 1 ATOM 45 C "C2'" . DG A 1 3 ? 11.531 20.562 7.190 1.00 4.28 ? 3 DG A "C2'" 1 ATOM 46 C "C1'" . DG A 1 3 ? 12.113 19.308 6.524 1.00 3.81 ? 3 DG A "C1'" 1 ATOM 47 N N9 . DG A 1 3 ? 13.101 18.541 7.310 1.00 2.41 ? 3 DG A N9 1 ATOM 48 C C8 . DG A 1 3 ? 14.147 19.060 8.044 1.00 1.98 ? 3 DG A C8 1 ATOM 49 N N7 . DG A 1 3 ? 14.897 18.145 8.605 1.00 1.91 ? 3 DG A N7 1 ATOM 50 C C5 . DG A 1 3 ? 14.313 16.935 8.246 1.00 1.61 ? 3 DG A C5 1 ATOM 51 C C6 . DG A 1 3 ? 14.716 15.581 8.559 1.00 1.45 ? 3 DG A C6 1 ATOM 52 O O6 . DG A 1 3 ? 15.713 15.186 9.214 1.00 1.54 ? 3 DG A O6 1 ATOM 53 N N1 . DG A 1 3 ? 13.838 14.651 8.005 1.00 1.00 ? 3 DG A N1 1 ATOM 54 C C2 . DG A 1 3 ? 12.734 14.968 7.243 1.00 1.05 ? 3 DG A C2 1 ATOM 55 N N2 . DG A 1 3 ? 12.006 13.927 6.821 1.00 1.00 ? 3 DG A N2 1 ATOM 56 N N3 . DG A 1 3 ? 12.365 16.215 6.923 1.00 1.25 ? 3 DG A N3 1 ATOM 57 C C4 . DG A 1 3 ? 13.193 17.145 7.457 1.00 1.85 ? 3 DG A C4 1 ATOM 58 P P . DA A 1 4 ? 8.664 20.850 6.664 1.00 7.27 ? 4 DA A P 1 ATOM 59 O OP1 . DA A 1 4 ? 7.349 20.908 5.956 1.00 6.66 ? 4 DA A OP1 1 ATOM 60 O OP2 . DA A 1 4 ? 8.850 21.607 7.927 1.00 6.79 ? 4 DA A OP2 1 ATOM 61 O "O5'" . DA A 1 4 ? 8.986 19.313 6.927 1.00 5.92 ? 4 DA A "O5'" 1 ATOM 62 C "C5'" . DA A 1 4 ? 8.805 18.324 5.916 1.00 5.71 ? 4 DA A "C5'" 1 ATOM 63 C "C4'" . DA A 1 4 ? 7.943 17.213 6.459 1.00 5.47 ? 4 DA A "C4'" 1 ATOM 64 O "O4'" . DA A 1 4 ? 8.706 16.361 7.337 1.00 4.83 ? 4 DA A "O4'" 1 ATOM 65 C "C3'" . DA A 1 4 ? 6.827 17.791 7.312 0.60 5.24 ? 4 DA A "C3'" 1 ATOM 66 O "O3'" . DA A 1 4 ? 5.655 17.013 7.157 0.60 5.42 ? 4 DA A "O3'" 1 ATOM 67 C "C2'" . DA A 1 4 ? 7.389 17.743 8.725 1.00 4.99 ? 4 DA A "C2'" 1 ATOM 68 C "C1'" . DA A 1 4 ? 8.326 16.542 8.691 1.00 4.22 ? 4 DA A "C1'" 1 ATOM 69 N N9 . DA A 1 4 ? 9.559 16.724 9.454 1.00 3.47 ? 4 DA A N9 1 ATOM 70 C C8 . DA A 1 4 ? 10.109 17.894 9.926 1.00 3.58 ? 4 DA A C8 1 ATOM 71 N N7 . DA A 1 4 ? 11.238 17.722 10.568 1.00 3.47 ? 4 DA A N7 1 ATOM 72 C C5 . DA A 1 4 ? 11.443 16.349 10.513 1.00 2.62 ? 4 DA A C5 1 ATOM 73 C C6 . DA A 1 4 ? 12.459 15.526 11.011 1.00 2.43 ? 4 DA A C6 1 ATOM 74 N N6 . DA A 1 4 ? 13.512 15.984 11.679 1.00 2.00 ? 4 DA A N6 1 ATOM 75 N N1 . DA A 1 4 ? 12.357 14.192 10.795 1.00 2.26 ? 4 DA A N1 1 ATOM 76 C C2 . DA A 1 4 ? 11.301 13.737 10.113 1.00 2.31 ? 4 DA A C2 1 ATOM 77 N N3 . DA A 1 4 ? 