HEADER AMYLOID 07-DEC-04 2BFI TITLE MOLECULAR BASIS FOR AMYLOID FIBRIL FORMATION AND STABILITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNTHETIC PEPTIDE; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS AMYLOID, X-RAY DIFFRACTION, FIBER DIFFRACTION, ELECTRON KEYWDS 2 DIFFRACTION, PI-PI BONDING, BETA-SHEET INTERACTIONS EXPDTA X-RAY DIFFRACTION AUTHOR O.SUMNER MAKIN,E.ATKINS,P.SIKORSKI,J.JOHANSSON,L.C.SERPELL REVDAT 5 21-DEC-16 2BFI 1 SOURCE REMARK VERSN REVDAT 4 24-FEB-09 2BFI 1 VERSN REVDAT 3 26-MAY-06 2BFI 1 REMARK REVDAT 2 01-SEP-05 2BFI 1 REMARK REVDAT 1 06-JAN-05 2BFI 0 JRNL AUTH O.SUMNER MAKIN,E.ATKINS,P.SIKORSKI,J.JOHANSSON, JRNL AUTH 2 L.C.SERPELL JRNL TITL MOLECULAR BASIS FOR AMYLOID FIBRIL FORMATION AND JRNL TITL 2 STABILITY JRNL REF PROC.NATL.ACAD.SCI.USA V. 102 315 2005 JRNL REFN ISSN 0027-8424 JRNL PMID 15630094 JRNL DOI 10.1073/PNAS.0406847102 REMARK 2 REMARK 2 RESOLUTION. 1.1 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CERIUS 2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.1 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 104 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.039 REMARK 3 BOND ANGLES (DEGREES) : 3.386 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE COORDINATES IN THIS ENTRY WERE REMARK 3 GENERATED FROM FIBER DIFFRACTION DATA. REMARK 4 REMARK 4 2BFI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-DEC-04. REMARK 100 THE PDBE ID CODE IS EBI-21894. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 293.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 0 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.000 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA):NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 4.76000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.05000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 10.65000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 24.05000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 4.76000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 10.65000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK 300 DETAILS:IN ORDER TO GENERATE THE SYMMETRY-RELATED REMARK 300 OBJECTS DESCRIBEDIN THE ACCOMPANYING PUBLICATION, THE REMARK 300 COORDINATES SHOULD BETRANSLATED BY VECTOR (0.45 REMARK 300 , -02.14, 1.47) TO GENERATE THECORRECT ORIGIN REMARK 300 AND SYMMETRY OPERATIONS APPLIED TO THE REMARK 300 NEWCOORDINATES. