data_376D # _entry.id 376D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 376D pdb_0000376d 10.2210/pdb376d/pdb RCSB UDIB70 ? ? WWPDB D_1000178844 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-10-26 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-21 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_site 6 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 376D _pdbx_database_status.recvd_initial_deposition_date 1998-01-22 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cruse, W.B.T.' 1 'Shepard, W.' 2 'Prange, T.' 3 'delalFortelle, E.' 4 'Fourme, R.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'A zipper-like duplex in DNA: the crystal structure of d(GCGAAAGCT) at 2.1 A resolution.' Structure 6 849 861 1998 STRUE6 UK 0969-2126 2005 ? 9687367 '10.1016/S0969-2126(98)00087-2' 1 'RNA Tertiary Structure Mediation by Adenosine Platforms' Science 273 1696 1699 1997 SCIEAS US 0036-8075 0038 ? ? ? 2 'Solution Structure of a Metal-binding Site in the Major Groove of RNA Complexed with Cobalt(III) Hexammine' Structure 5 713 721 1997 STRUE6 UK 0969-2126 2005 ? ? ? 3 'Extraordinary Stable Structure of Short Single-Stranded DNA Fragments Containing a Specific Base Sequence: d(GCGAAAGC)' 'Nucleic Acids Res.' 17 2223 2231 1989 NARHAD UK 0305-1048 0389 ? ? ? 4 'Structural Basis for Stabilisation of Z-DNA by Cobalt Haxaammine and Magnesium Cations' Biochemistry 24 237 240 1985 BICHAW US 0006-2960 0033 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shepard, W.' 1 ? primary 'Cruse, W.B.' 2 ? primary 'Fourme, R.' 3 ? primary 'de la Fortelle, E.' 4 ? primary 'Prange, T.' 5 ? 1 'Cate, J.H.' 6 ? 1 'Gooding, A.R.' 7 ? 1 'Podell, E.' 8 ? 1 'Zhou, K.' 9 ? 1 'Golden, B.L.' 10 ? 1 'Szewczak, A.A.' 11 ? 1 'Kundrot, C.E.' 12 ? 1 'Cech, T.R.' 13 ? 1 'Doudna, J.A.' 14 ? 2 'Kieft, J.S.' 15 ? 2 'Tinoco Jr., I.' 16 ? 3 'Hirao, I.' 17 ? 3 'Nichimura, Y.' 18 ? 3 'Naraoka, T.' 19 ? 3 'Watanabe, K.' 20 ? 3 'Arata, Y.' 21 ? 3 'Miura, K.' 22 ? 4 'Geissner, R.V.' 23 ? 4 'Quigley, G.J.' 24 ? 4 'Wang, H.J.' 25 ? 4 'van der Marel, A.' 26 ? 4 'van Boom, J.H.' 27 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;DNA (5'-D(*GP*(CBR)P*GP*AP*AP*AP*GP*CP*T)-3') ; 2843.733 1 ? ? ? ? 2 non-polymer syn 'COBALT HEXAMMINE(III)' 161.116 1 ? ? ? ? 3 water nat water 18.015 18 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(CBR)(DG)(DA)(DA)(DA)(DG)(DC)(DT)' _entity_poly.pdbx_seq_one_letter_code_can GCGAAAGCT _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'COBALT HEXAMMINE(III)' NCO 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 CBR n 1 3 DG n 1 4 DA n 1 5 DA n 1 6 DA n 1 7 DG n 1 8 DC n 1 9 DT n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CBR 'DNA linking' n "5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 Br N3 O7 P' 386.093 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 NCO non-polymer . 'COBALT HEXAMMINE(III)' ? 