data_278D # _entry.id 278D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 278D pdb_0000278d 10.2210/pdb278d/pdb RCSB DDF068 ? ? WWPDB D_1000177690 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1996-09-16 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 278D _pdbx_database_status.recvd_initial_deposition_date 1996-07-22 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Gao, Y.-G.' 1 'Priebe, W.' 2 'Wang, A.H.-J.' 3 # _citation.id primary _citation.title ;Substitutions at C2' of daunosamine in the anticancer drug daunorubicin alter its DNA-binding sequence specificity. ; _citation.journal_abbrev Eur.J.Biochem. _citation.journal_volume 240 _citation.page_first 331 _citation.page_last 335 _citation.year 1996 _citation.journal_id_ASTM EJBCAI _citation.country IX _citation.journal_id_ISSN 0014-2956 _citation.journal_id_CSD 0262 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 8841395 _citation.pdbx_database_id_DOI 10.1111/j.1432-1033.1996.0331h.x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gao, Y.G.' 1 ? primary 'Priebe, W.' 2 ? primary 'Wang, A.H.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;DNA (5'-D(*CP*GP*(G49)P*CP*CP*G)-3' ; 1824.232 1 ? ? ? ? 2 non-polymer syn "2'-BROMO-4'-EPIDAUNORUBICIN" 606.416 1 ? ? ? ? 3 water nat water 18.015 43 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(G49)(DC)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGGCCG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "2'-BROMO-4'-EPIDAUNORUBICIN" DM8 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 G49 n 1 4 DC n 1 5 DC n 1 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DM8 non-polymer . "2'-BROMO-4'-EPIDAUNORUBICIN" 'WP401; DAUNOMYCIN DERIVATIVE; DAUNORUBICIN DERIVATIVE' 'C27 H28 Br N O10' 606.416 G49 'DNA linking' n "N2-METHYL-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O7 P' 361.248 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 G49 3 3 3 G49 +G A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DM8 1 7 7 DM8 DM8 A . C 3 HOH 1 8 8 HOH HOH A . C 3 HOH 2 9 9 HOH HOH A . C 3 HOH 3 10 10 HOH HOH A . C 3 HOH 4 11 11 HOH HOH A . C 3 HOH 5 12 12 HOH HOH A . C 3 HOH 6 13 13 HOH HOH A . C 3 HOH 7 14 14 HOH HOH A . C 3 HOH 8 15 15 HOH HOH A . C 3 HOH 9 16 16 HOH HOH A . C 3 HOH 10 17 17 HOH HOH A . C 3 HOH 11 18 18 HOH HOH A . C 3 HOH 12 19 19 HOH HOH A . C 3 HOH 13 20 20 HOH HOH A . C 3 HOH 14 21 21 HOH HOH A . C 3 HOH 15 22 22 HOH HOH A . C 3 HOH 16 23 23 HOH HOH A . C 3 HOH 17 24 24 HOH HOH A . C 3 HOH 18 25 25 HOH HOH A . C 3 HOH 19 26 26 HOH HOH A . C 3 HOH 20 27 27 HOH HOH A . C 3 HOH 21 28 28 HOH HOH A . C 3 HOH 22 29 29 HOH HOH A . C 3 HOH 23 30 30 HOH HOH A . C 3 HOH 24 31 31 HOH HOH A . C 3 HOH 25 32 32 HOH HOH A . C 3 HOH 26 33 33 HOH HOH A . C 3 HOH 27 34 34 HOH HOH A . C 3 HOH 28 35 35 HOH HOH A . C 3 HOH 29 36 36 HOH HOH A . C 3 HOH 30 37 37 HOH HOH A . C 3 HOH 31 38 38 HOH HOH A . C 3 HOH 32 39 39 HOH HOH A . C 3 HOH 33 40 40 HOH HOH A . C 3 HOH 34 41 41 HOH HOH A . C 3 HOH 35 42 42 HOH HOH A . C 3 HOH 36 43 43 HOH HOH A . C 3 HOH 37 44 44 HOH HOH A . C 3 HOH 38 45 45 HOH HOH A . C 3 HOH 39 46 46 HOH HOH A . C 3 HOH 40 47 47 HOH HOH A . C 3 HOH 41 48 48 HOH HOH A . C 3 HOH 42 49 49 HOH HOH A . C 3 HOH 43 50 50 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MSC 'data collection' . ? 1 NUCLSQ refinement . ? 2 MSC 'data reduction' . ? 3 # _cell.entry_id 278D _cell.length_a 28.250 _cell.length_b 28.250 _cell.length_c 53.670 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 278D _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # _exptl.entry_id 278D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 56.25 _exptl_crystal.density_Matthews 2.81 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 298.00 _exptl_crystal_grow.temp_details 'ROOM TEMPERATURE' _exptl_crystal_grow.pH 6.00 _exptl_crystal_grow.pdbx_details 'pH 6.00, VAPOR DIFFUSION, temperature 298.00K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 BACL2 ? ? ? 1 4 1 'NA CACODYLATE' ? ? ? 1 5 1 SPERMINE ? ? ? 1 6 2 WATER ? ? ? 