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 REMARK 500 N LYS A 1 CE LYS A 9 2564 2.07 REMARK 500 N LYS A 1 NZ LYS A 9 2564 2.06 REMARK 500 N LYS A 1 HE3 LYS A 9 2564 1.37 REMARK 500 CA LYS A 1 CE LYS A 9 2564 2.18 REMARK 500 CA LYS A 1 NZ LYS A 9 2564 2.05 REMARK 500 C LYS A 1 CD LYS A 9 2564 2.20 REMARK 500 C LYS A 1 CE LYS A 9 2564 1.97 REMARK 500 C LYS A 1 NZ LYS A 9 2564 1.28 REMARK 500 O LYS A 1 CD LYS A 9 2564 2.17 REMARK 500 O LYS A 1 CE LYS A 9 2564 1.57 REMARK 500 O LYS A 1 NZ LYS A 9 2564 0.85 REMARK 500 CE LYS A 1 C ALA A 7 2564 2.05 REMARK 500 CE LYS A 1 O ALA A 7 2564 1.19 REMARK 500 HB2 LYS A 1 CG LYS A 9 2564 1.52 REMARK 500 HD2 LYS A 1 HA LYS A 8 2564 1.35 REMARK 500 HE2 LYS A 1 O ALA A 7 2564 1.47 REMARK 500 CD2 PHE A 2 CB GLU A 12 4456 1.97 REMARK 500 CE2 PHE A 2 CB GLU A 12 4456 2.09 REMARK 500 HD2 PHE A 2 CB GLU A 12 4456 1.55 REMARK 500 HD2 PHE A 2 HB2 GLU A 12 4456 1.37 REMARK 500 HD2 PHE A 2 HB3 GLU A 12 4456 1.35 REMARK 500 HE2 PHE A 2 HB3 GLU A 12 4456 1.59 REMARK 500 C PHE A 3 CE1 PHE A 11 2564 1.80 REMARK 500 C PHE A 3 CZ PHE A 11 2564 2.01 REMARK 500 O PHE A 3 CE1 PHE A 11 2564 1.61 REMARK 500 O PHE A 3 CZ PHE A 11 2564 1.34 REMARK 500 CB PHE A 3 CE2 PHE A 11 2564 2.13 REMARK 500 CB PHE A 3 CD2 PHE A 11 2564 1.89 REMARK 500 CD1 PHE A 3 HD2 PHE A 11 2564 1.57 REMARK 500 CE1 PHE A 3 CA LYS A 9 2564 1.72 REMARK 500 CE1 PHE A 3 C LYS A 9 2564 1.18 REMARK 500 CE1 PHE A 3 N PHE A 10 2564 1.27 REMARK 500 CE1 PHE A 3 H PHE A 10 2564 1.55 REMARK 500 CE2 PHE A 3 CB LYS A 9 2564 2.08 REMARK 500 CZ PHE A 3 CB LYS A 9 2564 1.99 REMARK 500 CZ PHE A 3 CA LYS A 9 2564 1.34 REMARK 500 CZ PHE A 3 C LYS A 9 2564 1.06 REMARK 500 CZ PHE A 3 O LYS A 9 2564 1.47 REMARK 500 CZ PHE A 3 N PHE A 10 2564 2.20 REMARK 500 HE1 PHE A 3 C LYS A 9 2564 1.43 REMARK 500 HZ PHE A 3 CA LYS A 9 2564 1.43 REMARK 500 N GLU A 4 CE1 PHE A 11 2564 2.12 REMARK 500 O GLU A 4 CD2 PHE A 10 4556 2.01 REMARK 500 O GLU A 4 CE2 PHE A 10 4556 1.34 REMARK 500 O GLU A 4 CZ PHE A 10 4556 1.53 REMARK 500 HB2 ALA A 5 HZ PHE A 10 4556 1.55 REMARK 500 O ALA A 6 CD LYS A 8 4556 1.84 REMARK 500 O ALA A 6 CE LYS A 8 4556 1.71 REMARK 