'Co H18 N6 3' 161.116 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 CBR 2 2 2 CBR BRO A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DG 7 7 7 DG G A . n A 1 8 DC 8 8 8 DC C A . n A 1 9 DT 9 9 9 DT T A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NCO 1 10 10 NCO NCO A . C 3 HOH 1 11 11 HOH HOH A . C 3 HOH 2 12 12 HOH HOH A . C 3 HOH 3 13 13 HOH HOH A . C 3 HOH 4 14 14 HOH HOH A . C 3 HOH 5 15 15 HOH HOH A . C 3 HOH 6 16 16 HOH HOH A . C 3 HOH 7 17 17 HOH HOH A . C 3 HOH 8 18 18 HOH HOH A . C 3 HOH 9 19 19 HOH HOH A . C 3 HOH 10 20 20 HOH HOH A . C 3 HOH 11 21 21 HOH HOH A . C 3 HOH 12 22 22 HOH HOH A . C 3 HOH 13 23 23 HOH HOH A . C 3 HOH 14 24 24 HOH HOH A . C 3 HOH 15 25 25 HOH HOH A . C 3 HOH 16 26 26 HOH HOH A . C 3 HOH 17 27 27 HOH HOH A . C 3 HOH 18 28 28 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A NCO 10 ? N3 ? B NCO 1 N3 2 1 N 1 A NCO 10 ? N4 ? B NCO 1 N4 3 1 N 1 A NCO 10 ? N5 ? B NCO 1 N5 4 1 N 1 A NCO 10 ? N6 ? B NCO 1 N6 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MADLSQ 'model building' '+ CCP4 PACKAGE' ? 1 X-PLOR refinement . ? 2 MOSFLM 'data reduction' . ? 3 CCP4 'data scaling' '(SCALA)' ? 4 MADLSQ phasing . ? 5 CCP4 phasing . ? 6 # _cell.entry_id 376D _cell.length_a 37.560 _cell.length_b 37.560 _cell.length_c 65.390 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 376D _symmetry.space_group_name_H-M 'P 63 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting hexagonal _symmetry.Int_Tables_number 182 # _exptl.entry_id 376D _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 3 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.30 _exptl_crystal.density_percent_sol 36.0000 _exptl_crystal.description ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 CACODYLATE ? ? ? 1 3 1 '[CO(NH3)6]3+' ? ? ? 1 4 1 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 276.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1996-09-01 _diffrn_detector.details 'DOUBLE MONO + MULTILAYER FOCUS' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(III)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'LURE BEAMLINE DW21B' _diffrn_source.pdbx_synchrotron_site LURE _diffrn_source.pdbx_synchrotron_beamline DW21B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 376D _reflns.observed_criterion_sigma_I 3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 15.000 _reflns.d_resolution_high 2.100 _reflns.number_obs 1832 _reflns.number_all ? _reflns.percent_possible_obs 95.000 _reflns.pdbx_Rmerge_I_obs 0.053 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.3000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.100 _reflns_shell.d_res_low ? _reflns_shell.percent_possible_all 61.00 _reflns_shell.Rmerge_I_obs 0.148 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 4.200 _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 376D _refine.ls_number_reflns_obs 1832 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 15.000 _refine.ls_d_res_high 2.100 _refine.ls_percent_reflns_obs 95.000 _refine.ls_R_factor_obs 0.189 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.189 _refine.ls_R_factor_R_free 0.241 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.000 _refine.ls_number_reflns_R_free 183 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'MANUALLY BUILT IN THE EXPERIMENTAL DENSITY' _refine.pdbx_method_to_determine_struct 'MAD AT BROMINE EDGE' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 376D _refine_analyze.Luzzati_coordinate_error_obs 0.15 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs 15.0 _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 184 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 18 _refine_hist.number_atoms_total 206 _refine_hist.d_res_high 2.100 _refine_hist.d_res_low 15.000 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.012 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d 0.023 