data_2PKV # _entry.id 2PKV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2PKV pdb_00002pkv 10.2210/pdb2pkv/pdb NDB AD0067 ? ? RCSB RCSB042488 ? ? WWPDB D_1000042488 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 115D 'D-(GG[Br]UA[Br]UACC), with the two Br replacing THY methyl groups' unspecified PDB 1VJ4 'D-(GGTATACC) initial structure' unspecified PDB 2PL4 'D-(GGTATACC) under 0.55 GPA hydrostatic pressure' unspecified PDB 2PL8 'D-(GGTATACC) under 1.04 GPA hydrostatic pressure' unspecified PDB 2PLB 'D-(GGTATACC) at 1.39 GPA hydrostatic pressure' unspecified PDB 2PLO 'D-(GTATACC) LOW TEMPERATURE (100K)' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2PKV _pdbx_database_status.recvd_initial_deposition_date 2007-04-18 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Girard, E.' 1 'Prange, T.' 2 'Kahn, R.' 3 'Fourme, R.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Adaptation of the base-paired double-helix molecular architecture to extreme pressure.' 'Nucleic Acids Res.' 35 4800 4808 2007 NARHAD UK 0305-1048 0389 ? 17617642 10.1093/nar/gkm511 1 'Coexistence of A-and B-Form DNA in a Single Crystal Lattice' Nature 337 190 193 1989 NATUAS UK 0028-0836 0006 ? 2911354 10.1038/337190a0 2 'High-pressure protein crystallography (HPPX): Instrumentation, methodology and results on lysozyme crystals' 'J.Synchrotron Radia.' 8 1149 1156 2001 JSYRES DK 0909-0495 1210 ? 11524565 10.1107/S0909049501011037 3 ;High pressure macromolecular crystallography: The 140 MPa crystal structure at 2.3 A resolution of urate oxidase, A 135 KD tetrameric assembly ; 'BIOCHEM.BIOPHYS.ACTA PROTEINS & PROTEOMICS' 1764 391 397 2006 ? NE 1570-9639 ? ? 16478683 10.1016/j.bbapap.2006.01.006 4 'Crystal structure of hen egg-white lysozyme at a hydrostatic pressure of 1000 atmospheres.' J.Mol.Biol. 193 157 170 1987 JMOBAK UK 0022-2836 0070 ? 3586017 '10.1016/0022-2836(87)90634-6' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Girard, E.' 1 ? primary 'Prange, T.' 2 ? primary 'Dhaussy, A.C.' 3 ? primary 'Migianu-Griffoni, E.' 4 ? primary 'Lecouvey, M.' 5 ? primary 'Chervin, J.C.' 6 ? primary 'Mezouar, M.' 7 ? primary 'Kahn, R.' 8 ? primary 'Fourme, R.' 9 ? 1 'Doucet, J.' 10 ? 1 'Benoit, J.-P.' 11 ? 1 'Cruse, W.B.T.' 12 ? 1 'Prange, T.' 13 ? 1 'Kennard, O.' 14 ? 2 'Fourme, R.' 15 ? 2 'Kahn, R.' 16 ? 2 'Mezouar, M.' 17 ? 2 'Girard, E.' 18 ? 2 'Horentrup, C.' 19 ? 2 'Prange, T.' 20 ? 2 'Ascone, I.' 21 ? 3 ;Colloc'h, N. ; 22 ? 3 'Girard, E.' 23 ? 3 'Dhaussy, A.C.' 24 ? 3 'Kahn, R.' 25 ? 3 'Ascone, I.' 26 ? 3 'Mezouar, M.' 27 ? 3 'Fourme, R.' 28 ? 4 'Kundrot, C.E.' 29 ? 4 'Richards, F.M.' 30 ? # _cell.entry_id 2PKV _cell.length_a 45.030 _cell.length_b 45.030 _cell.length_c 41.750 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2PKV _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*GP*TP*AP*TP*AP*CP*C)-3'" 2426.617 2 ? ? ? ? 2 water nat water 18.015 57 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DG)(DT)(DA)(DT)(DA)(DC)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GGTATACC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DT n 1 4 DA n 1 5 DT n 1 6 DA n 1 7 DC n 1 8 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'SYNTHETIC DNA' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2PKV _struct_ref.pdbx_db_accession 2PKV _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2PKV A 1 ? 8 ? 2PKV 1 ? 8 ? 1 8 2 1 2PKV B 1 ? 8 ? 2PKV 1 ? 8 ? 1 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # _exptl.entry_id 2PKV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.42 _exptl_crystal.density_percent_sol 49.21 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_details ;10 mg of lyophilized DNA dissolved in 0.2 ml of a 15 % MPD solution with additives: 10-5 M sodium azide, 10-2 M MgCl2 and 2.10-2 spermine chloride. Reservoir : same solution but 50 % MPD, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 290K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 'sodium azide' ? ? ? 1 3 1 MgCl2 ? ? ? 1 4 1 'spermine chloride' ? ? ? 1 5 2 MPD ? ? ? 1 6 2 'sodium azide' ? ? ? 1 7 2 MgCl2 ? ? ? 1 8 2 'spermine chloride' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 295 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2006-11-10 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.3738 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID27' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID27 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.3738 # _reflns.entry_id 2PKV _reflns.observed_criterion_sigma_F 2 _reflns.observed_criterion_sigma_I 4 _reflns.d_resolution_high 1.6 _reflns.d_resolution_low 19 _reflns.number_all 6228 _reflns.number_obs 6228 _reflns.percent_possible_obs 94.5 _reflns.pdbx_Rmerge_I_obs 0.045 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 9.3 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.0 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.6 _reflns_shell.d_res_low 1.7 _reflns_shell.percent_possible_all 96.2 _reflns_shell.Rmerge_I_obs 0.330 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.3 _reflns_shell.pdbx_redundancy 4.