10.285 14.412 9.595 1.00 2.12 ? 4 DA A N3 1 ATOM 78 C C4 . DA A 1 4 ? 10.417 15.726 9.833 1.00 2.67 ? 4 DA A C4 1 ATOM 79 P P . DA A 1 5 ? 4.471 17.167 8.214 0.40 5.71 ? 5 DA A P 1 ATOM 80 O OP1 . DA A 1 5 ? 3.212 17.027 7.454 0.60 5.44 ? 5 DA A OP1 1 ATOM 81 O OP2 . DA A 1 5 ? 4.714 18.385 9.028 0.60 5.09 ? 5 DA A OP2 1 ATOM 82 O "O5'" . DA A 1 5 ? 4.678 15.865 9.096 0.60 5.40 ? 5 DA A "O5'" 1 ATOM 83 C "C5'" . DA A 1 5 ? 5.044 14.649 8.457 0.60 5.05 ? 5 DA A "C5'" 1 ATOM 84 C "C4'" . DA A 1 5 ? 5.368 13.605 9.494 0.60 4.53 ? 5 DA A "C4'" 1 ATOM 85 O "O4'" . DA A 1 5 ? 6.631 13.894 10.140 0.60 4.38 ? 5 DA A "O4'" 1 ATOM 86 C "C3'" . DA A 1 5 ? 4.341 13.594 10.618 0.60 4.69 ? 5 DA A "C3'" 1 ATOM 87 O "O3'" . DA A 1 5 ? 4.339 12.284 11.170 0.60 4.66 ? 5 DA A "O3'" 1 ATOM 88 C "C2'" . DA A 1 5 ? 4.956 14.548 11.623 0.60 4.20 ? 5 DA A "C2'" 1 ATOM 89 C "C1'" . DA A 1 5 ? 6.386 14.078 11.531 0.60 3.56 ? 5 DA A "C1'" 1 ATOM 90 N N9 . DA A 1 5 ? 7.426 14.944 12.089 0.60 2.93 ? 5 DA A N9 1 ATOM 91 C C8 . DA A 1 5 ? 7.465 16.305 12.266 0.60 2.75 ? 5 DA A C8 1 ATOM 92 N N7 . DA A 1 5 ? 8.567 16.731 12.842 1.00 2.65 ? 5 DA A N7 1 ATOM 93 C C5 . DA A 1 5 ? 9.307 15.575 13.048 1.00 1.90 ? 5 DA A C5 1 ATOM 94 C C6 . DA A 1 5 ? 10.577 15.343 13.614 1.00 1.72 ? 5 DA A C6 1 ATOM 95 N N6 . DA A 1 5 ? 11.380 16.305 14.082 1.00 1.89 ? 5 DA A N6 1 ATOM 96 N N1 . DA A 1 5 ? 11.007 14.066 13.669 1.00 1.52 ? 5 DA A N1 1 ATOM 97 C C2 . DA A 1 5 ? 10.220 13.095 13.178 1.00 1.34 ? 5 DA A C2 1 ATOM 98 N N3 . DA A 1 5 ? 9.023 13.187 12.611 1.00 1.78 ? 5 DA A N3 1 ATOM 99 C C4 . DA A 1 5 ? 8.617 14.469 12.580 0.60 2.34 ? 5 DA A C4 1 ATOM 100 P P . DT A 1 6 ? 2.961 11.615 11.629 0.60 5.14 ? 6 DT A P 1 ATOM 101 O OP1 . DT A 1 6 ? 2.234 11.215 10.399 0.60 5.20 ? 6 DT A OP1 1 ATOM 102 O OP2 . DT A 1 6 ? 2.306 12.507 12.616 0.60 5.51 ? 6 DT A OP2 1 ATOM 103 O "O5'" . DT A 1 6 ? 3.442 10.284 12.365 0.60 5.46 ? 6 DT A "O5'" 1 ATOM 104 C "C5'" . DT A 1 6 ? 4.365 9.386 11.737 0.60 5.14 ? 6 DT A "C5'" 1 ATOM 105 C "C4'" . DT A 1 6 ? 5.289 8.775 12.766 0.60 5.64 ? 6 DT A "C4'" 1 ATOM 106 O "O4'" . DT A 1 6 ? 6.309 9.729 13.166 0.60 5.71 ? 6 DT A "O4'" 1 ATOM 107 C "C3'" . DT A 1 6 ? 4.585 8.347 14.052 0.50 5.58 ? 6 DT A "C3'" 1 ATOM 108 O "O3'" . DT A 1 6 ? 5.138 7.132 14.561 0.50 5.72 ? 