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 2.30 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 376D _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 376D _struct.title 'A ZIPPER-LIKE DNA DUPLEX D(GCGAAAGCT)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 376D _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, OVERHANGING BASE, MODIFIED, MISMATCHED, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 376D _struct_ref.pdbx_db_accession 376D _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 376D _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 9 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 376D _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 9 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 9 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/2 0.5000000000 -0.8660254038 0.0000000000 18.7800000000 -0.8660254038 -0.5000000000 0.0000000000 32.5279141661 0.0000000000 0.0000000000 -1.0000000000 32.6950000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 1 "O3'" ? ? ? 1_555 A CBR 2 P ? ? A DG 1 A CBR 2 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale2 covale both ? A CBR 2 "O3'" ? ? ? 1_555 A DG 3 P ? ? A CBR 2 A DG 3 1_555 ? ? ? ? ? ? ? 1.612 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A CBR 2 N3 ? ? ? 1_555 A DG 7 N1 ? ? A CBR 2 A DG 7 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A CBR 2 N4 ? ? ? 1_555 A DG 7 O6 ? ? A CBR 2 A DG 7 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A CBR 2 O2 ? ? ? 1_555 A DG 7 N2 ? ? A CBR 2 A DG 7 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DA 6 N7 ? ? A DG 3 A DA 6 8_665 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog8 hydrog ? ? A DG 3 N3 ? ? ? 1_555 A DA 6 N6 ? ? A DG 3 A DA 6 8_665 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog9 hydrog ? ? A DA 6 N6 ? ? ? 1_555 A DG 3 N3 ? ? A DA 6 A DG 3 8_665 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog10 hydrog ? ? A DA 6 N7 ? ? ? 1_555 A DG 3 N2 ? ? A DA 6 A DG 3 8_665 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog11 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A CBR 2 N3 ? ? A DG 7 A CBR 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A CBR 2 O2 ? ? A DG 7 A CBR 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A CBR 2 N4 ? ? A DG 7 A CBR 2 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 8_665 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id NCO _struct_site.pdbx_auth_seq_id 10 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 5 _struct_site.details 'BINDING SITE FOR RESIDUE NCO A 10' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 CBR A 2 ? CBR A 2 . ? 2_655 ? 2 AC1 5 DG A 3 ? DG A 3 . ? 1_555 ? 3 AC1 5 DG A 3 ? DG A 3 . ? 2_655 ? 4 AC1 5 HOH C . ? HOH A 14 . ? 1_555 ? 5 AC1 5 HOH C . ? HOH A 23 . ? 2_655 ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C4 _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 DT _pdbx_validate_rmsd_bond.auth_seq_id_1 9 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 O4 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 DT _pdbx_validate_rmsd_bond.auth_seq_id_2 9 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.336 _pdbx_validate_rmsd_bond.bond_target_value 1.228 _pdbx_validate_rmsd_bond.bond_deviation 0.108 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.009 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.98 108.30 3.68 0.30 N 2 1 C6 A DG 1 ? ? N1 A DG 1 ? ? C2 A DG 1 ? ? 