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2PKV _refine.ls_number_reflns_obs 6228 _refine.ls_number_reflns_all 6228 _refine.pdbx_ls_sigma_I 4 _refine.pdbx_ls_sigma_F 2 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.00 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 96.8 _refine.ls_R_factor_obs 0.1510 _refine.ls_R_factor_all 0.1585 _refine.ls_R_factor_R_work 0.1486 _refine.ls_R_factor_R_free 0.1891 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 497 _refine.ls_number_parameters 1523 _refine.ls_number_restraints 1585 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details ? _refine.pdbx_starting_model '115D FROM PDB' _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_isotropic_thermal_model 'individual B factors' _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2PKV _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 0 _refine_analyze.occupancy_sum_hydrogen 184.00 _refine_analyze.occupancy_sum_non_hydrogen 379.00 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 322 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 57 _refine_hist.number_atoms_total 379 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 10.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.029 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0012 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.010 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.006 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.043 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.000 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 2PKV _pdbx_refine.R_factor_all_no_cutoff 0.1585 _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0.1486 _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff 5465 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 2PKV _struct.title 'D-(GGTATACC) ambient pressure' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2PKV _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'HIGH PRESSURE, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.details 'THE BIOLOGICAL ASSEMBLY IS A DIMER' # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 1 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 1 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 1 B DC 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 2 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 2 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 2 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 3 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 3 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 4 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 4 B DT 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 4 N1 ? ? A DT 5 B DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 4 N6 ? ? A DT 5 B DA 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 3 N3 ? ? A DA 6 B DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 3 O4 ? ? A DA 6 B DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 7 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 7 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 7 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 8 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 8 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 8 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 2PKV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 2PKV _atom_sites.fract_transf_matrix[1][1] 0.022207 _atom_sites.fract_transf_matrix[1][2] 0.012821 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025643 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023952 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? 24.269 20.949 -9.824 1.00 40.29 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? 25.343 20.088 -9.419 1.00 33.11 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? 26.477 20.192 -10.426 1.00 22.88 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? 26.758 21.590 -10.670 1.00 22.72 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? 27.789 19.574 -9.993 1.00 26.45 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? 27.896 18.197 -10.332 1.00 27.15 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? 28.798 20.413 -10.751 1.00 22.62 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? 28.158 21.790 -10.704 1.00 26.40 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? 28.589 22.537 -9.505 1.00 23.46 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? 27.795 22.966 -8.469 1.00 22.63 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? 28.464 23.598 -7.554 1.00 25.04 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? 29.781 23.587 -8.009 1.00 20.61 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? 30.943 24.129 -7.419 1.00 23.20 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? 31.069 24.743 -6.355 1.00 21.16 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? 32.067 23.899 -8.200 1.00 19.30 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? 32.054 23.232 -9.399 1.00 18.76 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? 33.253 23.132 -9.976 1.00 19.28 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? 30.961 22.725 -9.950 1.00 17.37 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? 29.871 22.930 -9.219 1.00 18.42 ? 1 DG A C4 1 ATOM 20 P P . DG A 1 2 ? 28.585 17.132 -9.348 1.00 28.42 ? 2 DG A P 1 ATOM 21 O OP1 . DG A 1 2 ? 28.444 15.786 -9.943 1.00 37.93 ? 2 DG A OP1 1 ATOM 22 O OP2 . DG A 1 2 ? 28.149 17.409 -7.969 1.00 28.83 ? 2 DG A OP2 1 ATOM 23 O "O5'" . DG A 1 2 ? 30.143 17.508 -9.442 1.00 25.82 ? 2 DG A "O5'" 1 ATOM 24 C "C5'" . DG A 1 2 ? 30.831 17.222 -10.667 1.00 23.72 ? 2 DG A "C5'" 1 ATOM 25 C "C4'" . DG A 1 2 ? 32.229 17.766 -10.583 1.00 18.64 ? 2 DG A "C4'" 1 ATOM 26 O "O4'" . DG A 1 2 ? 