6 DT A "O3'" 1 ATOM 109 C "C2'" . DT A 1 6 ? 4.893 9.483 15.003 0.60 5.65 ? 6 DT A "C2'" 1 ATOM 110 C "C1'" . DT A 1 6 ? 6.290 9.883 14.579 0.60 5.29 ? 6 DT A "C1'" 1 ATOM 111 N N1 . DT A 1 6 ? 6.618 11.285 14.901 1.00 4.95 ? 6 DT A N1 1 ATOM 112 C C2 . DT A 1 6 ? 7.819 11.553 15.512 1.00 4.81 ? 6 DT A C2 1 ATOM 113 O O2 . DT A 1 6 ? 8.614 10.683 15.797 1.00 5.15 ? 6 DT A O2 1 ATOM 114 N N3 . DT A 1 6 ? 8.045 12.884 15.778 1.00 4.21 ? 6 DT A N3 1 ATOM 115 C C4 . DT A 1 6 ? 7.205 13.946 15.511 1.00 4.07 ? 6 DT A C4 1 ATOM 116 O O4 . DT A 1 6 ? 7.566 15.095 15.799 1.00 3.43 ? 6 DT A O4 1 ATOM 117 C C5 . DT A 1 6 ? 5.943 13.586 14.892 1.00 4.38 ? 6 DT A C5 1 ATOM 118 C C7 . DT A 1 6 ? 4.929 14.651 14.624 1.00 4.83 ? 6 DT A C7 1 ATOM 119 C C6 . DT A 1 6 ? 5.730 12.293 14.605 1.00 4.66 ? 6 DT A C6 1 ATOM 120 P P . DT A 1 7 ? 4.981 6.786 16.124 0.50 5.62 ? 7 DT A P 1 ATOM 121 O OP1 . DT A 1 7 ? 5.178 5.329 16.292 0.50 5.50 ? 7 DT A OP1 1 ATOM 122 O OP2 . DT A 1 7 ? 3.727 7.411 16.612 0.50 5.28 ? 7 DT A OP2 1 ATOM 123 O "O5'" . DT A 1 7 ? 6.215 7.533 16.793 0.50 5.42 ? 7 DT A "O5'" 1 ATOM 124 C "C5'" . DT A 1 7 ? 7.549 7.098 16.545 0.50 5.05 ? 7 DT A "C5'" 1 ATOM 125 C "C4'" . DT A 1 7 ? 8.392 7.298 17.781 0.50 4.91 ? 7 DT A "C4'" 1 ATOM 126 O "O4'" . DT A 1 7 ? 8.568 8.720 17.987 0.50 4.46 ? 7 DT A "O4'" 1 ATOM 127 C "C3'" . DT A 1 7 ? 7.735 6.758 19.049 0.50 4.83 ? 7 DT A "C3'" 1 ATOM 128 O "O3'" . DT A 1 7 ? 8.680 6.121 19.912 0.50 5.40 ? 7 DT A "O3'" 1 ATOM 129 C "C2'" . DT A 1 7 ? 7.111 7.983 19.691 0.50 4.53 ? 7 DT A "C2'" 1 ATOM 130 C "C1'" . DT A 1 7 ? 7.953 9.148 19.193 0.50 4.21 ? 7 DT A "C1'" 1 ATOM 131 N N1 . DT A 1 7 ? 7.143 10.340 18.877 1.00 3.82 ? 7 DT A N1 1 ATOM 132 C C2 . DT A 1 7 ? 7.609 11.581 19.243 1.00 3.41 ? 7 DT A C2 1 ATOM 133 O O2 . DT A 1 7 ? 8.679 11.749 19.816 1.00 3.67 ? 7 DT A O2 1 ATOM 134 N N3 . DT A 1 7 ? 6.773 12.630 18.912 1.00 3.05 ? 7 DT A N3 1 ATOM 135 C C4 . DT A 1 7 ? 5.553 12.552 18.264 1.00 3.02 ? 7 DT A C4 1 ATOM 136 O O4 . DT A 1 7 ? 4.900 13.577 18.031 1.00 3.90 ? 7 DT A O4 1 ATOM 137 C C5 . DT A 1 7 ? 5.133 11.229 17.914 1.00 3.00 ? 7 DT A C5 1 ATOM 138 C C7 . DT A 1 7 ? 3.822 11.065 17.224 1.00 2.71 ? 7 DT A C7 1 ATOM 139 C C6 . DT A 1 7 ? 5.932 10.199 18.227 1.00 3.62 ? 7 DT A C6 1 ATOM 140 P P . DC A 1 8 ? 8.147 5.254 21.154 0.50 6.13 ? 