120.87 125.10 -4.23 0.60 N 3 1 N1 A DG 1 ? ? C2 A DG 1 ? ? N3 A DG 1 ? ? 127.96 123.90 4.06 0.60 N 4 1 N9 A DG 1 ? ? C4 A DG 1 ? ? C5 A DG 1 ? ? 108.00 105.40 2.60 0.40 N 5 1 N1 A DG 1 ? ? C6 A DG 1 ? ? O6 A DG 1 ? ? 115.17 119.90 -4.73 0.60 N 6 1 "C3'" A DG 1 ? ? "O3'" A DG 1 ? ? P A CBR 2 ? ? 129.62 119.70 9.92 1.20 Y 7 1 "C3'" A DG 3 ? ? "C2'" A DG 3 ? ? "C1'" A DG 3 ? ? 94.57 102.40 -7.83 0.80 N 8 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 117.13 108.30 8.83 0.30 N 9 1 C5 A DG 3 ? ? C6 A DG 3 ? ? O6 A DG 3 ? ? 123.63 128.60 -4.97 0.60 N 10 1 N1 A DA 4 ? ? C2 A DA 4 ? ? N3 A DA 4 ? ? 125.57 129.30 -3.73 0.50 N 11 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 111.53 108.30 3.23 0.30 N 12 1 N1 A DA 5 ? ? C2 A DA 5 ? ? N3 A DA 5 ? ? 126.18 129.30 -3.12 0.50 N 13 1 N1 A DA 6 ? ? C2 A DA 6 ? ? N3 A DA 6 ? ? 124.93 129.30 -4.37 0.50 N 14 1 "O4'" A DG 7 ? ? "C1'" A DG 7 ? ? N9 A DG 7 ? ? 110.73 108.30 2.43 0.30 N 15 1 "O4'" A DC 8 ? ? "C1'" A DC 8 ? ? N1 A DC 8 ? ? 114.03 108.30 5.73 0.30 N 16 1 "O4'" A DT 9 ? ? "C1'" A DT 9 ? ? N1 A DT 9 ? ? 111.85 108.30 3.55 0.30 N 17 1 C2 A DT 9 ? ? N3 A DT 9 ? ? C4 A DT 9 ? ? 122.24 127.20 -4.96 0.60 N 18 1 N3 A DT 9 ? ? C4 A DT 9 ? ? C5 A DT 9 ? ? 119.59 115.20 4.39 0.60 N # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id CBR _pdbx_struct_mod_residue.label_seq_id 2 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id CBR _pdbx_struct_mod_residue.auth_seq_id 2 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DC _pdbx_struct_mod_residue.details ? # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id NCO _pdbx_struct_special_symmetry.auth_seq_id 10 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id NCO _pdbx_struct_special_symmetry.label_seq_id . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CBR BR BR N N 1 CBR P P N N 2 CBR OP1 O N N 3 CBR OP2 O N N 4 CBR "O5'" O N N 5 CBR N1 N N N 6 CBR C6 C N N 7 CBR C2 C N N 8 CBR O2 O N N 9 CBR N3 N N N 10 CBR C4 C N N 11 CBR N4 N N N 12 CBR C5 C N N 13 CBR "C2'" C N N 14 CBR "C5'" C N N 15 CBR "C4'" C N R 16 CBR "O4'" O N N 17 CBR "C1'" C N R 18 CBR "C3'" C N S 19 CBR "O3'" O N N 20 CBR OP3 O N N 21 CBR HOP2 H N N 22 CBR H6 H N N 23 CBR H41 H N N 24 CBR H42 H N N 25 CBR "H2'" H N N 26 CBR "H2''" H N N 27 CBR "H5'" H N N 28 CBR "H5''" H N N 29 CBR "H4'" H N N 30 CBR "H1'" H N N 31 CBR "H3'" H N N 32 CBR "HO3'" H N N 33 CBR HOP3 H N N 34 DA OP3 O N N 35 DA P P N N 36 DA OP1 O N N 37 DA OP2 O N N 38 DA "O5'" O N N 39 DA "C5'" C N N 40 DA "C4'" C N R 41 DA "O4'" O N N 42 DA "C3'" C N S 43 DA "O3'" O N N 44 DA "C2'" C N N 45 DA "C1'" C N R 46 DA N9 N Y N 47 DA C8 C Y N 48 DA N7 N Y N 49 DA C5 C Y N 50 DA C6 C Y N 51 DA N6 N N N 52 DA N1 N Y N 53 DA C2 C Y N 54 DA N3 N Y N 55 DA C4 C Y N 56 DA HOP3 H N N 57 DA HOP2 H N N 58 DA "H5'" H N N 59 DA "H5''" H N N 60 DA "H4'" H N N 61 DA "H3'" H N N 62 DA "HO3'" H N N 63 DA "H2'" H N N 64 DA "H2''" H N N 65 DA "H1'" H N N 66 DA H8 H N N 67 DA H61 H N N 68 DA H62 H N N 69 DA H2 H N N 70 DC OP3 O N N 71 DC P P N N 72 DC OP1 O N N 73 DC OP2 O N N 74 DC "O5'" O N N 75 DC "C5'" C N N 76 DC "C4'" C N R 77 DC "O4'" O N N 78 DC "C3'" C N S 79 DC "O3'" O N N 80 DC "C2'" C N N 81 DC "C1'" C N R 82 DC N1 N N N 83 DC C2 C N N 84 DC O2 O N N 85 DC N3 N N N 86 DC C4 C N N 87 DC N4 N N N 88 DC C5 C N N 89 DC C6 C N N 90 DC HOP3 H N N 91 DC HOP2 H N N 92 DC "H5'" H