500 C ALA A 7 CE LYS A 1 2565 2.05 REMARK 500 O ALA A 7 CE LYS A 1 2565 1.19 REMARK 500 REMARK 500 THIS ENTRY HAS 96 SYMMETRY CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 4 CD GLU A 4 OE1 -0.068 REMARK 500 GLU A 4 CD GLU A 4 OE2 0.116 REMARK 500 GLU A 12 CD GLU A 12 OE2 0.141 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 4 N - CA - CB ANGL. DEV. = -15.9 DEGREES REMARK 500 ALA A 7 N - CA - CB ANGL. DEV. = 9.9 DEGREES REMARK 500 PHE A 10 N - CA - CB ANGL. DEV. = -12.5 DEGREES REMARK 500 PHE A 11 CB - CG - CD1 ANGL. DEV. = -4.8 DEGREES REMARK 500 PHE A 11 CB - CG - CD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE A 2 0.10 SIDE CHAIN REMARK 500 PHE A 3 0.14 SIDE CHAIN REMARK 500 PHE A 11 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LYS A 9 24.5 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL DBREF 2BFI A 1 12 PDB 2BFI 2BFI 1 12 SEQRES 1 A 12 LYS PHE PHE GLU ALA ALA ALA LYS LYS PHE PHE GLU CRYST1 9.520 21.300 48.100 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.105042 0.000000 0.000000 0.00000 SCALE2 0.000000 0.046948 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020790 0.00000 ATOM 1 N LYS A 1 1.413 9.020 2.701 1.00 0.00 N ATOM 2 CA LYS A 1 2.333 8.704 3.823 1.00 0.00 C ATOM 3 C LYS A 1 1.496 7.799 4.924 1.00 0.00 C ATOM 4 O LYS A 1 0.258 7.843 4.981 1.00 0.00 O ATOM 5 CB LYS A 1 3.039 10.057 4.247 1.00 0.00 C ATOM 6 CG LYS A 1 3.414 11.194 3.145 1.00 0.00 C ATOM 7 CD LYS A 1 4.197 12.533 3.631 1.00 0.00 C ATOM 8 CE LYS A 1 4.954 13.462 2.601 1.00 0.00 C ATOM 9 NZ LYS A 1 5.753 14.527 3.289 1.00 0.00 N ATOM 10 H1 LYS A 1 2.016 9.285 1.911 1.00 0.00 H ATOM 11 H2 LYS A 1 0.761 8.247 2.376 1.00 0.00 H ATOM 12 HA LYS A 1 3.135 8.111 3.363 1.00 0.00 H ATOM 13 HB2 LYS A 1 2.519 10.528 5.072 1.00 0.00 H ATOM 14 HB3 LYS A 1 4.026 9.807 4.713 1.00 0.00 H ATOM 15 HG2 LYS A 1 4.033 10.706 2.393 1.00 0.00 H ATOM 16 HG3 LYS A 1 2.517 11.494 2.565 1.00 0.00 H ATOM 17 HD2 LYS A 1 3.592 13.175 4.291 1.00 0.00 H ATOM 18 HD3 LYS A 1 4.962 12.186 4.347 1.00 0.00 H ATOM 19 HE2 LYS A 1 5.653 12.952 1.900 1.00 0.00 H ATOM 20 HE3 LYS A 1 4.223 13.927 1.909 1.00 0.00 H ATOM 21 N PHE A 2 2.223 7.326 5.914 1.00 0.00 N ATOM 22 CA PHE A 2 1.621 6.821 7.144 1.00 0.00 C ATOM 23 C PHE A 2 2.384 7.300 8.356 1.00 0.00 C