1 7 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 293.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IIC' _diffrn_detector.pdbx_collection_date 1995-08-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 278D _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low ? _reflns.d_resolution_high ? _reflns.number_obs ? _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.000 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 278D _refine.ls_number_reflns_obs 1860 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 4.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.000 _refine.ls_d_res_high 1.800 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.183 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 120 _refine_hist.pdbx_number_atoms_ligand 40 _refine_hist.number_atoms_solvent 43 _refine_hist.number_atoms_total 203 _refine_hist.d_res_high 1.800 _refine_hist.d_res_low 10.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function n_bond_d 0.019 ? ? ? 'X-RAY DIFFRACTION' ? n_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_angle_it ? ? ? ? 'X-RAY DIFFRACTION' ? n_bond_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_dihedral_angle_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_impr_tor ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_sugar_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_phos_bond_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? n_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ? n_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? n_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 278D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 278D _struct.title ;SUBSTITUTIONS AT C2' OF DAUNOSAMINE IN THE ANTICANCER DAUNORUBICIN ALTER ITS DNA-BINDING SEQUENCE SPECIFICITY ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 278D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, MODIFIED, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 278D _struct_ref.pdbx_db_accession 278D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 278D _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 278D _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 6 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 28.2500000000 -1.0000000000 0.0000000000 0.0000000000 28.2500000000 0.0000000000 0.0000000000 -1.0000000000 26.8350000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 2 "O3'" ? ? ? 1_555 A G49 3 P ? ? A DG 2 A G49 3 1_555 ? ? ? ? ? ? ? 1.595 ? ? covale2 covale one ? A G49 3 "O3'" ? ? ? 1_555 A DC 4 P ? ? A G49 3 A DC 4 1_555 ? ? ? ? ? ? ? 1.581 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1 A DG 6 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 2 A DC 5 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G49 3 N1 ? ? ? 1_555 A DC 4 N3 ? ? A G49 3 A DC 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G49 3 N2 ? ? ? 1_555 A DC 4 O2 ? ? A G49 3 A DC 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G49 3 O6 ? ? ? 1_555 A DC 4 N4 ? ? A G49 3 A DC 4 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 N3 ? ? ? 1_555 A G49 3 N1 ? ? A DC 4 A G49 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A G49 3 O6 ? ? A DC 4 A G49 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 4 O2 ? ? ? 1_555 A G49 3 N2 ? ? A DC 4 A G49 3 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 5 A DG 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 6 A DC 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A DM8 7 ? 8 'BINDING SITE FOR RESIDUE DM8 A 7' 'DRUG BINDING SITE' ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DC A 1 ? DC A 1 . ? 8_665 ? 2 AC1 8 DG A 2 ? DG A 2 . ? 8_665 ? 3 AC1 8 G49 A 3 ? G49 A 3 . ? 8_665 ? 4 AC1 8 DC A 5 ? DC A 5 . ? 1_555 ? 5 AC1 8 DG A 6 ? DG A 6 . ? 1_555 ? 6 AC1 8 HOH C . ? HOH A 8 . ? 1_555 ? 7 AC1 8 HOH C . ? HOH A 12 . ? 1_555 ? 8 AC1 8 HOH C . ? HOH A 19 . ? 