N N 93 DC "H5''" H N N 94 DC "H4'" H N N 95 DC "H3'" H N N 96 DC "HO3'" H N N 97 DC "H2'" H N N 98 DC "H2''" H N N 99 DC "H1'" H N N 100 DC H41 H N N 101 DC H42 H N N 102 DC H5 H N N 103 DC H6 H N N 104 DG OP3 O N N 105 DG P P N N 106 DG OP1 O N N 107 DG OP2 O N N 108 DG "O5'" O N N 109 DG "C5'" C N N 110 DG "C4'" C N R 111 DG "O4'" O N N 112 DG "C3'" C N S 113 DG "O3'" O N N 114 DG "C2'" C N N 115 DG "C1'" C N R 116 DG N9 N Y N 117 DG C8 C Y N 118 DG N7 N Y N 119 DG C5 C Y N 120 DG C6 C N N 121 DG O6 O N N 122 DG N1 N N N 123 DG C2 C N N 124 DG N2 N N N 125 DG N3 N N N 126 DG C4 C Y N 127 DG HOP3 H N N 128 DG HOP2 H N N 129 DG "H5'" H N N 130 DG "H5''" H N N 131 DG "H4'" H N N 132 DG "H3'" H N N 133 DG "HO3'" H N N 134 DG "H2'" H N N 135 DG "H2''" H N N 136 DG "H1'" H N N 137 DG H8 H N N 138 DG H1 H N N 139 DG H21 H N N 140 DG H22 H N N 141 DT OP3 O N N 142 DT P P N N 143 DT OP1 O N N 144 DT OP2 O N N 145 DT "O5'" O N N 146 DT "C5'" C N N 147 DT "C4'" C N R 148 DT "O4'" O N N 149 DT "C3'" C N S 150 DT "O3'" O N N 151 DT "C2'" C N N 152 DT "C1'" C N R 153 DT N1 N N N 154 DT C2 C N N 155 DT O2 O N N 156 DT N3 N N N 157 DT C4 C N N 158 DT O4 O N N 159 DT C5 C N N 160 DT C7 C N N 161 DT C6 C N N 162 DT HOP3 H N N 163 DT HOP2 H N N 164 DT "H5'" H N N 165 DT "H5''" H N N 166 DT "H4'" H N N 167 DT "H3'" H N N 168 DT "HO3'" H N N 169 DT "H2'" H N N 170 DT "H2''" H N N 171 DT "H1'" H N N 172 DT H3 H N N 173 DT H71 H N N 174 DT H72 H N N 175 DT H73 H N N 176 DT H6 H N N 177 HOH O O N N 178 HOH H1 H N N 179 HOH H2 H N N 180 NCO CO CO N N 181 NCO N1 N N N 182 NCO N2 N N N 183 NCO N3 N N N 184 NCO N4 N N N 185 NCO N5 N N N 186 NCO N6 N N N 187 NCO HN11 H N N 188 NCO HN12 H N N 189 NCO HN13 H N N 190 NCO HN21 H N N 191 NCO HN22 H N N 192 NCO HN23 H N N 193 NCO HN31 H N N 194 NCO HN32 H N N 195 NCO HN33 H N N 196 NCO HN41 H N N 197 NCO HN42 H N N 198 NCO HN43 H N N 199 NCO HN51 H N N 200 NCO HN52 H N N 201 NCO HN53 H N N 202 NCO HN61 H N N 203 NCO HN62 H N N 204 NCO HN63 H N N 205 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CBR BR C5 sing N N 1 CBR P OP1 doub N N 2 CBR P OP2 sing N N 3 CBR P "O5'" sing N N 4 CBR P OP3 sing N N 5 CBR OP2 HOP2 sing N N 6 CBR "O5'" "C5'" sing N N 7 CBR N1 C6 sing N N 8 CBR N1 C2 sing N N 9 CBR N1 "C1'" sing N N 10 CBR C6 C5 doub N N 11 CBR C6 H6 sing N N 12 CBR C2 O2 doub N N 13 CBR C2 N3 sing N N 14 CBR N3 C4 doub N N 15 CBR C4 N4 sing N N 16 CBR C4 C5 sing N N 17 CBR N4 H41 sing N N 18 CBR N4 H42 sing N N 19 CBR "C2'" "C1'" sing N N 20 CBR "C2'" "C3'" sing N N 21 CBR "C2'" "H2'" sing N N 22 CBR "C2'" "H2''" sing N N 23 CBR "C5'" "C4'" sing N N 24 CBR "C5'" "H5'" sing N N 25 CBR "C5'" "H5''" sing N N 26 CBR "C4'" "O4'" sing N N 27 CBR "C4'" "C3'" sing N N 28 CBR "C4'" "H4'" sing N N 29 CBR "O4'" "C1'" sing N N 30 CBR "C1'" "H1'" sing N N 31 CBR "C3'" "O3'" sing N N 32 CBR "C3'" "H3'" sing N N 33 CBR "O3'" "HO3'" sing N N 34 CBR OP3 HOP3 sing N N 35 DA OP3 P sing N N 36 DA OP3 HOP3 sing N N 37 DA P OP1 doub N N 38 DA P OP2 sing N N 39 DA P "O5'" sing N N 40 DA OP2 HOP2 sing N N 41 DA "O5'" "C5'" sing N N 42 DA "C5'" "C4'" sing N N 43 DA "C5'" "H5'" sing N N 44 DA "C5'" "H5''" sing N N 45 DA "C4'" "O4'" sing N N 46 DA "C4'" "C3'" sing N N 47 DA "C4'" "H4'" sing N N 48 DA "O4'" "C1'" sing N N 49 DA "C3'" "O3'" sing N N 50 DA "C3'" "C2'" sing N N 51 DA "C3'" "H3'" sing N N 52 DA "O3'" "HO3'" sing N N 53 DA "C2'" "C1'" sing N N 54 DA "C2'" "H2'" sing N N 55 DA "C2'" "H2''" sing N N 56 DA "C1'" N9 sing N N 57 DA "C1'" "H1'" sing N N 58 DA N9 C8 sing Y N 59 DA N9 C4 sing Y N 60 DA C8 N7 doub Y N 61 DA C8 H8 sing N N 62 DA N7 C5 sing Y N 63 DA C5 C6 sing Y N 64 DA C5 C4 doub Y N 65 DA C6 N6 sing N N 66 DA C6 N1 doub Y N 67 DA N6 H61 sing N N 68 DA N6 H62 sing N N 69 DA N1 C2 sing Y N 70 DA C2 N3 doub Y N 71 DA C2 H2 sing N N 72 DA N3 C4 sing Y N 73 DC OP3 P sing N N 74 DC OP3 HOP3 sing N N 75 DC P OP1 doub N N 76 DC P OP2 sing N N 77 DC P "O5'" sing N N 78 DC OP2 HOP2 sing N N 79 DC "O5'" "C5'" sing N N 80 DC "C5'" "C4'" sing N N 81 DC "C5'" "H5'" sing N N 82 DC "C5'" "H5''" sing N N 83 DC "C4'" "O4'" sing N N 84 DC "C4'" "C3'" sing N N 85 DC "C4'" "H4'" sing N N 86 DC "O4'" "C1'" sing N N 87 DC "C3'" "O3'" sing N N 88 DC "C3'" "C2'" sing N N 89 DC "C3'" "H3'" sing N N 90 DC "O3'" "HO3'" sing N N 91 DC "C2'" "C1'" sing N N 92 DC "C2'" "H2'" sing N N 93 DC "C2'" "H2''" sing N N 94 DC "C1'" N1 sing N N 95 DC "C1'" "H1'" sing N N 96 DC N1 C2 sing N N 97 DC N1 C6 sing N N 98 DC C2 O2 doub N N 99 DC C2 N3 sing N N 100 DC N3 C4 doub N N 101 DC C4 N4 sing N N 102 DC C4 C5 sing N N 103 DC N4 H41 sing N N 104 DC N4 H42 sing N N 105 DC C5 C6 doub N N 106 DC C5 H5 sing N N 107 DC C6 H6 sing N N 108 DG OP3 P sing N N 109 DG OP3 HOP3 sing N N 110 DG P OP1 doub N N 111 DG P OP2 sing N N 112 DG P "O5'" sing N N 113 DG OP2 HOP2 sing N N 114 DG "O5'" "C5'" sing N N 115 DG "C5'" "C4'" sing N N 116 DG "C5'" "H5'" sing N N 117 DG "C5'" "H5''" sing N N 118 DG "C4'" "O4'" sing N N 119 DG "C4'" "C3'" sing N N 120 DG "C4'" "H4'" sing N N 121 DG "O4'" "C1'" sing N N 122 DG "C3'" "O3'" sing N N 123 DG "C3'" "C2'" sing N N 124 DG "C3'" "H3'" sing N N 125 DG "O3'" "HO3'" sing N N 126 DG "C2'" "C1'" sing N N 127 DG "C2'" "H2'" sing N N 128 DG "C2'" "H2''" sing N N 129 DG "C1'" N9 sing N N 130 DG "C1'" "H1'" sing N N 131 DG N9 C8 sing Y N 132 DG N9 C4 sing Y N 133 DG C8 N7 doub Y N 134 DG C8 H8 sing N N 135 DG N7 C5 sing Y N 136 DG C5 C6 sing N N 137 DG C5 C4 doub Y N 138 DG C6 O6 doub N N 139 DG C6 N1 sing N N 140 DG N1 C2 sing N N 141 DG N1 H1 sing N N 142 DG C2 N2 sing N N 143 DG C2 N3 doub N N 144 DG N2 H21 sing N N 145 DG N2 H22 sing N N 146 DG N3 C4 sing N N 147 DT OP3 P sing N N 148 DT OP3 HOP3 sing N N 149 DT P OP1 doub N N 150 DT P OP2 sing N N 151 DT P "O5'" sing N N 152 DT OP2 HOP2 sing N N 153 DT "O5'" "C5'" sing N N 154 DT "C5'" "C4'" sing N N 155 DT "C5'" "H5'" sing N N 156 DT "C5'" "H5''" sing N N 157 DT "C4'" "O4'" sing N N 158 DT "C4'" "C3'" sing N N 159 DT "C4'" "H4'" sing N N 160 DT "O4'" "C1'" sing N N 161 DT "C3'" "O3'" sing N N 162 DT "C3'" "C2'" sing N N 163 DT "C3'" "H3'" sing N N 164 DT "O3'" "HO3'" sing N N 165 DT "C2'" "C1'" sing N N 166 DT "C2'" "H2'" sing N N 167 DT "C2'" "H2''" sing N N 168 DT "C1'" N1 sing N N 169 DT "C1'" "H1'" sing N N 170 DT N1 C2 sing N N 171 DT N1 C6 sing N N 172 DT C2 O2 doub N N 173 DT C2 N3 sing N N 174 DT N3 C4 sing N N 175 DT N3 H3 sing N N 176 DT C4 O4 doub N N 177 DT C4 C5 sing N N 178 DT C5 C7 sing N N 179 DT C5 C6 doub N N 180 DT C7 H71 sing N N 181 DT C7 H72 sing N N 182 DT C7 H73 sing N N 183 DT C6 H6 sing N N 184 HOH O H1 sing N N 185 HOH O H2 sing N N 186 NCO CO N1 sing N N 187 NCO CO N2 sing N N 188 NCO CO N3 sing N N 189 NCO CO N4 sing N N 190 NCO CO N5 sing N N 191 NCO CO N6 sing N N 192 NCO N1 HN11 sing