32.187 19.174 -10.293 1.00 18.33 ? 2 DG A "O4'" 1 ATOM 27 C "C3'" . DG A 1 2 ? 33.077 17.175 -9.471 1.00 17.05 ? 2 DG A "C3'" 1 ATOM 28 O "O3'" . DG A 1 2 ? 33.574 15.912 -9.855 1.00 20.87 ? 2 DG A "O3'" 1 ATOM 29 C "C2'" . DG A 1 2 ? 34.148 18.231 -9.302 1.00 16.09 ? 2 DG A "C2'" 1 ATOM 30 C "C1'" . DG A 1 2 ? 33.337 19.492 -9.503 1.00 20.52 ? 2 DG A "C1'" 1 ATOM 31 N N9 . DG A 1 2 ? 32.803 20.106 -8.257 1.00 17.97 ? 2 DG A N9 1 ATOM 32 C C8 . DG A 1 2 ? 31.539 20.167 -7.766 1.00 18.61 ? 2 DG A C8 1 ATOM 33 N N7 . DG A 1 2 ? 31.452 20.806 -6.611 1.00 19.23 ? 2 DG A N7 1 ATOM 34 C C5 . DG A 1 2 ? 32.760 21.185 -6.340 1.00 15.28 ? 2 DG A C5 1 ATOM 35 C C6 . DG A 1 2 ? 33.320 21.904 -5.239 1.00 16.94 ? 2 DG A C6 1 ATOM 36 O O6 . DG A 1 2 ? 32.747 22.367 -4.248 1.00 18.30 ? 2 DG A O6 1 ATOM 37 N N1 . DG A 1 2 ? 34.698 22.057 -5.388 1.00 16.28 ? 2 DG A N1 1 ATOM 38 C C2 . DG A 1 2 ? 35.461 21.596 -6.432 1.00 15.24 ? 2 DG A C2 1 ATOM 39 N N2 . DG A 1 2 ? 36.753 21.830 -6.409 1.00 16.02 ? 2 DG A N2 1 ATOM 40 N N3 . DG A 1 2 ? 34.951 20.927 -7.457 1.00 14.98 ? 2 DG A N3 1 ATOM 41 C C4 . DG A 1 2 ? 33.620 20.767 -7.337 1.00 17.30 ? 2 DG A C4 1 ATOM 42 P P . DT A 1 3 ? 33.977 14.786 -8.805 1.00 22.36 ? 3 DT A P 1 ATOM 43 O OP1 . DT A 1 3 ? 34.437 13.583 -9.532 1.00 32.66 ? 3 DT A OP1 1 ATOM 44 O OP2 . DT A 1 3 ? 32.929 14.732 -7.765 1.00 21.51 ? 3 DT A OP2 1 ATOM 45 O "O5'" . DT A 1 3 ? 35.293 15.435 -8.151 1.00 19.03 ? 3 DT A "O5'" 1 ATOM 46 C "C5'" . DT A 1 3 ? 36.534 15.477 -8.855 1.00 19.99 ? 3 DT A "C5'" 1 ATOM 47 C "C4'" . DT A 1 3 ? 37.584 16.153 -7.994 1.00 16.26 ? 3 DT A "C4'" 1 ATOM 48 O "O4'" . DT A 1 3 ? 37.168 17.513 -7.688 1.00 17.73 ? 3 DT A "O4'" 1 ATOM 49 C "C3'" . DT A 1 3 ? 37.830 15.537 -6.643 1.00 19.27 ? 3 DT A "C3'" 1 ATOM 50 O "O3'" . DT A 1 3 ? 38.589 14.342 -6.713 1.00 22.09 ? 3 DT A "O3'" 1 ATOM 51 C "C2'" . DT A 1 3 ? 38.588 16.660 -5.933 1.00 20.74 ? 3 DT A "C2'" 1 ATOM 52 C "C1'" . DT A 1 3 ? 37.790 17.837 -6.424 1.00 18.80 ? 3 DT A "C1'" 1 ATOM 53 N N1 . DT A 1 3 ? 36.686 18.208 -5.525 1.00 16.46 ? 3 DT A N1 1 ATOM 54 C C2 . DT A 1 3 ? 37.013 19.029 -4.444 1.00 14.92 ? 3 DT A C2 1 ATOM 55 O O2 . DT A 1 3 ? 38.157 19.400 -4.294 1.00 18.41 ? 3 DT A O2 1 ATOM 56 N N3 . DT A 1 3 ? 35.928 19.317 -3.677 1.00 15.09 ? 3 DT A N3 1 ATOM 57 C C4 . DT A 1 3 ? 34.627 18.922 -3.809 1.00 15.37 ? 3 DT A C4 1 ATOM 58 O O4 . DT A 1 3 ? 33.772 19.274 -3.014 1.00 19.34 ? 3 DT A O4 1 ATOM 59 C C5 . DT A 1 3 ? 34.362 18.062 -4.953 1.00 15.91 ? 3 DT A C5 1 ATOM 60 C C7 . DT A 1 3 ? 32.975 17.562 -5.209 1.00 19.10 ? 3 DT A C7 1 ATOM 61 C C6 . DT A 1 3 ? 35.405 17.777 -5.709 1.00 14.08 ? 3 DT A C6 1 ATOM 62 P P . DA A 1 4 ? 38.398 13.203 -5.571 1.00 24.17 ? 4 DA A P 1 ATOM 63 O OP1 . DA A 1 4 ? 39.280 12.101 -6.001 1.00 32.72 ? 4 DA A OP1 1 ATOM 64 O OP2 . DA A 1 4 ? 36.973 13.079 -5.264 1.00 21.29 ? 4 DA A OP2 1 ATOM 65 O "O5'" . DA A 1 4 ? 39.075 13.903 -4.275 1.00 18.93 ? 4 DA A "O5'" 1 ATOM 66 C "C5'" . DA A 1 4 ? 40.474 14.171 -4.282 1.00 20.79 ? 4 DA A "C5'" 1 ATOM 67 C "C4'" . DA A 1 4 ? 40.854 15.040 -3.092 1.00 16.44 ? 4 DA A "C4'" 1 ATOM 68 O "O4'" . DA A 1 4 ? 40.099 16.269 -3.085 1.00 16.71 ? 4 DA A "O4'" 1 ATOM 69 C "C3'" . DA A 1 4 ? 40.561 14.452 -1.730 1.00 12.91 ? 4 DA A "C3'" 1 ATOM 70 O "O3'" . DA A 1 4 ? 41.594 13.565 -1.360 1.00 17.94 ? 4 DA A "O3'" 1 ATOM 71 C "C2'" . DA A 1 4 ? 40.493 15.672 -0.835 1.00 16.92 ? 4 DA A "C2'" 1 ATOM 72 C "C1'" . DA A 1 4 ? 39.832 16.685 -1.747 1.00 17.66 ? 4 DA A "C1'" 1 ATOM 73 N N9 . DA A 1 4 ? 38.370 16.762 -1.567 1.00 14.85 ? 4 DA A N9 1 ATOM 74 C C8 . DA A 1 4 ? 37.380 16.140 -2.295 1.00 12.68 ? 4 DA A C8 1 ATOM 75 N N7 . DA A 1 4 ? 36.174 16.402 -1.892 1.00 16.59 ? 4 DA A N7 1 ATOM 76 C C5 . DA A 1 4 ? 36.386 17.257 -0.815 1.00 15.04 ? 4 DA A C5 1 ATOM 77 C C6 . DA A 1 4 ? 35.485 17.899 0.054 1.00 15.11 ? 4 DA A C6 1 ATOM 78 N N6 . DA A 1 4 ? 34.160 17.762 -0.042 1.00 17.01 ? 4 DA A N6 1 ATOM 79 N N1 . DA A 1 4 ? 36.042 18.677 1.012 1.00 15.96 ? 4 DA A N1 1 ATOM 80 C C2 . DA A 1 4 ? 37.375 18.798 1.089 1.00 16.90 ? 4 DA A C2 1 ATOM 81 N N3 . DA A 1 4 ? 38.334 18.251 0.337 1.00 15.29 ? 4 DA A N3 1 ATOM 82 C C4 . DA A 1 4 ? 37.722 17.490 -0.597 1.00 14.69 ? 4 DA A C4 1 ATOM 83 P P . DT A 1 5 ? 41.314 12.277 -0.461 1.00 18.77 ? 5 DT A P 1 ATOM 84 O OP1 . DT A 1 5 ? 42.610 11.543 -0.440 1.00 20.74 ? 5 DT A OP1 1 ATOM 85 O OP2 . DT A 1 5 ? 40.040 11.672 -0.836 1.00 17.07 ? 5 DT A OP2 1 ATOM 86 O "O5'" . DT A 1 5 ? 41.100 12.918 1.017 1.00 17.26 ? 5 DT A "O5'" 1 ATOM 87 C "C5'" . DT A 1 5 ? 42.167 13.615 1.686 1.00 18.14 ? 5 DT A "C5'" 1 ATOM 88 C "C4'" . DT A 1 5 ? 41.611 14.342 2.887 1.00 13.88 ? 5 DT A "C4'" 1 ATOM 89 O "O4'" . DT A 1 5 ? 40.722 15.385 2.436 1.00 17.27 ? 5 DT A "O4'" 1 ATOM 90 C "C3'" . DT A 1 5 ? 40.728 13.562 3.868 1.00 14.85 ? 5 DT A "C3'" 1 ATOM 91 O "O3'" . DT A 1 5 ? 41.534 12.771 4.718 1.00 16.85 ? 5 DT A "O3'" 1 ATOM 92 C "C2'" . DT A 1 5 ? 39.998 14.684 4.549 1.00 14.84 ? 5 DT A "C2'" 1 ATOM 93 C "C1'" . DT A 1 5 ? 39.710 15.618 3.396 1.00 18.10 ? 5 DT A "C1'" 1 ATOM 94 N N1 . DT A 1 5 ? 38.389 15.340 2.810 1.00 15.23 ? 5 DT A N1 1 ATOM 95 C C2 . DT A 1 5 ? 37.317 16.003 3.383 1.00 16.77 ? 5 DT A C2 1 ATOM 96 O O2 . DT A 1 5 ? 37.494 16.772 4.311 1.00 18.05 ? 5 DT A O2 1 ATOM 97 N N3 . DT A 1 5 ? 36.113 15.718 2.805 1.00 15.50 ? 5 DT A N3 1 ATOM 98 C C4 . DT A 1 5 ? 35.866 14.859 1.767 1.00 16.01 ? 5 DT A C4 1 ATOM 99 O O4 . DT A 1 5 ? 