1_555 ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 32 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 34 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.11 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 CM2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 G49 _pdbx_validate_symm_contact.auth_seq_id_1 3 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 "N3'" _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 DM8 _pdbx_validate_symm_contact.auth_seq_id_2 7 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 8_665 _pdbx_validate_symm_contact.dist 1.89 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.36 108.30 3.06 0.30 N 2 1 C2 A DC 1 ? ? N3 A DC 1 ? ? C4 A DC 1 ? ? 124.59 119.90 4.69 0.50 N 3 1 N3 A DC 1 ? ? C4 A DC 1 ? ? C5 A DC 1 ? ? 119.19 121.90 -2.71 0.40 N 4 1 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 122.95 118.00 4.95 0.70 N 5 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 97.10 102.40 -5.30 0.80 N 6 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 114.03 108.30 5.73 0.30 N 7 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 114.53 111.50 3.03 0.50 N 8 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 124.15 128.60 -4.45 0.60 N 9 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A G49 3 ? ? 129.40 119.70 9.70 1.20 Y 10 1 OP1 A DC 5 ? ? P A DC 5 ? ? OP2 A DC 5 ? ? 133.01 119.60 13.41 1.50 N 11 1 "O5'" A DC 5 ? ? "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? 104.51 109.40 -4.89 0.80 N 12 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 117.54 108.30 9.24 0.30 N 13 1 "C3'" A DC 5 ? ? "O3'" A DC 5 ? ? P A DG 6 ? ? 128.69 119.70 8.99 1.20 Y 14 1 C5 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 124.77 128.60 -3.83 0.60 N # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id G49 _pdbx_struct_mod_residue.label_seq_id 3 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id G49 _pdbx_struct_mod_residue.auth_seq_id 3 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DG _pdbx_struct_mod_residue.details ? # _struct_site_keywords.site_id 'DRUG BINDING SITE' _struct_site_keywords.text INTERCALATION # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 DM8 C1 C Y N 72 DM8 C2 C Y N 73 DM8 C3 C Y N 74 DM8 C4 C Y N 75 DM8 C5 C N N 76 DM8 C6 C Y N 77 DM8 C7 C N S 78 DM8 C8 C N N 79 DM8 C9 C N S 80 DM8 C10 C N N 81 DM8 C11 C Y N 82 DM8 C12 C N N 83 DM8 C13 C N N 84 DM8 C14 C N N 85 DM8 C15 C Y N 86 DM8 C16 C Y N 87 DM8 C17 C Y N 88 DM8 C18 C Y N 89 DM8 C19 C Y N 90 DM8 C20 C Y N 91 DM8 C21 C N N 92 DM8 O4 O N N 93 DM8 O5 O N N 94 DM8 O6 O N N 95 DM8 O7 O N N 96 DM8 O9 O N N 97 DM8 O11 O N N 98 DM8 O12 O N N 99 DM8 O13 O N N 100 DM8 "C1'" C N R 101 DM8 "C2'" C N R 102 DM8 "C3'" C N R 103 DM8 "C4'" C N R 104 DM8 "C5'" C N S 105 DM8 "C6'" C N N 106 DM8 "O5'" O N N 107 DM8 "O4'" O N N 108 DM8 "N3'" N N N 109 DM8 BR BR N N 110 DM8 H1 H N N 111 DM8 H2 H N N 112 DM8 H3 H N N 113 DM8 H7 H N N 114 DM8 H81 H N N 115 DM8 H82 H N N 116 DM8 H101 H N N 117 DM8 H102 H N N 118 DM8 H141 H N N 119 DM8 H142 H N N 120 DM8 H143 H N N 121 DM8 H211 H N N 122 DM8 H212 H N N 123 DM8 H213 H N N 124 DM8 H6 H N N 125 DM8 H9 H N N 126 DM8 H11 H N N 127 DM8 "H1'" H N N 128 DM8 "H2'" H N N 129 DM8 "H3'" H N N 130 DM8 "H4'" H N N 131 DM8 "H5'" H N N 132 DM8 "H6'1" H N N 133 DM8 "H6'2" H N N 134 DM8 "H6'3" H N N 135 DM8 "HO4'" H N N 136 DM8 "HN'1" H N N 137 DM8 "HN'2" H N N 138 G49 P P N N 139 G49 O1P O N N 140 G49 O2P O N N 141 G49 O3P O N N 142 G49 "O5'" O N N 143 G49 "C5'" C N N 144 G49 "C4'" C N R 145 G49 "O4'" O N N 146 G49 "C3'" C N S 147 G49 "O3'" O N N 148 G49 "C2'" C N N 149 G49 "C1'" C N R 150 G49 N9 N Y N 151 G49 C8 C Y N 152 G49 N7 N Y N 153 G49 C5 C Y N 154 G49 C6 C N N 155 G49 O6 O N N 156 G49 N1 N N N 157 G49 C2 C N N 158 G49 N2 N N N 159 G49 CM2 C N N 160 G49 N3 N N N 161 G49 C4 C Y N 162 G49 H2P H N N 163 G49 H3P H N N 164 G49 "H5'1" H N N 165 G49 "H5'2" H N N 166 G49 "H4'" H N N 167 G49 "H3'" H N N 168 G49 HA H N N 169 G49 "H2'1" H N N 170 G49 "H2'2" H N N 171 G49 "H1'" H N N 172 G49 H8 H N N 173 G49 H1 H N N 174 G49 H2 H N N 175 G49 HM21 H N N 176 G49 HM22 H N N 177 G49 HM23 H N N 178 HOH O O N N 179 HOH H1 H N N 180 HOH