N N 193 NCO N1 HN12 sing N N 194 NCO N1 HN13 sing N N 195 NCO N2 HN21 sing N N 196 NCO N2 HN22 sing N N 197 NCO N2 HN23 sing N N 198 NCO N3 HN31 sing N N 199 NCO N3 HN32 sing N N 200 NCO N3 HN33 sing N N 201 NCO N4 HN41 sing N N 202 NCO N4 HN42 sing N N 203 NCO N4 HN43 sing N N 204 NCO N5 HN51 sing N N 205 NCO N5 HN52 sing N N 206 NCO N5 HN53 sing N N 207 NCO N6 HN61 sing N N 208 NCO N6 HN62 sing N N 209 NCO N6 HN63 sing N N 210 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 376D 'b-form double helix' 376D 'mismatched base pair' 376D 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 8 8_665 -0.647 -0.153 -0.222 -1.257 6.292 1.074 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1 1 A CBR 2 1_555 A DG 7 8_665 0.219 -0.072 -0.208 9.376 8.175 -1.394 2 A_CBR2:DG7_A A 2 ? A 7 ? 19 1 1 A DG 3 1_555 A DA 6 8_665 6.327 -4.151 1.417 25.035 -14.740 9.917 3 A_DG3:DA6_A A 3 ? A 6 ? 11 9 1 A DG 1 1_555 A DC 8 1_555 -0.647 -0.153 -0.222 -1.257 6.292 1.074 4 A_DG1:DC8_A A 1 ? A 8 ? 19 1 1 A CBR 2 1_555 A DG 7 1_555 0.219 -0.072 -0.208 9.376 8.175 -1.394 5 A_CBR2:DG7_A A 2 ? A 7 ? 19 1 1 A DG 3 1_555 A DA 6 1_555 6.327 -4.151 1.417 25.035 -14.740 9.917 6 A_DG3:DA6_A A 3 ? A 6 ? 11 9 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 8 8_665 A CBR 2 1_555 A DG 7 8_665 0.234 0.042 3.177 -1.360 0.946 31.025 -0.097 -0.690 3.164 1.767 2.540 31.068 1 AA_DG1CBR2:DG7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ? 1 A CBR 2 1_555 A DG 7 8_665 A DG 3 1_555 A DA 6 8_665 0.476 1.572 3.201 -0.143 8.626 51.562 1.206 -0.550 3.403 9.837 0.163 52.230 2 AA_CBR2DG3:DA6DG7_AA A 2 ? A 7 ? A 3 ? A 6 ? 1 A DG 1 1_555 A DC 8 1_555 A CBR 2 1_555 A DG 7 1_555 0.234 0.042 3.177 -1.360 0.946 31.025 -0.097 -0.690 3.164 1.767 2.540 31.068 3 AA_DG1CBR2:DG7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ? 1 A CBR 2 1_555 A DG 7 1_555 A DG 3 1_555 A DA 6 1_555 0.476 1.572 3.201 -0.143 8.626 51.562 1.206 -0.550 3.403 9.837 0.163 52.230 4 AA_CBR2DG3:DA6DG7_AA A 2 ? A 7 ? A 3 ? A 6 ? # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type other _pdbx_initial_refinement_model.source_name ? _pdbx_initial_refinement_model.details 'MANUALLY BUILT IN THE EXPERIMENTAL DENSITY' # _atom_sites.entry_id 376D _atom_sites.fract_transf_matrix[1][1] 0.026624 _atom_sites.fract_transf_matrix[1][2] 0.015370 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030742 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015293 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C CO N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? 14.271 8.963 36.082 1.00 62.65 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? 14.602 9.590 34.812 1.00 39.76 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? 14.119 8.646 33.736 1.00 44.29 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? 12.842 9.029 33.272 1.00 29.48 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? 15.015 8.550 32.494 1.00 28.50 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? 15.135 7.198 32.067 1.00 38.66 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? 14.377 9.541 31.524 1.00 24.66 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? 12.921 9.569 31.940 1.00 19.22 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? 12.322 10.911 31.853 1.00 15.81 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? 12.865 12.162 31.942 1.00 17.92 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? 