34.721 14.720 1.378 1.00 16.10 ? 5 DT A O4 1 ATOM 100 C C5 . DT A 1 5 ? 37.020 14.195 1.216 1.00 16.66 ? 5 DT A C5 1 ATOM 101 C C7 . DT A 1 5 ? 36.802 13.250 0.069 1.00 20.10 ? 5 DT A C7 1 ATOM 102 C C6 . DT A 1 5 ? 38.202 14.470 1.766 1.00 16.83 ? 5 DT A C6 1 ATOM 103 P P . DA A 1 6 ? 40.954 11.500 5.500 1.00 20.61 ? 6 DA A P 1 ATOM 104 O OP1 . DA A 1 6 ? 42.152 10.861 6.103 1.00 21.50 ? 6 DA A OP1 1 ATOM 105 O OP2 . DA A 1 6 ? 40.039 10.713 4.656 1.00 20.30 ? 6 DA A OP2 1 ATOM 106 O "O5'" . DA A 1 6 ? 40.063 12.213 6.620 1.00 18.25 ? 6 DA A "O5'" 1 ATOM 107 C "C5'" . DA A 1 6 ? 40.630 12.931 7.713 1.00 19.33 ? 6 DA A "C5'" 1 ATOM 108 C "C4'" . DA A 1 6 ? 39.532 13.464 8.595 1.00 18.49 ? 6 DA A "C4'" 1 ATOM 109 O "O4'" . DA A 1 6 ? 38.734 14.428 7.855 1.00 18.38 ? 6 DA A "O4'" 1 ATOM 110 C "C3'" . DA A 1 6 ? 38.520 12.441 9.092 1.00 17.46 ? 6 DA A "C3'" 1 ATOM 111 O "O3'" . DA A 1 6 ? 39.050 11.773 10.234 1.00 25.60 ? 6 DA A "O3'" 1 ATOM 112 C "C2'" . DA A 1 6 ? 37.326 13.295 9.372 1.00 18.13 ? 6 DA A "C2'" 1 ATOM 113 C "C1'" . DA A 1 6 ? 37.377 14.317 8.255 1.00 18.16 ? 6 DA A "C1'" 1 ATOM 114 N N9 . DA A 1 6 ? 36.559 13.921 7.084 1.00 16.87 ? 6 DA A N9 1 ATOM 115 C C8 . DA A 1 6 ? 36.958 13.200 5.972 1.00 16.83 ? 6 DA A C8 1 ATOM 116 N N7 . DA A 1 6 ? 35.985 13.008 5.103 1.00 15.19 ? 6 DA A N7 1 ATOM 117 C C5 . DA A 1 6 ? 34.909 13.648 5.702 1.00 14.52 ? 6 DA A C5 1 ATOM 118 C C6 . DA A 1 6 ? 33.567 13.823 5.308 1.00 15.00 ? 6 DA A C6 1 ATOM 119 N N6 . DA A 1 6 ? 33.081 13.342 4.160 1.00 18.74 ? 6 DA A N6 1 ATOM 120 N N1 . DA A 1 6 ? 32.722 14.501 6.109 1.00 13.13 ? 6 DA A N1 1 ATOM 121 C C2 . DA A 1 6 ? 33.212 14.986 7.262 1.00 15.99 ? 6 DA A C2 1 ATOM 122 N N3 . DA A 1 6 ? 34.440 14.898 7.754 1.00 14.59 ? 6 DA A N3 1 ATOM 123 C C4 . DA A 1 6 ? 35.248 14.212 6.921 1.00 14.93 ? 6 DA A C4 1 ATOM 124 P P . DC A 1 7 ? 38.572 10.291 10.596 1.00 26.42 ? 7 DC A P 1 ATOM 125 O OP1 . DC A 1 7 ? 39.348 9.912 11.816 1.00 33.55 ? 7 DC A OP1 1 ATOM 126 O OP2 . DC A 1 7 ? 38.653 9.411 9.423 1.00 26.79 ? 7 DC A OP2 1 ATOM 127 O "O5'" . DC A 1 7 ? 37.038 10.446 10.992 1.00 21.14 ? 7 DC A "O5'" 1 ATOM 128 C "C5'" . DC A 1 7 ? 36.651 11.204 12.147 1.00 19.33 ? 7 DC A "C5'" 1 ATOM 129 C "C4'" . DC A 1 7 ? 35.178 11.508 12.087 1.00 18.57 ? 7 DC A "C4'" 1 ATOM 130 O "O4'" . DC A 1 7 ? 34.851 12.215 10.857 1.00 15.86 ? 7 DC A "O4'" 1 ATOM 131 C "C3'" . DC A 1 7 ? 34.220 10.322 12.040 1.00 19.02 ? 7 DC A "C3'" 1 ATOM 132 O "O3'" . DC A 1 7 ? 34.108 9.776 13.349 1.00 24.28 ? 7 DC A "O3'" 1 ATOM 133 C "C2'" . DC A 1 7 ? 32.948 10.926 11.480 1.00 13.13 ? 7 DC A "C2'" 1 ATOM 134 C "C1'" . DC A 1 7 ? 33.513 11.937 10.493 1.00 15.98 ? 7 DC A "C1'" 1 ATOM 135 N N1 . DC A 1 7 ? 33.500 11.443 9.070 1.00 13.98 ? 7 DC A N1 1 ATOM 136 C C2 . DC A 1 7 ? 32.302 11.558 8.390 1.00 16.99 ? 7 DC A C2 1 ATOM 137 O O2 . DC A 1 7 ? 31.304 12.045 8.934 1.00 17.68 ? 7 DC A O2 1 ATOM 138 N N3 . DC A 1 7 ? 32.220 11.126 7.089 1.00 14.02 ? 7 DC A N3 1 ATOM 139 C C4 . DC A 1 7 ? 33.363 10.613 6.591 1.00 15.62 ? 7 DC A C4 1 ATOM 140 N N4 . DC A 1 7 ? 33.251 10.197 5.313 1.00 18.23 ? 7 DC A N4 1 ATOM 141 C C5 . DC A 1 7 ? 34.613 10.478 7.267 1.00 18.74 ? 7 DC A C5 1 ATOM 142 C C6 . DC A 1 7 ? 34.658 10.916 8.550 1.00 15.14 ? 7 DC A C6 1 ATOM 143 P P . DC A 1 8 ? 33.724 8.228 13.607 1.00 24.58 ? 8 DC A P 1 ATOM 144 O OP1 . DC A 1 8 ? 33.755 8.058 15.098 1.00 32.42 ? 8 DC A OP1 1 ATOM 145 O OP2 . DC A 1 8 ? 34.629 7.399 12.799 1.00 27.75 ? 8 DC A OP2 1 ATOM 146 O "O5'" . DC A 1 8 ? 32.252 8.086 13.098 1.00 18.72 ? 8 DC A "O5'" 1 ATOM 147 C "C5'" . DC A 1 8 ? 31.116 8.613 13.769 1.00 18.14 ? 8 DC A "C5'" 1 ATOM 148 C "C4'" . DC A 1 8 ? 29.843 8.303 13.054 1.00 18.72 ? 8 DC A "C4'" 1 ATOM 149 O "O4'" . DC A 1 8 ? 29.818 9.057 11.797 1.00 16.39 ? 8 DC A "O4'" 1 ATOM 150 C "C3'" . DC A 1 8 ? 29.631 6.860 12.637 1.00 20.86 ? 8 DC A "C3'" 1 ATOM 151 O "O3'" . DC A 1 8 ? 29.140 6.061 13.708 1.00 21.52 ? 8 DC A "O3'" 1 ATOM 152 C "C2'" . DC A 1 8 ? 28.623 6.992 11.521 1.00 15.60 ? 8 DC A "C2'" 1 ATOM 153 C "C1'" . DC A 1 8 ? 28.976 8.326 10.904 1.00 14.25 ? 8 DC A "C1'" 1 ATOM 154 N N1 . DC A 1 8 ? 29.703 8.135 9.632 1.00 15.69 ? 8 DC A N1 1 ATOM 155 C C2 . DC A 1 8 ? 28.946 8.048 8.459 1.00 16.80 ? 8 DC A C2 1 ATOM 156 O O2 . DC A 1 8 ? 27.721 8.140 8.566 1.00 17.26 ? 8 DC A O2 1 ATOM 157 N N3 . DC A 1 8 ? 29.588 7.874 7.286 1.00 14.48 ? 8 DC A N3 1 ATOM 158 C C4 . DC A 1 8 ? 30.912 7.790 7.310 1.00 19.08 ? 8 DC A C4 1 ATOM 159 N N4 . DC A 1 8 ? 31.524 7.616 6.155 1.00 20.81 ? 8 DC A N4 1 ATOM 160 C C5 . DC A 1 8 ? 31.711 7.872 8.506 1.00 16.40 ? 8 DC A C5 1 ATOM 161 C C6 . DC A 1 8 ? 31.062 8.047 9.650 1.00 15.87 ? 8 DC A C6 1 ATOM 162 O "O5'" . DG B 1 1 ? 25.151 7.201 -2.227 1.00 22.54 ? 1 DG B "O5'" 1 ATOM 163 C "C5'" . DG B 1 1 ? 23.750 7.032 -2.018 1.00 19.27 ? 1 DG B "C5'" 1 ATOM 164 C "C4'" . DG B 1 1 ? 23.376 7.179 -0.562 1.00 19.08 ? 1 DG B "C4'" 1 ATOM 165 O "O4'" . DG B 1 1 ? 24.014 6.114 0.211 1.00 18.58 ? 1 DG B "O4'" 1 ATOM 166 C "C3'" . DG B 1 1 ? 23.811 8.439 0.168 1.00 19.34 ? 1 DG B "C3'" 1 ATOM 167 O "O3'" . DG B 1 1 ? 23.023 9.561 -0.175 1.00 20.48 ? 1 DG B "O3'" 1 ATOM 168 C "C2'" . DG B 1 1 ? 23.625 7.951 1.598 1.00 18.31 ? 1 DG B "C2'" 1 ATOM 169 C "C1'" . DG B 1 1 ? 24.268 6.565 1.520 1.00 15.97 ? 1 DG B "C1'" 1 ATOM 170 N N9 . DG B 1 1 ? 25.705 6.646 1.768 1.00 14.13 ? 1 DG B N9 1 ATOM 171 C C8 . DG B 1 1 ? 26.739 6.435 0.886 1.00 17.62 ? 1 DG B C8 1 ATOM 172 N N7 . DG B 1 1 ? 