H2 H N N 181 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 DM8 C1 C2 doub Y N 75 DM8 C1 C15 sing Y N 76 DM8 C1 H1 sing N N 77 DM8 C2 C3 sing Y N 78 DM8 C2 H2 sing N N 79 DM8 C3 C4 doub Y N 80 DM8 C3 H3 sing N N 81 DM8 C4 C16 sing Y N 82 DM8 C4 O4 sing N N 83 DM8 C5 C16 sing N N 84 DM8 C5 C17 sing N N 85 DM8 C5 O5 doub N N 86 DM8 C6 C17 doub Y N 87 DM8 C6 C20 sing Y N 88 DM8 C6 O6 sing N N 89 DM8 C7 C8 sing N N 90 DM8 C7 C20 sing N N 91 DM8 C7 O7 sing N N 92 DM8 C7 H7 sing N N 93 DM8 C8 C9 sing N N 94 DM8 C8 H81 sing N N 95 DM8 C8 H82 sing N N 96 DM8 C9 C10 sing N N 97 DM8 C9 C13 sing N N 98 DM8 C9 O9 sing N N 99 DM8 C10 C19 sing N N 100 DM8 C10 H101 sing N N 101 DM8 C10 H102 sing N N 102 DM8 C11 C18 doub Y N 103 DM8 C11 C19 sing Y N 104 DM8 C11 O11 sing N N 105 DM8 C12 C15 sing N N 106 DM8 C12 C18 sing N N 107 DM8 C12 O12 doub N N 108 DM8 C13 C14 sing N N 109 DM8 C13 O13 doub N N 110 DM8 C14 H141 sing N N 111 DM8 C14 H142 sing N N 112 DM8 C14 H143 sing N N 113 DM8 C15 C16 doub Y N 114 DM8 C17 C18 sing Y N 115 DM8 C19 C20 doub Y N 116 DM8 C21 O4 sing N N 117 DM8 C21 H211 sing N N 118 DM8 C21 H212 sing N N 119 DM8 C21 H213 sing N N 120 DM8 O6 H6 sing N N 121 DM8 O7 "C1'" sing N N 122 DM8 O9 H9 sing N N 123 DM8 O11 H11 sing N N 124 DM8 "C1'" "C2'" sing N N 125 DM8 "C1'" "O5'" sing N N 126 DM8 "C1'" "H1'" sing N N 127 DM8 "C2'" "C3'" sing N N 128 DM8 "C2'" BR sing N N 129 DM8 "C2'" "H2'" sing N N 130 DM8 "C3'" "C4'" sing N N 131 DM8 "C3'" "N3'" sing N N 132 DM8 "C3'" "H3'" sing N N 133 DM8 "C4'" "C5'" sing N N 134 DM8 "C4'" "O4'" sing N N 135 DM8 "C4'" "H4'" sing N N 136 DM8 "C5'" "C6'" sing N N 137 DM8 "C5'" "O5'" sing N N 138 DM8 "C5'" "H5'" sing N N 139 DM8 "C6'" "H6'1" sing N N 140 DM8 "C6'" "H6'2" sing N N 141 DM8 "C6'" "H6'3" sing N N 142 DM8 "O4'" "HO4'" sing N N 143 DM8 "N3'" "HN'1" sing N N 144 DM8 "N3'" "HN'2" sing N N 145 G49 P O1P doub N N 146 G49 P O2P sing N N 147 G49 P O3P sing N N 148 G49 P "O5'" sing N N 149 G49 O2P H2P sing N N 150 G49 O3P H3P sing N N 151 G49 "O5'" "C5'" sing N N 152 G49 "C5'" "C4'" sing N N 153 G49 "C5'" "H5'1" sing N N 154 G49 "C5'" "H5'2" sing N N 155 G49 "C4'" "O4'" sing N N 156 G49 "C4'" "C3'" sing N N 157 G49 "C4'" "H4'" sing N N 158 G49 "O4'" "C1'" sing N N 159 G49 "C3'" "O3'" sing N N 160 G49 "C3'" "C2'" sing N N 161 G49 "C3'" "H3'" sing N N 162 G49 "O3'" HA sing N N 163 G49 "C2'" "C1'" sing N N 164 G49 "C2'" "H2'1" sing N N 165 G49 "C2'" "H2'2" sing N N 166 G49 "C1'" N9 sing N N 167 G49 "C1'" "H1'" sing N N 168 G49 N9 C8 sing Y N 169 G49 N9 C4 sing Y N 170 G49 C8 N7 doub Y N 171 G49 C8 H8 sing N N 172 G49 N7 C5 sing Y N 173 G49 C5 C6 sing N N 174 G49 C5 C4 doub Y N 175 G49 C6 O6 doub N N 176 G49 C6 N1 sing N N 177 G49 N1 C2 sing N N 178 G49 N1 H1 sing N N 179 G49 C2 N2 sing N N 180 G49 C2 N3 doub N N 181 G49 N2 CM2 sing N N 182 G49 N2 H2 sing N N 183 G49 CM2 HM21 sing N N 184 G49 CM2 HM22 sing N N 185 G49 CM2 HM23 sing N N 186 G49 N3 C4 sing N N 187 HOH O H1 sing N N 188 HOH O H2 sing N N 189 # _ndb_struct_conf_na.entry_id 278D _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 6 8_665 0.146 -0.187 0.275 8.221 2.878 -3.049 1 A_DC1:DG6_A A 1 ? A 6 ? 19 1 1 A DG 2 1_555 A DC 5 8_665 -0.138 -0.173 0.343 -14.259 1.711 -0.691 2 A_DG2:DC5_A A 2 ? A 5 ? 19 1 1 A G49 3 1_555 A DC 4 8_665 -0.140 -0.207 0.519 -6.746 -7.872 1.506 3 A_G493:DC4_A A 3 ? A 4 ? 19 1 1 A DC 4 1_555 A G49 3 8_665 0.140 -0.207 0.519 6.746 -7.872 1.506 4 A_DC4:G493_A A 4 ? A 3 ? 19 1 1 A DC 5 1_555 A DG 2 8_665 0.138 -0.173 0.343 14.259 1.711 -0.691 5 A_DC5:DG2_A A 5 ? A 2 ? 19 1 1 A DG 6 1_555 A DC 1 8_665 -0.146 -0.187 0.275 -8.221 2.878 -3.049 6 A_DG6:DC1_A A 6 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 6 8_665 A DG 2 1_555 A DC 5 8_665 1.310 0.964 6.976 -0.453 -2.218 33.649 2.426 -2.415 6.882 -3.826 0.781 33.723 1 AA_DC1DG2:DC5DG6_AA A 1 ? A 6 ? A 2 ? A 5 ? 1 A DG 2 1_555 A DC 5 8_665 A G49 3 1_555 A DC 4 8_665 -1.409 0.729 3.203 -3.873 2.892 31.158 0.796 1.861 3.401 5.343 7.156 31.522 2 AA_DG2G493:DC4DC5_AA A 2 ? A 5 ? A 3 ? A 4 ? 