8 DC A P 1 ATOM 141 O OP1 . DC A 1 8 ? 8.970 4.025 21.265 0.50 6.18 ? 8 DC A OP1 1 ATOM 142 O OP2 . DC A 1 8 ? 6.672 5.144 21.038 0.50 6.10 ? 8 DC A OP2 1 ATOM 143 O "O5'" . DC A 1 8 ? 8.442 6.187 22.408 1.00 6.09 ? 8 DC A "O5'" 1 ATOM 144 C "C5'" . DC A 1 8 ? 9.775 6.558 22.761 0.50 5.58 ? 8 DC A "C5'" 1 ATOM 145 C "C4'" . DC A 1 8 ? 9.743 7.474 23.959 0.50 5.74 ? 8 DC A "C4'" 1 ATOM 146 O "O4'" . DC A 1 8 ? 9.284 8.780 23.542 1.00 5.63 ? 8 DC A "O4'" 1 ATOM 147 C "C3'" . DC A 1 8 ? 8.774 7.009 25.048 1.00 5.61 ? 8 DC A "C3'" 1 ATOM 148 O "O3'" . DC A 1 8 ? 9.288 7.380 26.325 1.00 6.05 ? 8 DC A "O3'" 1 ATOM 149 C "C2'" . DC A 1 8 ? 7.549 7.860 24.789 1.00 5.53 ? 8 DC A "C2'" 1 ATOM 150 C "C1'" . DC A 1 8 ? 8.194 9.164 24.349 1.00 5.34 ? 8 DC A "C1'" 1 ATOM 151 N N1 . DC A 1 8 ? 7.338 10.083 23.574 1.00 4.69 ? 8 DC A N1 1 ATOM 152 C C2 . DC A 1 8 ? 7.769 11.409 23.379 1.00 4.20 ? 8 DC A C2 1 ATOM 153 O O2 . DC A 1 8 ? 8.855 11.776 23.866 1.00 3.82 ? 8 DC A O2 1 ATOM 154 N N3 . DC A 1 8 ? 6.973 12.266 22.680 1.00 3.76 ? 8 DC A N3 1 ATOM 155 C C4 . DC A 1 8 ? 5.785 11.850 22.209 1.00 3.85 ? 8 DC A C4 1 ATOM 156 N N4 . DC A 1 8 ? 5.007 12.735 21.570 1.00 3.60 ? 8 DC A N4 1 ATOM 157 C C5 . DC A 1 8 ? 5.336 10.509 22.387 1.00 4.33 ? 8 DC A C5 1 ATOM 158 C C6 . DC A 1 8 ? 6.138 9.667 23.066 1.00 4.54 ? 8 DC A C6 1 ATOM 159 P P . DG A 1 9 ? 10.360 6.441 27.049 1.00 5.95 ? 9 DG A P 1 ATOM 160 O OP1 . DG A 1 9 ? 11.279 5.985 25.978 1.00 6.44 ? 9 DG A OP1 1 ATOM 161 O OP2 . DG A 1 9 ? 9.615 5.434 27.859 1.00 6.59 ? 9 DG A OP2 1 ATOM 162 O "O5'" . DG A 1 9 ? 11.181 7.430 28.011 1.00 6.13 ? 9 DG A "O5'" 1 ATOM 163 C "C5'" . DG A 1 9 ? 12.440 8.001 27.610 1.00 5.14 ? 9 DG A "C5'" 1 ATOM 164 C "C4'" . DG A 1 9 ? 12.749 9.251 28.411 1.00 4.56 ? 9 DG A "C4'" 1 ATOM 165 O "O4'" . DG A 1 9 ? 11.942 10.351 27.943 1.00 3.40 ? 9 DG A "O4'" 1 ATOM 166 C "C3'" . DG A 1 9 ? 12.483 9.160 29.915 1.00 4.32 ? 9 DG A "C3'" 1 ATOM 167 O "O3'" . DG A 1 9 ? 13.429 9.993 30.620 1.00 4.56 ? 9 DG A "O3'" 1 ATOM 168 C "C2'" . DG A 1 9 ? 11.055 9.678 30.032 1.00 3.96 ? 9 DG A "C2'" 1 ATOM 169 C "C1'" . DG A 1 9 ? 10.996 10.738 28.935 1.00 3.40 ? 9 DG A "C1'" 1 ATOM 170 N N9 . DG A 1 9 ? 9.714 10.900 28.258 1.00 2.57 ? 9 DG A N9 1 ATOM 171 C C8 . DG A 1 9 ? 8.861 9.902 27.835 1.00 2.12 ? 