27.921 6.583 1.409 1.00 18.45 ? 1 DG B N7 1 ATOM 173 C C5 . DG B 1 1 ? 27.655 6.916 2.725 1.00 13.37 ? 1 DG B C5 1 ATOM 174 C C6 . DG B 1 1 ? 28.564 7.196 3.776 1.00 15.60 ? 1 DG B C6 1 ATOM 175 O O6 . DG B 1 1 ? 29.786 7.206 3.755 1.00 18.28 ? 1 DG B O6 1 ATOM 176 N N1 . DG B 1 1 ? 27.827 7.480 4.925 1.00 15.07 ? 1 DG B N1 1 ATOM 177 C C2 . DG B 1 1 ? 26.486 7.501 5.073 1.00 15.54 ? 1 DG B C2 1 ATOM 178 N N2 . DG B 1 1 ? 25.981 7.803 6.285 1.00 19.14 ? 1 DG B N2 1 ATOM 179 N N3 . DG B 1 1 ? 25.613 7.238 4.090 1.00 17.34 ? 1 DG B N3 1 ATOM 180 C C4 . DG B 1 1 ? 26.310 6.961 2.970 1.00 12.88 ? 1 DG B C4 1 ATOM 181 P P . DG B 1 2 ? 23.558 11.071 -0.264 1.00 20.78 ? 2 DG B P 1 ATOM 182 O OP1 . DG B 1 2 ? 22.482 11.871 -0.935 1.00 23.89 ? 2 DG B OP1 1 ATOM 183 O OP2 . DG B 1 2 ? 24.917 11.082 -0.786 1.00 18.43 ? 2 DG B OP2 1 ATOM 184 O "O5'" . DG B 1 2 ? 23.594 11.516 1.273 1.00 18.25 ? 2 DG B "O5'" 1 ATOM 185 C "C5'" . DG B 1 2 ? 22.441 11.573 2.108 1.00 19.55 ? 2 DG B "C5'" 1 ATOM 186 C "C4'" . DG B 1 2 ? 22.828 11.725 3.558 1.00 19.70 ? 2 DG B "C4'" 1 ATOM 187 O "O4'" . DG B 1 2 ? 23.681 10.620 3.947 1.00 19.00 ? 2 DG B "O4'" 1 ATOM 188 C "C3'" . DG B 1 2 ? 23.642 12.955 3.920 1.00 18.89 ? 2 DG B "C3'" 1 ATOM 189 O "O3'" . DG B 1 2 ? 22.799 14.087 4.093 1.00 21.52 ? 2 DG B "O3'" 1 ATOM 190 C "C2'" . DG B 1 2 ? 24.322 12.508 5.189 1.00 18.85 ? 2 DG B "C2'" 1 ATOM 191 C "C1'" . DG B 1 2 ? 24.653 11.053 4.881 1.00 21.15 ? 2 DG B "C1'" 1 ATOM 192 N N9 . DG B 1 2 ? 26.008 10.865 4.307 1.00 17.43 ? 2 DG B N9 1 ATOM 193 C C8 . DG B 1 2 ? 26.368 10.543 3.025 1.00 16.45 ? 2 DG B C8 1 ATOM 194 N N7 . DG B 1 2 ? 27.659 10.459 2.869 1.00 15.76 ? 2 DG B N7 1 ATOM 195 C C5 . DG B 1 2 ? 28.197 10.740 4.127 1.00 13.57 ? 2 DG B C5 1 ATOM 196 C C6 . DG B 1 2 ? 29.528 10.791 4.546 1.00 13.42 ? 2 DG B C6 1 ATOM 197 O O6 . DG B 1 2 ? 30.593 10.609 3.953 1.00 16.25 ? 2 DG B O6 1 ATOM 198 N N1 . DG B 1 2 ? 29.626 11.116 5.920 1.00 14.99 ? 2 DG B N1 1 ATOM 199 C C2 . DG B 1 2 ? 28.530 11.349 6.716 1.00 14.02 ? 2 DG B C2 1 ATOM 200 N N2 . DG B 1 2 ? 28.801 11.646 7.996 1.00 18.62 ? 2 DG B N2 1 ATOM 201 N N3 . DG B 1 2 ? 27.278 11.301 6.325 1.00 14.11 ? 2 DG B N3 1 ATOM 202 C C4 . DG B 1 2 ? 27.176 10.991 5.014 1.00 13.12 ? 2 DG B C4 1 ATOM 203 P P . DT B 1 3 ? 23.304 15.581 3.834 1.00 21.82 ? 3 DT B P 1 ATOM 204 O OP1 . DT B 1 3 ? 22.090 16.452 3.985 1.00 25.60 ? 3 DT B OP1 1 ATOM 205 O OP2 . DT B 1 3 ? 24.115 15.682 2.613 1.00 19.78 ? 3 DT B OP2 1 ATOM 206 O "O5'" . DT B 1 3 ? 24.253 15.857 5.074 1.00 20.75 ? 3 DT B "O5'" 1 ATOM 207 C "C5'" . DT B 1 3 ? 23.730 15.878 6.405 1.00 23.74 ? 3 DT B "C5'" 1 ATOM 208 C "C4'" . DT B 1 3 ? 24.846 16.215 7.369 1.00 16.83 ? 3 DT B "C4'" 1 ATOM 209 O "O4'" . DT B 1 3 ? 25.707 15.039 7.453 1.00 20.59 ? 3 DT B "O4'" 1 ATOM 210 C "C3'" . DT B 1 3 ? 25.816 17.320 7.029 1.00 20.58 ? 3 DT B "C3'" 1 ATOM 211 O "O3'" . DT B 1 3 ? 25.301 18.606 7.345 1.00 25.22 ? 3 DT B "O3'" 1 ATOM 212 C "C2'" . DT B 1 3 ? 27.005 16.960 7.893 1.00 17.65 ? 3 DT B "C2'" 1 ATOM 213 C "C1'" . DT B 1 3 ? 27.026 15.464 7.705 1.00 17.21 ? 3 DT B "C1'" 1 ATOM 214 N N1 . DT B 1 3 ? 27.867 15.047 6.545 1.00 17.43 ? 3 DT B N1 1 ATOM 215 C C2 . DT B 1 3 ? 29.206 14.933 6.780 1.00 17.13 ? 3 DT B C2 1 ATOM 216 O O2 . DT B 1 3 ? 29.739 15.144 7.853 1.00 21.19 ? 3 DT B O2 1 ATOM 217 N N3 . DT B 1 3 ? 29.939 14.550 5.688 1.00 16.17 ? 3 DT B N3 1 ATOM 218 C C4 . DT B 1 3 ? 29.474 14.276 4.426 1.00 15.22 ? 3 DT B C4 1 ATOM 219 O O4 . DT B 1 3 ? 30.307 13.948 3.582 1.00 17.17 ? 3 DT B O4 1 ATOM 220 C C5 . DT B 1 3 ? 28.057 14.422 4.262 1.00 18.20 ? 3 DT B C5 1 ATOM 221 C C7 . DT B 1 3 ? 27.427 14.161 2.925 1.00 17.30 ? 3 DT B C7 1 ATOM 222 C C6 . DT B 1 3 ? 27.311 14.799 5.309 1.00 18.01 ? 3 DT B C6 1 ATOM 223 P P . DA B 1 4 ? 25.708 19.926 6.564 1.00 23.95 ? 4 DA B P 1 ATOM 224 O OP1 . DA B 1 4 ? 24.901 21.034 7.172 1.00 30.12 ? 4 DA B OP1 1 ATOM 225 O OP2 . DA B 1 4 ? 25.646 19.709 5.096 1.00 24.13 ? 4 DA B OP2 1 ATOM 226 O "O5'" . DA B 1 4 ? 27.232 20.148 6.922 1.00 19.57 ? 4 DA B "O5'" 1 ATOM 227 C "C5'" . DA B 1 4 ? 27.592 20.501 8.261 1.00 23.96 ? 4 DA B "C5'" 1 ATOM 228 C "C4'" . DA B 1 4 ? 29.086 20.338 8.426 1.00 16.18 ? 4 DA B "C4'" 1 ATOM 229 O "O4'" . DA B 1 4 ? 29.496 19.004 8.038 1.00 16.42 ? 4 DA B "O4'" 1 ATOM 230 C "C3'" . DA B 1 4 ? 29.963 21.223 7.564 1.00 17.35 ? 4 DA B "C3'" 1 ATOM 231 O "O3'" . DA B 1 4 ? 30.087 22.525 8.102 1.00 19.64 ? 4 DA B "O3'" 1 ATOM 232 C "C2'" . DA B 1 4 ? 31.286 20.519 7.594 1.00 17.29 ? 4 DA B "C2'" 1 ATOM 233 C "C1'" . DA B 1 4 ? 30.846 19.076 7.615 1.00 16.55 ? 4 DA B "C1'" 1 ATOM 234 N N9 . DA B 1 4 ? 30.875 18.436 6.275 1.00 14.06 ? 4 DA B N9 1 ATOM 235 C C8 . DA B 1 4 ? 29.805 18.202 5.473 1.00 14.39 ? 4 DA B C8 1 ATOM 236 N N7 . DA B 1 4 ? 30.160 17.620 4.349 1.00 14.63 ? 4 DA B N7 1 ATOM 237 C C5 . DA B 1 4 ? 31.543 17.479 4.458 1.00 15.84 ? 4 DA B C5 1 ATOM 238 C C6 . DA B 1 4 ? 32.538 16.948 3.625 1.00 13.09 ? 4 DA B C6 1 ATOM 239 N N6 . DA B 1 4 ? 32.236 16.426 2.439 1.00 18.07 ? 4 DA B N6 1 ATOM 240 N N1 . DA B 1 4 ? 33.806 16.976 4.050 1.00 13.93 ? 4 DA B N1 1 ATOM 241 C C2 . DA B 1 4 ? 34.128 17.497 5.240 1.00 18.04 ? 4 DA B C2 1 ATOM 242 N N3 . DA B 1 4 ? 33.263 18.035 6.119 1.00 15.12 ? 4 DA B N3 1 ATOM 243 C C4 . DA B 1 4 ? 32.006 17.986 5.657 1.00 13.34 ? 4 DA B C4 1 ATOM 244 P P . DT B 1 5 ? 30.346 23.817 7.189 1.00 21.77 ? 5 DT B P 1 ATOM 245 O OP1 . DT B 1 5 ? 