1 A G49 3 1_555 A DC 4 8_665 A DC 4 1_555 A G49 3 8_665 0.000 -0.315 3.068 0.000 -0.205 32.351 -0.531 0.000 3.069 -0.367 0.000 32.352 3 AA_G493DC4:G493DC4_AA A 3 ? A 4 ? A 4 ? A 3 ? 1 A DC 4 1_555 A G49 3 8_665 A DC 5 1_555 A DG 2 8_665 1.409 0.729 3.203 3.873 2.892 31.158 0.796 -1.861 3.401 5.343 -7.156 31.522 4 AA_DC4DC5:DG2G493_AA A 4 ? A 3 ? A 5 ? A 2 ? 1 A DC 5 1_555 A DG 2 8_665 A DG 6 1_555 A DC 1 8_665 -1.310 0.964 6.976 0.453 -2.218 33.649 2.426 2.415 6.882 -3.826 -0.781 33.723 5 AA_DC5DG6:DC1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ? # _atom_sites.entry_id 278D _atom_sites.fract_transf_matrix[1][1] 0.035398 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.035398 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018632 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DC A 1 1 ? 9.355 20.170 22.563 1.00 18.91 ? 1 DC A "O5'" 1 ATOM 2 C "C5'" . DC A 1 1 ? 9.657 21.043 23.684 1.00 17.71 ? 1 DC A "C5'" 1 ATOM 3 C "C4'" . DC A 1 1 ? 11.135 21.018 23.895 1.00 17.43 ? 1 DC A "C4'" 1 ATOM 4 O "O4'" . DC A 1 1 ? 11.462 19.925 24.738 1.00 16.76 ? 1 DC A "O4'" 1 ATOM 5 C "C3'" . DC A 1 1 ? 12.041 20.857 22.678 1.00 17.37 ? 1 DC A "C3'" 1 ATOM 6 O "O3'" . DC A 1 1 ? 13.239 21.625 22.905 1.00 18.18 ? 1 DC A "O3'" 1 ATOM 7 C "C2'" . DC A 1 1 ? 12.318 19.360 22.636 1.00 16.86 ? 1 DC A "C2'" 1 ATOM 8 C "C1'" . DC A 1 1 ? 12.394 19.041 24.153 1.00 16.08 ? 1 DC A "C1'" 1 ATOM 9 N N1 . DC A 1 1 ? 12.002 17.651 24.348 1.00 15.02 ? 1 DC A N1 1 ATOM 10 C C2 . DC A 1 1 ? 12.993 16.685 24.543 1.00 14.41 ? 1 DC A C2 1 ATOM 11 O O2 . DC A 1 1 ? 14.151 17.035 24.590 1.00 14.23 ? 1 DC A O2 1 ATOM 12 N N3 . DC A 1 1 ? 12.569 15.400 24.643 1.00 13.79 ? 1 DC A N3 1 ATOM 13 C C4 . DC A 1 1 ? 11.298 15.024 24.632 1.00 13.80 ? 1 DC A C4 1 ATOM 14 N N4 . DC A 1 1 ? 10.920 13.756 24.722 1.00 13.61 ? 1 DC A N4 1 ATOM 15 C C5 . DC A 1 1 ? 10.273 16.018 24.443 1.00 14.00 ? 1 DC A C5 1 ATOM 16 C C6 . DC A 1 1 ? 10.691 17.275 24.290 1.00 14.52 ? 1 DC A C6 1 ATOM 17 P P . DG A 1 2 ? 13.804 22.710 21.878 1.00 21.92 ? 2 DG A P 1 ATOM 18 O OP1 . DG A 1 2 ? 14.883 23.362 22.605 1.00 21.47 ? 2 DG A OP1 1 ATOM 19 O OP2 . DG A 1 2 ? 12.640 23.391 21.283 1.00 21.67 ? 2 DG A OP2 1 ATOM 20 O "O5'" . DG A 1 2 ? 14.451 21.701 20.788 1.00 19.03 ? 2 DG A "O5'" 1 ATOM 21 C "C5'" . DG A 1 2 ? 15.781 21.125 21.088 1.00 18.03 ? 2 DG A "C5'" 1 ATOM 22 C "C4'" . DG A 1 2 ? 16.140 20.309 19.845 1.00 17.66 ? 2 DG A "C4'" 1 ATOM 23 O "O4'" . DG A 1 2 ? 15.366 19.137 19.829 1.00 17.13 ? 2 DG A "O4'" 1 ATOM 24 C "C3'" . DG A 1 2 ? 15.880 21.009 18.518 1.00 17.58 ? 2 DG A "C3'" 1 ATOM 25 O "O3'" . DG A 1 2 ? 16.919 20.806 17.564 1.00 18.48 ? 2 DG A "O3'" 1 ATOM 26 C "C2'" . DG A 1 2 ? 14.586 20.348 18.012 1.00 17.15 ? 2 DG A "C2'" 1 ATOM 27 C "C1'" . DG A 1 2 ? 14.897 18.945 18.481 1.00 16.33 ? 2 DG A "C1'" 1 ATOM 28 N N9 . DG A 1 2 ? 13.702 18.120 18.381 1.00 15.41 ? 2 DG A N9 1 ATOM 29 C C8 . DG A 1 2 ? 12.386 18.467 18.339 1.00 15.10 ? 2 DG A C8 1 ATOM 30 N N7 . DG A 1 2 ? 11.572 17.448 18.207 1.00 14.70 ? 2 DG A N7 1 ATOM 31 C C5 . DG A 1 2 ? 12.431 16.343 18.139 1.00 14.38 ? 2 DG A C5 1 ATOM 32 C C6 . DG A 1 2 ? 12.194 14.959 18.002 1.00 14.21 ? 2 DG A C6 1 ATOM 33 O O6 . DG A 1 2 ? 11.067 14.451 17.923 1.00 14.19 ? 2 DG A O6 1 ATOM 34 N N1 . DG A 1 2 ? 13.318 14.191 17.996 1.00 13.69 ? 2 DG A N1 1 ATOM 35 C C2 . DG A 1 2 ? 14.575 14.708 18.112 1.00 13.67 ? 2 DG A C2 1 ATOM 36 N N2 . DG A 1 2 ? 15.609 13.857 18.081 1.00 13.26 ? 2 DG A N2 1 ATOM 37 N N3 . DG A 1 2 ? 14.877 15.979 18.260 1.00 14.00 ? 2 DG A N3 1 ATOM 38 C C4 . DG A 1 2 ? 13.742 16.741 18.265 1.00 14.68 ? 2 DG A C4 1 HETATM 39 P P . G49 A 1 3 ? 17.911 21.868 16.906 1.00 22.12 ? 3 G49 A P 1 HETATM 40 O O1P . G49 A 1 3 ? 18.224 22.905 17.938 1.00 23.68 ? 3 G49 A O1P 1 HETATM 41 O O2P . G49 A 1 3 ? 17.174 22.306 15.700 1.00 22.89 ? 3 G49 A O2P 1 HETATM 42 O "O5'" . G49 A 1 3 ? 19.272 21.038 16.495 1.00 17.48 ? 3 G49 A "O5'" 1 HETATM 43 C "C5'" . G49 A 1 3 ? 20.148 20.371 17.396 1.00 16.32 ? 3 G49 A "C5'" 1 HETATM 44 C "C4'" . G49 A 1 3 ? 