ATOM 24 O PHE A 2 3.645 7.270 8.408 1.00 0.00 O ATOM 25 CB PHE A 2 1.625 5.237 7.205 1.00 0.00 C ATOM 26 CG PHE A 2 1.123 4.353 6.011 1.00 0.00 C ATOM 27 CD1 PHE A 2 1.674 3.076 5.789 1.00 0.00 C ATOM 28 CD2 PHE A 2 -0.052 4.731 5.349 1.00 0.00 C ATOM 29 CE1 PHE A 2 0.955 2.171 5.003 1.00 0.00 C ATOM 30 CE2 PHE A 2 -0.736 3.843 4.543 1.00 0.00 C ATOM 31 CZ PHE A 2 -0.244 2.562 4.395 1.00 0.00 C ATOM 32 H PHE A 2 3.249 7.311 5.818 1.00 0.00 H ATOM 33 HA PHE A 2 0.585 7.203 7.219 1.00 0.00 H ATOM 34 HB2 PHE A 2 2.631 4.906 7.515 1.00 0.00 H ATOM 35 HB3 PHE A 2 1.015 5.036 8.090 1.00 0.00 H ATOM 36 HD1 PHE A 2 2.620 2.742 6.275 1.00 0.00 H ATOM 37 HD2 PHE A 2 -0.557 5.666 5.521 1.00 0.00 H ATOM 38 HE1 PHE A 2 1.289 1.146 4.958 1.00 0.00 H ATOM 39 HE2 PHE A 2 -1.654 4.222 4.072 1.00 0.00 H ATOM 40 HZ PHE A 2 -0.861 1.889 3.829 1.00 0.00 H ATOM 41 N PHE A 3 1.655 7.749 9.356 1.00 0.00 N ATOM 42 CA PHE A 3 2.257 8.243 10.591 1.00 0.00 C ATOM 43 C PHE A 3 1.506 7.738 11.799 1.00 0.00 C ATOM 44 O PHE A 3 0.245 7.751 11.857 1.00 0.00 O ATOM 45 CB PHE A 3 2.485 9.771 10.738 1.00 0.00 C ATOM 46 CG PHE A 3 2.621 10.658 9.519 1.00 0.00 C ATOM 47 CD1 PHE A 3 1.966 11.897 9.561 1.00 0.00 C ATOM 48 CD2 PHE A 3 3.728 10.527 8.647 1.00 0.00 C ATOM 49 CE1 PHE A 3 2.476 12.977 8.874 1.00 0.00 C ATOM 50 CE2 PHE A 3 4.069 11.561 7.801 1.00 0.00 C ATOM 51 CZ PHE A 3 3.503 12.801 7.981 1.00 0.00 C ATOM 52 H PHE A 3 0.629 7.753 9.265 1.00 0.00 H ATOM 53 HA PHE A 3 3.298 7.874 10.655 1.00 0.00 H ATOM 54 HB2 PHE A 3 1.707 10.181 11.432 1.00 0.00 H ATOM 55 HB3 PHE A 3 3.456 9.853 11.241 1.00 0.00 H ATOM 56 HD1 PHE A 3 1.110 12.090 10.133 1.00 0.00 H ATOM 57 HD2 PHE A 3 4.392 9.652 8.594 1.00 0.00 H ATOM 58 HE1 PHE A 3 1.982 13.914 9.059 1.00 0.00 H ATOM 59 HE2 PHE A 3 4.855 11.417 7.099 1.00 0.00 H ATOM 60 HZ PHE A 3 3.840 13.653 7.428 1.00 0.00 H ATOM 61 N GLU A 4 2.245 7.283 12.789 1.00 0.00 N ATOM 62 CA GLU A 4 1.654 6.763 14.019 1.00 0.00 C ATOM 63 C GLU A 4 2.405 7.260 15.232 1.00 0.00 C ATOM 64 O GLU A 4 3.629 7.262 15.282 1.00 0.00 O ATOM 65 CB GLU A 4 1.742 5.290 13.588 1.00 0.00 C ATOM 66 CG GLU A 4 2.052 4.301 14.656 1.00 0.00 C ATOM 67 CD GLU A 4 2.024 2.889 14.191 1.00 0.00 C ATOM 68 OE1 GLU A 4 2.477 2.060 14.905 1.00 0.00 O ATOM 69 OE2 GLU A 4 1.631 2.684 