30.077 24.998 8.075 1.00 25.06 ? 5 DT B OP1 1 ATOM 246 O OP2 . DT B 1 5 ? 29.618 23.674 5.909 1.00 24.32 ? 5 DT B OP2 1 ATOM 247 O "O5'" . DT B 1 5 ? 31.889 23.796 6.886 1.00 19.40 ? 5 DT B "O5'" 1 ATOM 248 C "C5'" . DT B 1 5 ? 32.866 23.859 7.919 1.00 22.03 ? 5 DT B "C5'" 1 ATOM 249 C "C4'" . DT B 1 5 ? 34.239 23.639 7.361 1.00 20.86 ? 5 DT B "C4'" 1 ATOM 250 O "O4'" . DT B 1 5 ? 34.322 22.259 6.976 1.00 19.03 ? 5 DT B "O4'" 1 ATOM 251 C "C3'" . DT B 1 5 ? 34.623 24.386 6.087 1.00 26.74 ? 5 DT B "C3'" 1 ATOM 252 O "O3'" . DT B 1 5 ? 35.033 25.702 6.383 1.00 26.34 ? 5 DT B "O3'" 1 ATOM 253 C "C2'" . DT B 1 5 ? 35.740 23.534 5.539 1.00 25.02 ? 5 DT B "C2'" 1 ATOM 254 C "C1'" . DT B 1 5 ? 35.232 22.155 5.890 1.00 21.61 ? 5 DT B "C1'" 1 ATOM 255 N N1 . DT B 1 5 ? 34.496 21.519 4.771 1.00 19.71 ? 5 DT B N1 1 ATOM 256 C C2 . DT B 1 5 ? 35.298 20.772 3.911 1.00 21.58 ? 5 DT B C2 1 ATOM 257 O O2 . DT B 1 5 ? 36.494 20.667 4.094 1.00 21.55 ? 5 DT B O2 1 ATOM 258 N N3 . DT B 1 5 ? 34.574 20.206 2.900 1.00 17.71 ? 5 DT B N3 1 ATOM 259 C C4 . DT B 1 5 ? 33.233 20.304 2.662 1.00 14.87 ? 5 DT B C4 1 ATOM 260 O O4 . DT B 1 5 ? 32.744 19.730 1.701 1.00 17.36 ? 5 DT B O4 1 ATOM 261 C C5 . DT B 1 5 ? 32.460 21.103 3.603 1.00 14.69 ? 5 DT B C5 1 ATOM 262 C C7 . DT B 1 5 ? 30.993 21.230 3.378 1.00 19.10 ? 5 DT B C7 1 ATOM 263 C C6 . DT B 1 5 ? 33.146 21.669 4.604 1.00 13.77 ? 5 DT B C6 1 ATOM 264 P P . DA B 1 6 ? 35.100 26.859 5.276 1.00 32.25 ? 6 DA B P 1 ATOM 265 O OP1 . DA B 1 6 ? 35.566 28.071 6.017 1.00 35.35 ? 6 DA B OP1 1 ATOM 266 O OP2 . DA B 1 6 ? 33.853 26.836 4.502 1.00 29.58 ? 6 DA B OP2 1 ATOM 267 O "O5'" . DA B 1 6 ? 36.289 26.413 4.303 1.00 22.46 ? 6 DA B "O5'" 1 ATOM 268 C "C5'" . DA B 1 6 ? 37.643 26.441 4.748 1.00 21.10 ? 6 DA B "C5'" 1 ATOM 269 C "C4'" . DA B 1 6 ? 38.519 25.919 3.628 1.00 21.26 ? 6 DA B "C4'" 1 ATOM 270 O "O4'" . DA B 1 6 ? 38.119 24.545 3.424 1.00 23.26 ? 6 DA B "O4'" 1 ATOM 271 C "C3'" . DA B 1 6 ? 38.407 26.533 2.249 1.00 21.23 ? 6 DA B "C3'" 1 ATOM 272 O "O3'" . DA B 1 6 ? 39.285 27.624 2.063 1.00 21.73 ? 6 DA B "O3'" 1 ATOM 273 C "C2'" . DA B 1 6 ? 38.815 25.420 1.315 1.00 30.22 ? 6 DA B "C2'" 1 ATOM 274 C "C1'" . DA B 1 6 ? 38.355 24.197 2.061 1.00 32.06 ? 6 DA B "C1'" 1 ATOM 275 N N9 . DA B 1 6 ? 37.090 23.659 1.515 1.00 20.73 ? 6 DA B N9 1 ATOM 276 C C8 . DA B 1 6 ? 35.808 23.943 1.885 1.00 18.88 ? 6 DA B C8 1 ATOM 277 N N7 . DA B 1 6 ? 34.921 23.282 1.187 1.00 18.71 ? 6 DA B N7 1 ATOM 278 C C5 . DA B 1 6 ? 35.703 22.521 0.306 1.00 17.03 ? 6 DA B C5 1 ATOM 279 C C6 . DA B 1 6 ? 35.369 21.599 -0.708 1.00 14.93 ? 6 DA B C6 1 ATOM 280 N N6 . DA B 1 6 ? 34.109 21.297 -0.989 1.00 18.63 ? 6 DA B N6 1 ATOM 281 N N1 . DA B 1 6 ? 36.398 21.035 -1.380 1.00 14.57 ? 6 DA B N1 1 ATOM 282 C C2 . DA B 1 6 ? 37.661 21.345 -1.090 1.00 15.18 ? 6 DA B C2 1 ATOM 283 N N3 . DA B 1 6 ? 38.116 22.203 -0.153 1.00 18.84 ? 6 DA B N3 1 ATOM 284 C C4 . DA B 1 6 ? 37.048 22.739 0.489 1.00 19.44 ? 6 DA B C4 1 ATOM 285 P P . DC B 1 7 ? 38.932 28.753 0.967 1.00 27.25 ? 7 DC B P 1 ATOM 286 O OP1 . DC B 1 7 ? 39.922 29.828 1.199 1.00 31.32 ? 7 DC B OP1 1 ATOM 287 O OP2 . DC B 1 7 ? 37.490 29.013 0.927 1.00 28.87 ? 7 DC B OP2 1 ATOM 288 O "O5'" . DC B 1 7 ? 39.299 28.061 -0.439 1.00 22.61 ? 7 DC B "O5'" 1 ATOM 289 C "C5'" . DC B 1 7 ? 40.645 27.675 -0.709 1.00 17.24 ? 7 DC B "C5'" 1 ATOM 290 C "C4'" . DC B 1 7 ? 40.659 26.721 -1.880 1.00 15.02 ? 7 DC B "C4'" 1 ATOM 291 O "O4'" . DC B 1 7 ? 39.794 25.602 -1.551 1.00 19.46 ? 7 DC B "O4'" 1 ATOM 292 C "C3'" . DC B 1 7 ? 40.087 27.163 -3.209 1.00 18.13 ? 7 DC B "C3'" 1 ATOM 293 O "O3'" . DC B 1 7 ? 41.032 27.930 -3.922 1.00 19.10 ? 7 DC B "O3'" 1 ATOM 294 C "C2'" . DC B 1 7 ? 39.794 25.851 -3.894 1.00 16.47 ? 7 DC B "C2'" 1 ATOM 295 C "C1'" . DC B 1 7 ? 39.335 24.978 -2.746 1.00 18.73 ? 7 DC B "C1'" 1 ATOM 296 N N1 . DC B 1 7 ? 37.874 24.848 -2.639 1.00 15.40 ? 7 DC B N1 1 ATOM 297 C C2 . DC B 1 7 ? 37.244 23.867 -3.447 1.00 13.07 ? 7 DC B C2 1 ATOM 298 O O2 . DC B 1 7 ? 37.988 23.200 -4.168 1.00 16.83 ? 7 DC B O2 1 ATOM 299 N N3 . DC B 1 7 ? 35.916 23.736 -3.352 1.00 13.72 ? 7 DC B N3 1 ATOM 300 C C4 . DC B 1 7 ? 35.185 24.494 -2.540 1.00 15.08 ? 7 DC B C4 1 ATOM 301 N N4 . DC B 1 7 ? 33.860 24.323 -2.494 1.00 18.35 ? 7 DC B N4 1 ATOM 302 C C5 . DC B 1 7 ? 35.787 25.496 -1.719 1.00 17.33 ? 7 DC B C5 1 ATOM 303 C C6 . DC B 1 7 ? 37.122 25.610 -1.825 1.00 18.29 ? 7 DC B C6 1 ATOM 304 P P . DC B 1 8 ? 40.568 28.809 -5.173 1.00 22.36 ? 8 DC B P 1 ATOM 305 O OP1 . DC B 1 8 ? 41.757 29.542 -5.616 1.00 25.39 ? 8 DC B OP1 1 ATOM 306 O OP2 . DC B 1 8 ? 39.278 29.448 -4.921 1.00 21.50 ? 8 DC B OP2 1 ATOM 307 O "O5'" . DC B 1 8 ? 40.230 27.626 -6.232 1.00 25.96 ? 8 DC B "O5'" 1 ATOM 308 C "C5'" . DC B 1 8 ? 40.903 27.287 -7.408 1.00 22.93 ? 8 DC B "C5'" 1 ATOM 309 C "C4'" . DC B 1 8 ? 40.260 26.148 -8.168 1.00 15.77 ? 8 DC B "C4'" 1 ATOM 310 O "O4'" . DC B 1 8 ? 39.172 25.528 -7.456 1.00 18.53 ? 8 DC B "O4'" 1 ATOM 311 C "C3'" . DC B 1 8 ? 39.650 26.579 -9.521 1.00 20.49 ? 8 DC B "C3'" 1 ATOM 312 O "O3'" . DC B 1 8 ? 40.203 25.763 -10.539 1.00 29.71 ? 8 DC B "O3'" 1 ATOM 313 C "C2'" . DC B 1 8 ? 38.166 26.414 -9.364 1.00 18.32 ? 8 DC B "C2'" 1 ATOM 314 C "C1'" . DC B 1 8 ? 38.039 25.376 -8.281 1.00 19.72 ? 8 DC B "C1'" 1 ATOM 315 N N1 . DC B 1 8 ? 36.832 25.574 -7.464 1.00 14.85 ? 8 DC B N1 1 ATOM 316 C C2 . DC B 1 8 ? 35.679 24.897 -7.851 1.00 15.24 ? 8 DC B C2 1 ATOM 317 O O2 . DC B 1 8 ? 35.726 24.167 -8.865 1.00 16.31 ? 