20.363 18.987 16.817 1.00 16.18 ? 3 G49 A "C4'" 1 HETATM 45 O "O4'" . G49 A 1 3 ? 19.199 18.193 16.838 1.00 15.94 ? 3 G49 A "O4'" 1 HETATM 46 C "C3'" . G49 A 1 3 ? 20.826 19.018 15.358 1.00 16.03 ? 3 G49 A "C3'" 1 HETATM 47 O "O3'" . G49 A 1 3 ? 22.071 18.337 15.268 1.00 16.26 ? 3 G49 A "O3'" 1 HETATM 48 C "C2'" . G49 A 1 3 ? 19.690 18.363 14.568 1.00 15.75 ? 3 G49 A "C2'" 1 HETATM 49 C "C1'" . G49 A 1 3 ? 19.083 17.439 15.589 1.00 15.14 ? 3 G49 A "C1'" 1 HETATM 50 N N9 . G49 A 1 3 ? 17.662 17.219 15.352 1.00 14.55 ? 3 G49 A N9 1 HETATM 51 C C8 . G49 A 1 3 ? 16.702 18.224 15.310 1.00 14.27 ? 3 G49 A C8 1 HETATM 52 N N7 . G49 A 1 3 ? 15.493 17.784 15.094 1.00 13.83 ? 3 G49 A N7 1 HETATM 53 C C5 . G49 A 1 3 ? 15.665 16.402 15.031 1.00 13.87 ? 3 G49 A C5 1 HETATM 54 C C6 . G49 A 1 3 ? 14.699 15.377 14.842 1.00 13.83 ? 3 G49 A C6 1 HETATM 55 O O6 . G49 A 1 3 ? 13.462 15.527 14.705 1.00 13.83 ? 3 G49 A O6 1 HETATM 56 N N1 . G49 A 1 3 ? 15.230 14.126 14.842 1.00 13.69 ? 3 G49 A N1 1 HETATM 57 C C2 . G49 A 1 3 ? 16.541 13.872 14.973 1.00 13.71 ? 3 G49 A C2 1 HETATM 58 N N2 . G49 A 1 3 ? 16.897 12.578 14.936 1.00 14.19 ? 3 G49 A N2 1 HETATM 59 C CM2 . G49 A 1 3 ? 18.334 12.423 15.036 1.00 14.45 ? 3 G49 A CM2 1 HETATM 60 N N3 . G49 A 1 3 ? 17.515 14.784 15.184 1.00 14.07 ? 3 G49 A N3 1 HETATM 61 C C4 . G49 A 1 3 ? 16.973 16.038 15.194 1.00 13.96 ? 3 G49 A C4 1 ATOM 62 P P . DC A 1 4 ? 22.913 18.168 13.941 1.00 18.51 ? 4 DC A P 1 ATOM 63 O OP1 . DC A 1 4 ? 24.289 17.970 14.510 1.00 18.96 ? 4 DC A OP1 1 ATOM 64 O OP2 . DC A 1 4 ? 22.549 19.349 13.146 1.00 19.90 ? 4 DC A OP2 1 ATOM 65 O "O5'" . DC A 1 4 ? 22.441 16.818 13.246 1.00 16.24 ? 4 DC A "O5'" 1 ATOM 66 C "C5'" . DC A 1 4 ? 22.634 15.564 13.894 1.00 15.64 ? 4 DC A "C5'" 1 ATOM 67 C "C4'" . DC A 1 4 ? 21.927 14.547 13.051 1.00 15.69 ? 4 DC A "C4'" 1 ATOM 68 O "O4'" . DC A 1 4 ? 20.529 14.730 13.088 1.00 15.22 ? 4 DC A "O4'" 1 ATOM 69 C "C3'" . DC A 1 4 ? 22.297 14.589 11.555 1.00 15.84 ? 4 DC A "C3'" 1 ATOM 70 O "O3'" . DC A 1 4 ? 22.913 13.332 11.208 1.00 16.87 ? 4 DC A "O3'" 1 ATOM 71 C "C2'" . DC A 1 4 ? 20.984 14.843 10.839 1.00 15.51 ? 4 DC A "C2'" 1 ATOM 72 C "C1'" . DC A 1 4 ? 19.990 14.309 11.808 1.00 14.66 ? 4 DC A "C1'" 1 ATOM 73 N N1 . DC A 1 4 ? 18.696 14.962 11.703 1.00 14.11 ? 4 DC A N1 1 ATOM 74 C C2 . DC A 1 4 ? 17.600 14.126 11.708 1.00 13.66 ? 4 DC A C2 1 ATOM 75 O O2 . DC A 1 4 ? 17.733 12.903 11.761 1.00 13.77 ? 4 DC A O2 1 ATOM 76 N N3 . DC A 1 4 ? 16.391 14.730 11.634 1.00 13.55 ? 4 DC A N3 1 ATOM 77 C C4 . DC A 1 4 ? 16.247 16.075 11.592 1.00 13.29 ? 4 DC A C4 1 ATOM 78 N N4 . DC A 1 4 ? 15.013 16.544 11.534 1.00 13.39 ? 4 DC A N4 1 ATOM 79 C C5 . DC A 1 4 ? 17.385 16.919 11.571 1.00 13.44 ? 4 DC A C5 1 ATOM 80 C C6 . DC A 1 4 ? 18.583 16.326 11.634 1.00 13.71 ? 4 DC A C6 1 ATOM 81 P P . DC A 1 5 ? 23.978 13.276 9.959 1.00 21.06 ? 5 DC A P 1 ATOM 82 O OP1 . DC A 1 5 ? 24.797 12.123 10.312 1.00 21.58 ? 5 DC A OP1 1 ATOM 83 O OP2 . DC A 1 5 ? 24.311 14.699 9.585 1.00 21.75 ? 5 DC A OP2 1 ATOM 84 O "O5'" . DC A 1 5 ? 22.916 12.852 8.801 1.00 17.77 ? 5 DC A "O5'" 1 ATOM 85 C "C5'" . DC A 1 5 ? 22.379 11.524 8.811 1.00 17.07 ? 5 DC A "C5'" 1 ATOM 86 C "C4'" . DC A 1 5 ? 21.230 11.572 7.826 1.00 16.80 ? 5 DC A "C4'" 1 ATOM 87 O "O4'" . DC A 1 5 ? 20.196 12.383 8.421 1.00 16.35 ? 5 DC A "O4'" 1 ATOM 88 C "C3'" . DC A 1 5 ? 21.543 12.149 6.457 1.00 16.70 ? 5 DC A "C3'" 1 ATOM 89 O "O3'" . DC A 1 5 ? 20.956 11.355 5.425 1.00 17.70 ? 5 DC A "O3'" 1 ATOM 90 C "C2'" . DC A 1 5 ? 20.905 13.538 6.504 1.00 16.38 ? 5 DC A "C2'" 1 ATOM 91 C "C1'" . DC A 1 5 ? 19.676 13.182 7.394 1.00 15.69 ? 5 DC A "C1'" 1 ATOM 92 N N1 . DC A 1 5 ? 18.976 14.408 7.779 1.00 15.13 ? 5 DC A N1 1 ATOM 93 C C2 . DC A 1 5 ? 17.603 14.208 7.995 1.00 14.74 ? 5 DC A C2 1 ATOM 94 O O2 . DC A 1 5 ? 17.162 13.047 7.984 1.00 14.37 ? 5 DC A O2 1 ATOM 95 N N3 . DC A 1 5 ? 16.854 15.321 8.206 1.00 14.58 ? 5 DC A N3 1 ATOM 96 C C4 . DC A 1 5 ? 17.416 16.558 8.237 1.00 14.51 ? 5 DC A C4 1 ATOM 97 N N4 . DC A 1 5 ? 