9 DG A C8 1 ATOM 172 N N7 . DG A 1 9 ? 7.816 10.357 27.207 1.00 1.41 ? 9 DG A N7 1 ATOM 173 C C5 . DG A 1 9 ? 7.978 11.736 27.232 1.00 1.68 ? 9 DG A C5 1 ATOM 174 C C6 . DG A 1 9 ? 7.159 12.746 26.705 1.00 1.34 ? 9 DG A C6 1 ATOM 175 O O6 . DG A 1 9 ? 6.108 12.645 26.081 1.00 1.13 ? 9 DG A O6 1 ATOM 176 N N1 . DG A 1 9 ? 7.670 13.996 26.958 1.00 1.44 ? 9 DG A N1 1 ATOM 177 C C2 . DG A 1 9 ? 8.830 14.254 27.634 1.00 1.45 ? 9 DG A C2 1 ATOM 178 N N2 . DG A 1 9 ? 9.123 15.543 27.810 1.00 1.47 ? 9 DG A N2 1 ATOM 179 N N3 . DG A 1 9 ? 9.630 13.320 28.115 1.00 1.72 ? 9 DG A N3 1 ATOM 180 C C4 . DG A 1 9 ? 9.138 12.084 27.888 1.00 2.33 ? 9 DG A C4 1 ATOM 181 P P . DG A 1 10 ? 13.461 10.028 32.251 1.00 4.65 ? 10 DG A P 1 ATOM 182 O OP1 . DG A 1 10 ? 14.822 10.459 32.680 1.00 4.71 ? 10 DG A OP1 1 ATOM 183 O OP2 . DG A 1 10 ? 12.888 8.755 32.770 1.00 4.98 ? 10 DG A OP2 1 ATOM 184 O "O5'" . DG A 1 10 ? 12.422 11.177 32.632 1.00 4.28 ? 10 DG A "O5'" 1 ATOM 185 C "C5'" . DG A 1 10 ? 12.472 12.465 32.004 1.00 3.56 ? 10 DG A "C5'" 1 ATOM 186 C "C4'" . DG A 1 10 ? 11.307 13.322 32.443 1.00 3.69 ? 10 DG A "C4'" 1 ATOM 187 O "O4'" . DG A 1 10 ? 10.100 13.010 31.700 1.00 3.00 ? 10 DG A "O4'" 1 ATOM 188 C "C3'" . DG A 1 10 ? 10.928 13.191 33.915 1.00 3.59 ? 10 DG A "C3'" 1 ATOM 189 O "O3'" . DG A 1 10 ? 10.372 14.420 34.375 1.00 4.99 ? 10 DG A "O3'" 1 ATOM 190 C "C2'" . DG A 1 10 ? 9.757 12.230 33.853 1.00 3.27 ? 10 DG A "C2'" 1 ATOM 191 C "C1'" . DG A 1 10 ? 9.046 12.720 32.604 1.00 2.51 ? 10 DG A "C1'" 1 ATOM 192 N N9 . DG A 1 10 ? 8.218 11.717 31.958 1.00 2.44 ? 10 DG A N9 1 ATOM 193 C C8 . DG A 1 10 ? 8.389 10.356 32.014 1.00 2.59 ? 10 DG A C8 1 ATOM 194 N N7 . DG A 1 10 ? 7.581 9.706 31.226 1.00 3.03 ? 10 DG A N7 1 ATOM 195 C C5 . DG A 1 10 ? 6.812 10.699 30.632 1.00 2.94 ? 10 DG A C5 1 ATOM 196 C C6 . DG A 1 10 ? 5.790 10.596 29.677 1.00 2.90 ? 10 DG A C6 1 ATOM 197 O O6 . DG A 1 10 ? 5.375 9.576 29.110 1.00 3.69 ? 10 DG A O6 1 ATOM 198 N N1 . DG A 1 10 ? 5.239 11.840 29.373 1.00 2.49 ? 10 DG A N1 1 ATOM 199 C C2 . DG A 1 10 ? 5.633 13.034 29.913 1.00 2.29 ? 10 DG A C2 1 ATOM 200 N N2 . DG A 1 10 ? 4.941 14.120 29.500 1.00 2.42 ? 10 DG A N2 1 ATOM 201 N N3 . DG A 1 10 ? 6.624 13.148 30.801 1.00 2.31 ? 10 DG A N3 1 ATOM 202 C C4 . DG A 1 10 ? 7.161 11.943 31.110 1.00 2.70 ? 10 DG A C4 1 #