8 DC B O2 1 ATOM 318 N N3 . DC B 1 8 ? 34.576 25.075 -7.110 1.00 14.50 ? 8 DC B N3 1 ATOM 319 C C4 . DC B 1 8 ? 34.594 25.878 -6.039 1.00 14.47 ? 8 DC B C4 1 ATOM 320 N N4 . DC B 1 8 ? 33.431 25.953 -5.406 1.00 18.23 ? 8 DC B N4 1 ATOM 321 C C5 . DC B 1 8 ? 35.768 26.572 -5.633 1.00 18.39 ? 8 DC B C5 1 ATOM 322 C C6 . DC B 1 8 ? 36.872 26.399 -6.367 1.00 18.35 ? 8 DC B C6 1 HETATM 323 O O . HOH C 2 . ? 40.497 18.826 2.162 1.00 23.29 ? 102 HOH A O 1 HETATM 324 O O . HOH C 2 . ? 34.273 6.463 6.509 1.00 29.68 ? 103 HOH A O 1 HETATM 325 O O . HOH C 2 . ? 34.060 14.948 -2.682 1.00 23.96 ? 104 HOH A O 1 HETATM 326 O O . HOH C 2 . ? 33.857 10.884 1.784 1.00 36.79 ? 107 HOH A O 1 HETATM 327 O O . HOH C 2 . ? 29.325 20.501 -5.144 1.00 41.70 ? 111 HOH A O 1 HETATM 328 O O . HOH C 2 . ? 30.588 5.646 16.119 1.00 27.88 ? 112 HOH A O 1 HETATM 329 O O . HOH C 2 . ? 36.148 11.102 3.011 1.00 29.62 ? 113 HOH A O 1 HETATM 330 O O . HOH C 2 . ? 25.462 17.279 -7.378 1.00 50.51 ? 114 HOH A O 1 HETATM 331 O O . HOH C 2 . ? 31.046 18.653 -2.435 1.00 38.45 ? 115 HOH A O 1 HETATM 332 O O . HOH C 2 . ? 25.802 2.533 13.802 1.00 33.70 ? 116 HOH A O 1 HETATM 333 O O . HOH C 2 . ? 27.104 13.953 -9.588 1.00 82.44 ? 117 HOH A O 1 HETATM 334 O O . HOH C 2 . ? 35.772 8.620 4.463 1.00 34.56 ? 118 HOH A O 1 HETATM 335 O O . HOH C 2 . ? 35.590 7.412 9.084 1.00 41.76 ? 122 HOH A O 1 HETATM 336 O O . HOH C 2 . ? 37.825 9.370 6.470 1.00 45.08 ? 123 HOH A O 1 HETATM 337 O O . HOH C 2 . ? 33.786 6.132 10.948 1.00 43.92 ? 124 HOH A O 1 HETATM 338 O O . HOH C 2 . ? 38.460 10.623 1.749 1.00 69.85 ? 125 HOH A O 1 HETATM 339 O O . HOH C 2 . ? 37.642 11.161 -2.545 1.00 42.43 ? 126 HOH A O 1 HETATM 340 O O . HOH C 2 . ? 30.751 23.390 -3.358 1.00 48.35 ? 129 HOH A O 1 HETATM 341 O O . HOH C 2 . ? 42.139 9.465 9.345 1.00 67.26 ? 136 HOH A O 1 HETATM 342 O O . HOH C 2 . ? 31.854 16.366 -1.700 1.00 43.42 ? 139 HOH A O 1 HETATM 343 O O . HOH C 2 . ? 26.233 5.155 13.553 1.00 49.99 ? 140 HOH A O 1 HETATM 344 O O . HOH C 2 . ? 34.324 14.031 -5.390 1.00 37.26 ? 143 HOH A O 1 HETATM 345 O O . HOH C 2 . ? 37.542 7.030 12.911 1.00 69.97 ? 144 HOH A O 1 HETATM 346 O O . HOH C 2 . ? 36.173 12.415 -11.147 1.00 40.30 ? 151 HOH A O 1 HETATM 347 O O . HOH C 2 . ? 25.093 7.424 13.222 1.00 65.77 ? 154 HOH A O 1 HETATM 348 O O . HOH C 2 . ? 37.111 20.203 -9.526 1.00 18.02 ? 155 HOH A O 1 HETATM 349 O O . HOH C 2 . ? 33.065 13.257 -0.157 1.00 38.30 ? 156 HOH A O 1 HETATM 350 O O . HOH D 2 . ? 28.784 17.645 2.007 1.00 26.64 ? 101 HOH B O 1 HETATM 351 O O . HOH D 2 . ? 23.227 7.695 7.008 1.00 28.61 ? 105 HOH B O 1 HETATM 352 O O . HOH D 2 . ? 30.532 13.138 1.131 1.00 37.27 ? 106 HOH B O 1 HETATM 353 O O . HOH D 2 . ? 30.358 19.295 0.255 1.00 30.30 ? 108 HOH B O 1 HETATM 354 O O . HOH D 2 . ? 35.679 18.650 7.896 1.00 37.38 ? 109 HOH B O 1 HETATM 355 O O . HOH D 2 . ? 36.891 22.522 -10.717 1.00 23.03 ? 110 HOH B O 1 HETATM 356 O O . HOH D 2 . ? 28.100 25.006 10.067 1.00 33.69 ? 119 HOH B O 1 HETATM 357 O O . HOH D 2 . ? 26.724 13.142 -0.487 1.00 50.74 ? 120 HOH B O 1 HETATM 358 O O . HOH D 2 . ? 29.970 16.245 0.623 1.00 78.36 ? 121 HOH B O 1 HETATM 359 O O . HOH D 2 . ? 26.379 9.653 -2.403 1.00 51.37 ? 127 HOH B O 1 HETATM 360 O O . HOH D 2 . ? 30.632 10.160 1.435 1.00 45.04 ? 128 HOH B O 1 HETATM 361 O O . HOH D 2 . ? 33.230 28.225 -3.360 1.00 38.90 ? 130 HOH B O 1 HETATM 362 O O . HOH D 2 . ? 36.562 29.485 -3.594 1.00 47.43 ? 131 HOH B O 1 HETATM 363 O O . HOH D 2 . ? 34.351 27.583 1.467 1.00 70.30 ? 132 HOH B O 1 HETATM 364 O O . HOH D 2 . ? 31.923 26.569 -0.913 1.00 50.33 ? 133 HOH B O 1 HETATM 365 O O . HOH D 2 . ? 28.632 4.523 -2.710 1.00 29.89 ? 134 HOH B O 1 HETATM 366 O O . HOH D 2 . ? 24.091 21.137 9.913 1.00 47.27 ? 135 HOH B O 1 HETATM 367 O O . HOH D 2 . ? 39.456 20.641 4.147 1.00 52.33 ? 137 HOH B O 1 HETATM 368 O O . HOH D 2 . ? 25.997 17.998 2.898 1.00 31.16 ? 138 HOH B O 1 HETATM 369 O O . HOH D 2 . ? 22.606 10.425 7.520 1.00 33.99 ? 141 HOH B O 1 HETATM 370 O O . HOH D 2 . ? 25.238 11.239 8.356 1.00 30.15 ? 142 HOH B O 1 HETATM 371 O O . HOH D 2 . ? 21.884 11.007 -3.521 1.00 38.60 ? 145 HOH B O 1 HETATM 372 O O . HOH D 2 . ? 26.145 4.739 -2.267 1.00 23.58 ? 146 HOH B O 1 HETATM 373 O O . HOH D 2 . ? 25.211 9.864 10.330 1.00 81.19 ? 147 HOH B O 1 HETATM 374 O O . HOH D 2 . ? 40.822 28.508 5.002 1.00 76.12 ? 148 HOH B O 1 HETATM 375 O O . HOH D 2 . ? 42.524 28.383 2.711 1.00 70.30 ? 149 HOH B O 1 HETATM 376 O O . HOH D 2 . ? 21.893 12.605 7.640 1.00 54.45 ? 150 HOH B O 1 HETATM 377 O O . HOH D 2 . ? 32.123 23.832 1.306 1.00 31.91 ? 152 HOH B O 1 HETATM 378 O O . HOH D 2 . ? 30.908 24.929 3.848 1.00 35.13 ? 153 HOH B O 1 HETATM 379 O O . HOH D 2 . ? 22.889 19.422 4.020 1.00 58.80 ? 