16.626 17.634 8.453 1.00 14.40 ? 5 DC A N4 1 ATOM 98 C C5 . DC A 1 5 ? 18.803 16.733 8.053 1.00 14.54 ? 5 DC A C5 1 ATOM 99 C C6 . DC A 1 5 ? 19.541 15.643 7.821 1.00 14.82 ? 5 DC A C6 1 ATOM 100 P P . DG A 1 6 ? 21.670 10.219 4.466 1.00 21.37 ? 6 DG A P 1 ATOM 101 O OP1 . DG A 1 6 ? 22.371 9.284 5.414 1.00 24.25 ? 6 DG A OP1 1 ATOM 102 O OP2 . DG A 1 6 ? 22.393 11.140 3.566 1.00 20.89 ? 6 DG A OP2 1 ATOM 103 O "O5'" . DG A 1 6 ? 20.442 9.448 3.818 1.00 17.86 ? 6 DG A "O5'" 1 ATOM 104 C "C5'" . DG A 1 6 ? 19.518 8.584 4.450 1.00 16.65 ? 6 DG A "C5'" 1 ATOM 105 C "C4'" . DG A 1 6 ? 18.527 8.070 3.439 1.00 16.30 ? 6 DG A "C4'" 1 ATOM 106 O "O4'" . DG A 1 6 ? 17.626 9.092 3.049 1.00 16.21 ? 6 DG A "O4'" 1 ATOM 107 C "C3'" . DG A 1 6 ? 19.114 7.561 2.117 1.00 16.06 ? 6 DG A "C3'" 1 ATOM 108 O "O3'" . DG A 1 6 ? 18.295 6.474 1.701 1.00 16.59 ? 6 DG A "O3'" 1 ATOM 109 C "C2'" . DG A 1 6 ? 19.083 8.810 1.238 1.00 15.54 ? 6 DG A "C2'" 1 ATOM 110 C "C1'" . DG A 1 6 ? 17.789 9.457 1.622 1.00 14.80 ? 6 DG A "C1'" 1 ATOM 111 N N9 . DG A 1 6 ? 17.758 10.917 1.559 1.00 13.80 ? 6 DG A N9 1 ATOM 112 C C8 . DG A 1 6 ? 18.815 11.784 1.627 1.00 13.52 ? 6 DG A C8 1 ATOM 113 N N7 . DG A 1 6 ? 18.464 13.036 1.606 1.00 13.37 ? 6 DG A N7 1 ATOM 114 C C5 . DG A 1 6 ? 17.094 13.004 1.585 1.00 13.03 ? 6 DG A C5 1 ATOM 115 C C6 . DG A 1 6 ? 16.131 14.067 1.601 1.00 12.93 ? 6 DG A C6 1 ATOM 116 O O6 . DG A 1 6 ? 16.408 15.261 1.633 1.00 12.86 ? 6 DG A O6 1 ATOM 117 N N1 . DG A 1 6 ? 14.829 13.640 1.564 1.00 12.70 ? 6 DG A N1 1 ATOM 118 C C2 . DG A 1 6 ? 14.487 12.321 1.522 1.00 12.53 ? 6 DG A C2 1 ATOM 119 N N2 . DG A 1 6 ? 13.191 12.055 1.490 1.00 12.15 ? 6 DG A N2 1 ATOM 120 N N3 . DG A 1 6 ? 15.355 11.290 1.506 1.00 12.62 ? 6 DG A N3 1 ATOM 121 C C4 . DG A 1 6 ? 16.628 11.714 1.554 1.00 13.25 ? 6 DG A C4 1 HETATM 122 C C1 . DM8 B 2 . ? 15.708 18.527 5.040 1.00 14.07 ? 7 DM8 A C1 1 HETATM 123 C C2 . DM8 B 2 . ? 16.860 19.306 5.003 1.00 14.27 ? 7 DM8 A C2 1 HETATM 124 C C3 . DM8 B 2 . ? 18.199 18.682 4.919 1.00 14.24 ? 7 DM8 A C3 1 HETATM 125 C C4 . DM8 B 2 . ? 18.241 17.210 4.882 1.00 14.15 ? 7 DM8 A C4 1 HETATM 126 C C5 . DM8 B 2 . ? 17.004 15.013 4.803 1.00 13.65 ? 7 DM8 A C5 1 HETATM 127 C C6 . DM8 B 2 . ? 15.705 12.886 4.808 1.00 13.46 ? 7 DM8 A C6 1 HETATM 128 C C7 . DM8 B 2 . ? 14.408 10.722 4.819 1.00 14.27 ? 7 DM8 A C7 1 HETATM 129 C C8 . DM8 B 2 . ? 13.058 10.106 4.766 1.00 14.27 ? 7 DM8 A C8 1 HETATM 130 C C9 . DM8 B 2 . ? 11.940 10.846 5.425 1.00 14.26 ? 7 DM8 A C9 1 HETATM 131 C C10 . DM8 B 2 . ? 11.863 12.327 4.877 1.00 13.96 ? 7 DM8 A C10 1 HETATM 132 C C11 . DM8 B 2 . ? 13.245 14.332 4.909 1.00 13.54 ? 7 DM8 A C11 1 HETATM 133 C C12 . DM8 B 2 . ? 14.473 16.504 4.956 1.00 13.64 ? 7 DM8 A C12 1 HETATM 134 C C13 . DM8 B 2 . ? 10.612 10.169 5.109 1.00 14.70 ? 7 DM8 A C13 1 HETATM 135 C C14 . DM8 B 2 . ? 10.259 9.236 5.941 1.00 15.03 ? 7 DM8 A C14 1 HETATM 136 C C15 . DM8 B 2 . ? 15.784 17.137 4.951 1.00 13.81 ? 7 DM8 A C15 1 HETATM 137 C C16 . DM8 B 2 . ? 17.001 16.501 4.872 1.00 13.96 ? 7 DM8 A C16 1 HETATM 138 C C17 . DM8 B 2 . ? 15.710 14.284 4.866 1.00 13.49 ? 7 DM8 A C17 1 HETATM 139 C C18 . DM8 B 2 . ? 14.434 15.066 4.930 1.00 13.53 ? 7 DM8 A C18 1 HETATM 140 C C19 . DM8 B 2 . ? 13.174 12.923 4.851 1.00 13.53 ? 7 DM8 A C19 1 HETATM 141 C C20 . DM8 B 2 . ? 14.411 12.281 4.819 1.00 13.79 ? 7 DM8 A C20 1 HETATM 142 C C21 . DM8 B 2 . ? 20.699 17.120 4.819 1.00 14.95 ? 7 DM8 A C21 1 HETATM 143 O O4 . DM8 B 2 . ? 19.394 16.583 4.840 1.00 14.57 ? 7 DM8 A O4 1 HETATM 144 O O5 . DM8 B 2 . ? 18.041 14.315 4.729 1.00 13.84 ? 7 DM8 A O5 1 HETATM 145 O O6 . DM8 B 2 . ? 16.798 12.120 4.777 1.00 13.49 ? 7 DM8 A O6 1 HETATM 146 O O7 . DM8 B 2 . ? 15.044 10.479 6.146 1.00 15.00 ? 7 DM8 A O7 1 HETATM 147 O O9 . DM8 B 2 . ? 12.044 10.880 6.873 1.00 14.46 ? 7 DM8 A O9 1 HETATM 148 O O11 . DM8 B 2 . ? 12.098 15.106 4.966 1.00 13.36 ? 7 DM8 A O11 1 HETATM 149 O O12 . DM8 B 2 . ? 13.473 17.239 5.009 1.00 13.71 ? 7 DM8 A O12 1 HETATM 150 O O13 . DM8 B 2 . ? 9.632 10.386 4.008 1.00 15.79 ? 