12.897 1.00 0.00 O ATOM 70 H GLU A 4 3.270 7.294 12.693 1.00 0.00 H ATOM 71 HA GLU A 4 0.613 7.128 14.095 1.00 0.00 H ATOM 72 HB2 GLU A 4 0.770 5.069 13.066 1.00 0.00 H ATOM 73 HB3 GLU A 4 2.534 5.050 12.813 1.00 0.00 H ATOM 74 HG2 GLU A 4 3.060 4.530 15.029 1.00 0.00 H ATOM 75 HG3 GLU A 4 1.440 4.429 15.555 1.00 0.00 H ATOM 76 HE2 GLU A 4 2.426 2.349 12.496 1.00 0.00 H ATOM 77 N ALA A 5 1.666 7.692 16.231 1.00 0.00 N ATOM 78 CA ALA A 5 2.255 8.201 17.466 1.00 0.00 C ATOM 79 C ALA A 5 1.516 7.677 18.675 1.00 0.00 C ATOM 80 O ALA A 5 0.281 7.649 18.726 1.00 0.00 O ATOM 81 CB ALA A 5 2.192 9.789 17.502 1.00 0.00 C ATOM 82 H ALA A 5 0.640 7.669 16.140 1.00 0.00 H ATOM 83 HA ALA A 5 3.297 7.838 17.536 1.00 0.00 H ATOM 84 HB1 ALA A 5 2.562 10.282 18.456 1.00 0.00 H ATOM 85 HB2 ALA A 5 2.755 10.315 16.684 1.00 0.00 H ATOM 86 HB3 ALA A 5 1.122 10.125 17.459 1.00 0.00 H ATOM 87 N ALA A 6 2.266 7.240 19.664 1.00 0.00 N ATOM 88 CA ALA A 6 1.688 6.706 20.894 1.00 0.00 C ATOM 89 C ALA A 6 2.426 7.221 22.107 1.00 0.00 C ATOM 90 O ALA A 6 3.661 7.264 22.153 1.00 0.00 O ATOM 91 CB ALA A 6 1.737 5.132 20.907 1.00 0.00 C ATOM 92 H ALA A 6 3.290 7.277 19.569 1.00 0.00 H ATOM 93 HA ALA A 6 0.642 7.055 20.974 1.00 0.00 H ATOM 94 HB1 ALA A 6 1.067 4.685 20.128 1.00 0.00 H ATOM 95 HB2 ALA A 6 1.407 4.625 21.849 1.00 0.00 H ATOM 96 HB3 ALA A 6 2.763 4.772 20.762 1.00 0.00 H ATOM 97 N ALA A 7 1.676 7.634 23.106 1.00 0.00 N ATOM 98 CA ALA A 7 2.252 8.157 24.342 1.00 0.00 C ATOM 99 C ALA A 7 1.526 7.615 25.550 1.00 0.00 C ATOM 100 O ALA A 7 0.292 7.556 25.601 1.00 0.00 O ATOM 101 CB ALA A 7 2.506 9.669 24.493 1.00 0.00 C ATOM 102 H ALA A 7 0.651 7.586 23.015 1.00 0.00 H ATOM 103 HA ALA A 7 3.303 7.820 24.412 1.00 0.00 H ATOM 104 HB1 ALA A 7 3.360 9.927 25.101 1.00 0.00 H ATOM 105 HB2 ALA A 7 1.560 10.109 24.908 1.00 0.00 H ATOM 106 HB3 ALA A 7 2.744 10.108 23.510 1.00 0.00 H ATOM 107 N LYS A 8 2.286 7.197 26.540 1.00 0.00 N ATOM 108 CA LYS A 8 1.722 6.649 27.770 1.00 0.00 C ATOM 109 C LYS A 8 2.447 7.182 28.982 1.00 0.00 C ATOM 110 O LYS A 8 3.684 7.246 29.033 1.00 0.00 O ATOM 111 CB LYS A 8 1.501 5.098 27.750 1.00 0.00 C ATOM 112 CG LYS A 8 0.819 4.547 26.494 1.00 0.00 C ATOM 113 CD LYS A 8 0.652 3.046 26.406 1.00 0.00 C ATOM 114 CE LYS A 8 0.145 2.701 24.999 1.00 