157 HOH B O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DT 3 3 3 DT T A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DT 5 5 5 DT T A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DC 8 8 8 DC C A . n B 1 1 DG 1 1 1 DG G B . n B 1 2 DG 2 2 2 DG G B . n B 1 3 DT 3 3 3 DT T B . n B 1 4 DA 4 4 4 DA A B . n B 1 5 DT 5 5 5 DT T B . n B 1 6 DA 6 6 6 DA A B . n B 1 7 DC 7 7 7 DC C B . n B 1 8 DC 8 8 8 DC C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 102 102 HOH HOH A . C 2 HOH 2 103 103 HOH HOH A . C 2 HOH 3 104 104 HOH HOH A . C 2 HOH 4 107 107 HOH HOH A . C 2 HOH 5 111 111 HOH HOH A . C 2 HOH 6 112 112 HOH HOH A . C 2 HOH 7 113 113 HOH HOH A . C 2 HOH 8 114 114 HOH HOH A . C 2 HOH 9 115 115 HOH HOH A . C 2 HOH 10 116 116 HOH HOH A . C 2 HOH 11 117 117 HOH HOH A . C 2 HOH 12 118 118 HOH HOH A . C 2 HOH 13 122 122 HOH HOH A . C 2 HOH 14 123 123 HOH HOH A . C 2 HOH 15 124 124 HOH HOH A . C 2 HOH 16 125 125 HOH HOH A . C 2 HOH 17 126 126 HOH HOH A . C 2 HOH 18 129 129 HOH HOH A . C 2 HOH 19 136 136 HOH HOH A . C 2 HOH 20 139 139 HOH HOH A . C 2 HOH 21 140 140 HOH HOH A . C 2 HOH 22 143 143 HOH HOH A . C 2 HOH 23 144 144 HOH HOH A . C 2 HOH 24 151 151 HOH HOH A . C 2 HOH 25 154 154 HOH HOH A . C 2 HOH 26 155 155 HOH HOH A . C 2 HOH 27 156 156 HOH HOH A . D 2 HOH 1 101 101 HOH HOH B . D 2 HOH 2 105 105 HOH HOH B . D 2 HOH 3 106 106 HOH HOH B . D 2 HOH 4 108 108 HOH HOH B . D 2 HOH 5 109 109 HOH HOH B . D 2 HOH 6 110 110 HOH HOH B . D 2 HOH 7 119 119 HOH HOH B . D 2 HOH 8 120 120 HOH HOH B . D 2 HOH 9 121 121 HOH HOH B . D 2 HOH 10 127 127 HOH HOH B . D 2 HOH 11 128 128 HOH HOH B . D 2 HOH 12 130 130 HOH HOH B . D 2 HOH 13 131 131 HOH HOH B . D 2 HOH 14 132 132 HOH HOH B . D 2 HOH 15 133 133 HOH HOH B . D 2 HOH 16 134 134 HOH HOH B . D 2 HOH 17 135 135 HOH HOH B . D 2 HOH 18 137 137 HOH HOH B . D 2 HOH 19 138 138 HOH HOH B . D 2 HOH 20 141 141 HOH HOH B . D 2 HOH 21 142 142 HOH HOH B . D 2 HOH 22 145 145 HOH HOH B . D 2 HOH 23 146 146 HOH HOH B . D 2 HOH 24 147 147 HOH HOH B . D 2 HOH 25 148 148 HOH HOH B . D 2 HOH 26 149 149 HOH HOH B . D 2 HOH 27 150 150 HOH HOH B . D 2 HOH 28 152 152 HOH HOH B . D 2 HOH 29 153 153 HOH HOH B . D 2 HOH 30 157 157 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-07-24 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELX 'model building' . ? 1 SHELXL-97 refinement . ? 2 MAR345 'data collection' . ? 3 XDS 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N3 A DT 3 ? ? C2 A DT 3 ? ? O2 A DT 3 ? ? 128.22 122.30 5.92 0.60 N 2 1 C2 A DA 4 ? ? N3 A DA 4 ? ? C4 A DA 4 ? ? 107.13 110.60 -3.47 0.50 N 3 1 C6 A DC 7 ? ? N1 A DC 7 ? ? C2 A DC 7 ? ? 125.17 120.30 4.87 0.40 N 4 1 C2 A DC 7 ? ? N3 A DC 7 ? ? C4 A DC 7 ? ? 114.77 119.90 -5.13 0.50 N 5 1 N3 A DC 7 ? ? C4 A DC 7 ? ? C5 A DC 7 ? ? 127.12 121.90 5.22 0.40 N 6 1 C5 A DC 7 ? ? C6 A DC 7 ? ? N1 A DC 7 ? ? 116.98 121.00 -4.02 0.50 N 7 1 N3 A DC 7 ? ? C4 A DC 7 ? ? N4 A DC 7 ? ? 113.39 118.00 -4.61 0.70 N 8 1 C6 A DC 8 ? ? N1 A DC 8 ? ? C2 A DC 8 ? ? 123.17 120.30 2.87 0.40 N 9 1 N3 A DC 8 ? ? C4 A DC 8 ? ? C5 A DC 8 ? ? 124.39 121.90 2.49 0.40 N 10 1 "O4'" B DG 1 ? ? "C1'" B DG 1 ? ? N9 B DG 1 ? ? 110.68 108.30 2.38 0.30 N 11 1 C2 B DG 1 ? ? N3 B DG 1 ? ? C4 B DG 1 ? ? 108.23 111.90 -3.67 0.50 N 12 1 N3 B DG 1 ? ? C4 B DG 1 ? ? C5 B DG 1 ? ? 131.61 128.60 3.01 0.50 N 13 1 C5 B DG 1 ? ? C6 B DG 1 ? ? N1 B DG 1 ? ? 108.20 111.50 -3.30 0.50 N 14 1 N1 B DG 2 ? ? C6 B DG 2 ? ? O6 B DG 2 ? ? 116.18 119.90 -3.72 0.60 N 15 1 C5 B DG 2 ? ? C6 B DG 2 ? ? O6 B DG 2 ? ? 132.37 128.60 3.77 0.60 N 16 1 N1 B DA 4 ? ? C2 B DA 4 ? ? N3 B DA 4 ? ? 125.58 129.30 -3.72 0.50 N 17 1 C8 B DA 4 ? ? N9 B DA 4 ? ? C4 B DA 4 ? ? 109.19 105.80 3.39 0.40 N 18 1 N3 B DT 5 ? ? C2 B DT 5 ? ? O2 B DT 5 ? ? 126.69 122.30 4.39 0.60 N 19 1 "O4'" B DC 7 ? ? "C4'" B DC 7 ? ? "C3'" B DC 7 ? ? 101.48 104.50 -3.02 0.40 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 2PKV _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 8 1_555 -0.261 -0.085 -0.217 -8.178 -4.803 -2.018 1 A_DG1:DC8_B A 1 ? B 8 ? 19 1 1 A DG 2 1_555 B DC 7 1_555 -0.250 -0.148 -0.203 -13.328 -11.887 -0.672 2 A_DG2:DC7_B A 2 ? B 7 ? 19 1 1 A DT 3 1_555 B DA 6 1_555 -0.152 -0.124 0.049 -6.431 -9.543 -3.429 3 A_DT3:DA6_B A 3 ? B 6 ? 20 1 1 A DA 4 1_555 B DT 5 1_555 0.133 -0.138 0.086 -2.000 -11.439 0.274 4 A_DA4:DT5_B A 4 ? B 5 ? 20 1 1 A DT 5 1_555 B DA 4 1_555 -0.090 -0.027 0.072 8.207 -12.726 3.875 5 A_DT5:DA4_B A 5 ? B 4 ? 20 1 1 A DA 6 1_555 B DT 3 1_555 0.000 -0.151 -0.099 6.921 -13.544 1.309 6 A_DA6:DT3_B A 6 ? B 3 ? 20 1 1 A DC 7 1_555 B DG 2 1_555 0.302 -0.080 -0.070 7.991 -12.399 3.504 7 A_DC7:DG2_B A 7 ? B 2 ? 19 1 1 A DC 8 1_555 B DG 1 1_555 0.324 -0.095 -0.125 8.944 -0.878 0.042 8 A_DC8:DG1_B A 8 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 8 1_555 A DG 2 1_555 B DC 7 1_555 0.091 -1.865 3.514 -0.138 7.212 32.993 -4.400 -0.179 3.049 12.513 0.239 33.751 1 AA_DG1DG2:DC7DC8_BB A 1 ? B 8 ? A 2 ? B 7 ? 1 A DG 2 1_555 B DC 7 1_555 A DT 3 1_555 B DA 6 1_555 -0.588 -1.361 3.214 -0.576 1.324 32.378 -2.666 0.954 3.167 2.373 1.033 32.409 2 AA_DG2DT3:DA6DC7_BB A 2 ? B 7 ? A 3 ? B 6 ? 1 A DT 3 1_555 B DA 6 1_555 A DA 4 1_555 B DT 5 1_555 0.344 -1.199 3.229 0.048 9.898 30.214 -3.883 -0.620 2.711 18.378 -0.089 31.758 3 AA_DT3DA4:DT5DA6_BB A 3 ? B 6 ? A 4 ? B 5 ? 1 A DA 4 1_555 B DT 5 1_555 A DT 5 1_555 B DA 4 1_555 0.445 -1.140 3.171 0.002 5.041 30.653 -3.041 -0.830 2.950 9.456 -0.003 31.055 4 AA_DA4DT5:DA4DT5_BB A 4 ? B 5 ? A 5 ? B 4 ? 1 A DT 5 1_555 B DA 4 1_555 A DA 6 1_555 B DT 3 1_555 -0.497 -1.317 3.293 0.380 11.919 30.740 -4.225 0.937 2.610 21.496 -0.686 32.920 5 AA_DT5DA6:DT3DA4_BB A 5 ? B 4 ? A 6 ? B 3 ? 1 A DA 6 1_555 B DT 3 1_555 A DC 7 1_555 B DG 2 1_555 0.628 -1.379 3.314 -0.399 5.489 32.975 -3.287 -1.156 3.044 9.586 0.698 33.418 6 AA_DA6DC7:DG2DT3_BB A 6 ? B 3 ? A 7 ? B 2 ? 1 A DC 7 1_555 B DG 2 1_555 A DC 8 1_555 B DG 1 1_555 -0.326 -1.807 3.353 -0.196 9.432 31.140 -4.792 0.551 2.706 17.085 0.354 32.503 7 AA_DC7DC8:DG1DG2_BB A 7 ? B 2 ? A 8 ? B 1 ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 115D _pdbx_initial_refinement_model.details '115D FROM PDB' #