7 DM8 A O13 1 HETATM 151 C "C1'" . DM8 B 2 . ? 15.934 9.380 6.294 1.00 16.08 ? 7 DM8 A "C1'" 1 HETATM 152 C "C2'" . DM8 B 2 . ? 16.716 9.561 7.637 1.00 16.18 ? 7 DM8 A "C2'" 1 HETATM 153 C "C3'" . DM8 B 2 . ? 15.829 9.335 8.822 1.00 16.07 ? 7 DM8 A "C3'" 1 HETATM 154 C "C4'" . DM8 B 2 . ? 15.047 7.971 8.759 1.00 16.02 ? 7 DM8 A "C4'" 1 HETATM 155 C "C5'" . DM8 B 2 . ? 14.146 8.025 7.463 1.00 16.06 ? 7 DM8 A "C5'" 1 HETATM 156 C "C6'" . DM8 B 2 . ? 13.377 6.700 7.284 1.00 16.22 ? 7 DM8 A "C6'" 1 HETATM 157 O "O5'" . DM8 B 2 . ? 15.078 8.152 6.294 1.00 15.88 ? 7 DM8 A "O5'" 1 HETATM 158 O "O4'" . DM8 B 2 . ? 14.157 7.886 9.922 1.00 16.02 ? 7 DM8 A "O4'" 1 HETATM 159 N "N3'" . DM8 B 2 . ? 16.623 9.341 10.186 1.00 15.52 ? 7 DM8 A "N3'" 1 HETATM 160 BR BR . DM8 B 2 . ? 18.241 8.561 7.626 1.00 18.57 ? 7 DM8 A BR 1 HETATM 161 O O . HOH C 3 . ? 17.626 6.807 11.097 1.00 22.35 ? 8 HOH A O 1 HETATM 162 O O . HOH C 3 . ? 20.029 9.287 12.129 1.00 55.73 ? 9 HOH A O 1 HETATM 163 O O . HOH C 3 . ? 20.490 18.939 11.113 1.00 29.16 ? 10 HOH A O 1 HETATM 164 O O . HOH C 3 . ? 15.021 4.822 10.360 1.00 33.86 ? 11 HOH A O 1 HETATM 165 O O . HOH C 3 . ? 18.978 11.135 10.291 1.00 19.20 ? 12 HOH A O 1 HETATM 166 O O . HOH C 3 . ? 10.128 24.760 22.349 1.00 33.65 ? 13 HOH A O 1 HETATM 167 O O . HOH C 3 . ? 18.521 20.015 8.516 1.00 32.82 ? 14 HOH A O 1 HETATM 168 O O . HOH C 3 . ? 22.509 16.222 7.663 1.00 33.78 ? 15 HOH A O 1 HETATM 169 O O . HOH C 3 . ? 8.724 18.604 19.841 1.00 41.10 ? 16 HOH A O 1 HETATM 170 O O . HOH C 3 . ? 7.179 20.294 19.642 1.00 47.79 ? 17 HOH A O 1 HETATM 171 O O . HOH C 3 . ? 14.352 8.567 1.517 1.00 29.52 ? 18 HOH A O 1 HETATM 172 O O . HOH C 3 . ? 9.332 12.021 1.922 1.00 22.76 ? 19 HOH A O 1 HETATM 173 O O . HOH C 3 . ? 20.481 14.934 2.333 1.00 24.49 ? 20 HOH A O 1 HETATM 174 O O . HOH C 3 . ? 8.221 13.330 25.345 1.00 40.79 ? 21 HOH A O 1 HETATM 175 O O . HOH C 3 . ? 21.038 23.641 15.208 1.00 46.91 ? 22 HOH A O 1 HETATM 176 O O . HOH C 3 . ? 6.112 12.733 0.911 1.00 38.61 ? 23 HOH A O 1 HETATM 177 O O . HOH C 3 . ? 18.733 16.676 1.369 1.00 36.56 ? 24 HOH A O 1 HETATM 178 O O . HOH C 3 . ? 12.101 9.700 0.922 1.00 42.39 ? 25 HOH A O 1 HETATM 179 O O . HOH C 3 . ? 13.158 19.361 14.685 1.00 37.09 ? 26 HOH A O 1 HETATM 180 O O . HOH C 3 . ? 10.804 21.303 12.345 1.00 48.09 ? 27 HOH A O 1 HETATM 181 O O . HOH C 3 . ? 14.773 19.608 11.460 1.00 29.27 ? 28 HOH A O 1 HETATM 182 O O . HOH C 3 . ? 17.657 23.071 12.630 1.00 52.69 ? 29 HOH A O 1 HETATM 183 O O . HOH C 3 . ? 22.049 18.176 9.275 1.00 45.55 ? 30 HOH A O 1 HETATM 184 O O . HOH C 3 . ? 8.837 16.296 18.150 1.00 46.43 ? 31 HOH A O 1 HETATM 185 O O . HOH C 3 . ? 11.407 21.999 19.862 1.00 34.41 ? 32 HOH A O 1 HETATM 186 O O . HOH C 3 . ? 15.631 2.621 6.683 1.00 52.85 ? 33 HOH A O 1 HETATM 187 O O . HOH C 3 . ? 9.442 22.607 20.328 1.00 45.97 ? 34 HOH A O 1 HETATM 188 O O . HOH C 3 . ? 22.433 19.755 6.641 1.00 40.41 ? 35 HOH A O 1 HETATM 189 O O . HOH C 3 . ? 6.755 15.658 20.573 1.00 55.75 ? 36 HOH A O 1 HETATM 190 O O . HOH C 3 . ? 22.168 7.619 8.956 1.00 46.69 ? 37 HOH A O 1 HETATM 191 O O . HOH C 3 . ? 9.686 6.166 3.655 1.00 52.17 ? 38 HOH A O 1 HETATM 192 O O . HOH C 3 . ? 14.815 6.090 3.260 1.00 35.22 ? 39 HOH A O 1 HETATM 193 O O . HOH C 3 . ? 26.453 16.543 13.097 1.00 42.44 ? 40 HOH A O 1 HETATM 194 O O . HOH C 3 . ? 4.175 10.911 -0.716 1.00 54.04 ? 41 HOH A O 1 HETATM 195 O O . HOH C 3 . ? 15.671 6.112 0.695 1.00 41.42 ? 42 HOH A O 1 HETATM 196 O O . HOH C 3 . ? 11.565 18.833 11.735 1.00 56.96 ? 43 HOH A O 1 HETATM 197 O O . HOH C 3 . ? 20.018 5.635 10.949 1.00 44.57 ? 44 HOH A O 1 HETATM 198 O O . HOH C 3 . ? 2.068 11.762 10.402 1.00 54.82 ? 45 HOH A O 1 HETATM 199 O O . HOH C 3 . ? 16.041 21.233 8.853 1.00 50.74 ? 46 HOH A O 1 HETATM 200 O O . HOH C 3 . ? 14.378 25.914 19.340 1.00 46.60 ? 47 HOH A O 1 HETATM 201 O O . HOH C 3 . ? 23.518 15.679 4.171 1.00 47.52 ? 48 HOH A O 1 HETATM 202 O O . HOH C 3 . ? 24.543 9.048 9.594 1.00 45.55 ? 49 HOH A O 1 HETATM 203 O O . HOH C 3 . ? 7.807 8.813 1.501 1.00 51.17 ? 50 HOH A O 1 #