0.00 C ATOM 115 NZ LYS A 8 0.021 1.259 24.748 1.00 0.00 N ATOM 116 H LYS A 8 3.310 7.259 26.444 1.00 0.00 H ATOM 117 HA LYS A 8 0.667 6.972 27.844 1.00 0.00 H ATOM 118 HB2 LYS A 8 2.450 4.565 27.813 1.00 0.00 H ATOM 119 HB3 LYS A 8 0.936 4.874 28.688 1.00 0.00 H ATOM 120 HG2 LYS A 8 -0.125 5.105 26.330 1.00 0.00 H ATOM 121 HG3 LYS A 8 1.467 4.874 25.657 1.00 0.00 H ATOM 122 HD2 LYS A 8 1.625 2.548 26.539 1.00 0.00 H ATOM 123 HD3 LYS A 8 -0.020 2.666 27.190 1.00 0.00 H ATOM 124 HE2 LYS A 8 -0.818 3.200 24.789 1.00 0.00 H ATOM 125 HE3 LYS A 8 0.834 3.061 24.224 1.00 0.00 H ATOM 126 N LYS A 9 1.686 7.576 29.982 1.00 0.00 N ATOM 127 CA LYS A 9 2.249 8.114 31.217 1.00 0.00 C ATOM 128 C LYS A 9 1.537 7.554 32.425 1.00 0.00 C ATOM 129 O LYS A 9 0.301 7.474 32.480 1.00 0.00 O ATOM 130 CB LYS A 9 2.659 9.629 31.192 1.00 0.00 C ATOM 131 CG LYS A 9 3.369 10.150 29.926 1.00 0.00 C ATOM 132 CD LYS A 9 3.815 11.585 29.899 1.00 0.00 C ATOM 133 CE LYS A 9 4.422 11.981 28.492 1.00 0.00 C ATOM 134 NZ LYS A 9 4.286 13.387 28.208 1.00 0.00 N ATOM 135 H LYS A 9 0.663 7.503 29.890 1.00 0.00 H ATOM 136 HA LYS A 9 3.309 7.803 31.282 1.00 0.00 H ATOM 137 HB2 LYS A 9 1.721 10.136 31.347 1.00 0.00 H ATOM 138 HB3 LYS A 9 3.305 9.888 32.044 1.00 0.00 H ATOM 139 HG2 LYS A 9 4.199 9.511 29.564 1.00 0.00 H ATOM 140 HG3 LYS A 9 2.608 9.966 29.165 1.00 0.00 H ATOM 141 HD2 LYS A 9 3.023 12.281 30.226 1.00 0.00 H ATOM 142 HD3 LYS A 9 4.607 11.755 30.644 1.00 0.00 H ATOM 143 HE2 LYS A 9 5.467 11.689 28.493 1.00 0.00 H ATOM 144 HE3 LYS A 9 3.970 11.432 27.627 1.00 0.00 H ATOM 145 N PHE A 10 2.307 7.155 33.415 1.00 0.00 N ATOM 146 CA PHE A 10 1.756 6.592 34.645 1.00 0.00 C ATOM 147 C PHE A 10 2.467 7.144 35.857 1.00 0.00 C ATOM 148 O PHE A 10 3.725 7.239 35.910 1.00 0.00 O ATOM 149 CB PHE A 10 2.181 5.047 34.401 1.00 0.00 C ATOM 150 CG PHE A 10 1.238 4.002 33.710 1.00 0.00 C ATOM 151 CD1 PHE A 10 1.034 2.749 34.308 1.00 0.00 C ATOM 152 CD2 PHE A 10 0.662 4.228 32.473 1.00 0.00 C ATOM 153 CE1 PHE A 10 0.235 1.791 33.720 1.00 0.00 C ATOM 154 CE2 PHE A 10 -0.174 3.273 31.888 1.00 0.00 C ATOM 155 CZ PHE A 10 -0.399 2.072 32.527 1.00 0.00 C ATOM 156 H PHE A 10 3.329 7.242 33.319 1.00 0.00 H ATOM 157 HA PHE A 10 0.688 6.869 34.718 1.00 0.00 H ATOM 158 HB2 PHE A 10 3.256 4.965 34.038 1.00 0.00 H ATOM 159 HB3 PHE A 10 2.295 4.707 35.435 1.00 0.00 H ATOM 160 HD1 PHE A 10 1.550 2.616 35.227 1.00 0.00 H ATOM 161 HD2 PHE A 10 1.006 5.064 31.870 1.00 0.00 H ATOM 162 HE1 PHE A 10 0.075 0.846 34.274 1.00 0.00 H ATOM 163 HE2 PHE A 10 -0.642 3.436 30.937 1.00 0.00 H ATOM 164 HZ PHE A 10 -0.976 1.321 32.025 1.00 0.00 H ATOM 165 N PHE A 11 1.697 7.518 36.857 1.00 0.00 N ATOM 166 CA PHE A 11 2.246 8.070 38.092 1.00 0.00 C ATOM 167 C PHE A 11 1.548 7.492 39.300 1.00 0.00 C ATOM 168 O PHE A 11 0.291 7.379 39.356 1.00 0.00 O ATOM 169 CB PHE A 11 1.916 9.601 37.989 1.00 0.00 C ATOM 170 CG PHE A 11 2.728 10.590 37.052 1.00 0.00 C ATOM 171 CD1 PHE A 11 3.022 11.835 37.591 1.00 0.00 C ATOM 172 CD2 PHE A 11 3.333 10.310 35.769 1.00 0.00 C ATOM 173 CE1 PHE A 11 4.071 12.603 37.128 1.00 0.00 C ATOM 174 CE2 PHE A 11 4.323 11.139 35.219 1.00 0.00 C ATOM 175 CZ PHE A 11 4.759 12.237 35.956 1.00 0.00 C ATOM 176 H PHE A 11 0.676 7.420 36.764 1.00 0.00 H ATOM 177 HA PHE A 11 3.318 7.805 38.157 1.00 0.00 H ATOM 178 HB2 PHE A 11 0.830 9.735 37.826 1.00 0.00 H ATOM 179 HB3 PHE A 11 1.958 9.972 39.043 1.00 0.00 H ATOM 180 HD1 PHE A 11 2.507 12.097 38.492 1.00 0.00 H ATOM 181 HD2 PHE A 11 2.932 9.480 35.178 1.00 0.00 H ATOM 182 HE1 PHE A 11 4.370 13.465 37.687 1.00 0.00 H ATOM 183 HE2 PHE A 11 4.834 10.918 34.277 1.00 0.00 H ATOM 184 HZ PHE A 11 5.529 12.858 35.624 1.00 0.00 H ATOM 185 N GLU A 12 2.327 7.112 40.290 1.00 0.00 N ATOM 186 CA GLU A 12 1.791 6.536 41.520 1.00 0.00 C ATOM 187 C GLU A 12 1.365 7.682 42.478 1.00 0.00 C ATOM 188 O GLU A 12 0.206 7.768 42.919 1.00 0.00 O ATOM 189 CB GLU A 12 2.812 5.626 42.326 1.00 0.00 C ATOM 190 CG GLU A 12 2.379 4.900 43.681 1.00 0.00 C ATOM 191 CD GLU A 12 3.466 4.306 44.624 1.00 0.00 C ATOM 192 OE1 GLU A 12 4.615 4.708 44.704 1.00 0.00 O ATOM 193 OE2 GLU A 12 2.934 3.448 45.584 1.00 0.00 O ATOM 194 H GLU A 12 3.347 7.225 40.195 1.00 0.00 H ATOM 195 HA GLU A 12 0.921 5.940 41.310 1.00 0.00 H ATOM 196 HB2 GLU A 12 3.179 4.844 41.680 1.00 0.00 H ATOM 197 HB3 GLU A 12 3.692 6.236 42.563 1.00 0.00 H ATOM 198 HG2 GLU A 12 1.736 5.539 44.340 1.00 0.00 H ATOM 199 HG3 GLU A 12 1.782 3.999 43.479 1.00 0.00 H ATOM 200 HE2 GLU A 12 3.665 3.241 46.213 1.00 0.00 H TER 201 GLU A 12 MASTER 359 0 0 0 0 0 0 6 200 1 0 1 END