11.993 13.139 31.821 1.00 20.52 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? 10.768 12.490 31.632 1.00 17.35 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? 9.439 12.993 31.385 1.00 12.35 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? 9.001 14.142 31.317 1.00 15.07 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? 8.496 11.992 31.217 1.00 15.07 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? 8.860 10.664 31.258 1.00 10.04 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? 7.864 9.781 31.104 1.00 14.62 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? 10.074 10.153 31.456 1.00 11.56 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? 10.978 11.135 31.629 1.00 13.01 ? 1 DG A C4 1 HETATM 20 BR BR . CBR A 1 2 ? 14.475 12.479 28.883 1.00 19.56 ? 2 CBR A BR 1 HETATM 21 P P . CBR A 1 2 ? 15.812 6.601 30.744 1.00 29.71 ? 2 CBR A P 1 HETATM 22 O OP1 . CBR A 1 2 ? 16.215 5.221 31.165 1.00 26.34 ? 2 CBR A OP1 1 HETATM 23 O OP2 . CBR A 1 2 ? 16.978 7.391 30.271 1.00 25.16 ? 2 CBR A OP2 1 HETATM 24 O "O5'" . CBR A 1 2 ? 14.613 6.551 29.693 1.00 26.05 ? 2 CBR A "O5'" 1 HETATM 25 N N1 . CBR A 1 2 ? 11.674 9.529 28.208 1.00 17.68 ? 2 CBR A N1 1 HETATM 26 C C6 . CBR A 1 2 ? 12.818 10.242 28.435 1.00 17.89 ? 2 CBR A C6 1 HETATM 27 C C2 . CBR A 1 2 ? 10.449 10.183 28.058 1.00 15.22 ? 2 CBR A C2 1 HETATM 28 O O2 . CBR A 1 2 ? 9.419 9.527 27.867 1.00 13.69 ? 2 CBR A O2 1 HETATM 29 N N3 . CBR A 1 2 ? 10.426 11.547 28.156 1.00 12.44 ? 2 CBR A N3 1 HETATM 30 C C4 . CBR A 1 2 ? 11.589 12.233 28.395 1.00 10.25 ? 2 CBR A C4 1 HETATM 31 N N4 . CBR A 1 2 ? 11.433 13.565 28.435 1.00 12.22 ? 2 CBR A N4 1 HETATM 32 C C5 . CBR A 1 2 ? 12.852 11.584 28.540 1.00 15.23 ? 2 CBR A C5 1 HETATM 33 C "C2'" . CBR A 1 2 ? 12.593 7.493 27.114 1.00 38.78 ? 2 CBR A "C2'" 1 HETATM 34 C "C5'" . CBR A 1 2 ? 13.445 5.780 30.098 1.00 28.18 ? 2 CBR A "C5'" 1 HETATM 35 C "C4'" . CBR A 1 2 ? 12.362 6.123 29.101 1.00 26.15 ? 2 CBR A "C4'" 1 HETATM 36 O "O4'" . CBR A 1 2 ? 11.831 7.398 29.344 1.00 19.77 ? 2 CBR A "O4'" 1 HETATM 37 C "C1'" . CBR A 1 2 ? 11.585 8.066 28.090 1.00 25.79 ? 2 CBR A "C1'" 1 HETATM 38 C "C3'" . CBR A 1 2 ? 12.871 6.098 27.657 1.00 25.74 ? 2 CBR A "C3'" 1 HETATM 39 O "O3'" . CBR A 1 2 ? 12.253 5.027 26.945 1.00 25.19 ? 2 CBR A "O3'" 1 ATOM 40 P P . DG A 1 3 ? 12.596 4.681 25.408 1.00 30.02 ? 3 DG A P 1 ATOM 41 O OP1 . DG A 1 3 ? 12.113 3.290 25.279 1.00 35.71 ? 3 DG A OP1 1 ATOM 42 O OP2 . DG A 1 3 ? 14.064 4.836 25.165 1.00 27.51 ? 3 DG A OP2 1 ATOM 43 O "O5'" . DG A 1 3 ? 11.796 5.761 24.561 1.00 21.25 ? 3 DG A "O5'" 1 ATOM 44 C "C5'" . DG A 1 3 ? 10.357 5.865 24.632 1.00 21.24 ? 3 DG A "C5'" 1 ATOM 45 C "C4'" . DG A 1 3 ? 9.995 7.189 24.011 1.00 29.95 ? 3 DG A "C4'" 1 ATOM 46 O "O4'" . DG A 1 3 ? 10.701 8.226 24.667 1.00 18.46 ? 3 DG A "O4'" 1 ATOM 47 C "C3'" . DG A 1 3 ? 10.367 7.340 22.531 1.00 25.40 ? 3 DG A "C3'" 1 ATOM 48 O "O3'" . DG A 1 3 ? 9.475 8.237 21.872 1.00 36.38 ? 3 DG A "O3'" 1 ATOM 49 C "C2'" . DG A 1 3 ? 11.761 7.996 22.599 1.00 21.40 ? 3 DG A "C2'" 1 ATOM 50 C "C1'" . DG A 1 3 ? 11.360 9.025 23.666 1.00 13.64 ? 3 DG A "C1'" 1 ATOM 51 N N9 . DG A 1 3 ? 12.541 9.770 24.082 1.00 15.90 ? 3 DG A N9 1 ATOM 52 C C8 . DG A 1 3 ? 13.829 9.306 24.215 1.00 13.73 ? 3 DG A C8 1 ATOM 53 N N7 . DG A 1 3 ? 14.667 10.234 24.611 1.00 16.35 ? 3 DG A N7 1 ATOM 54 C C5 . DG A 1 3 ? 13.867 11.362 24.755 1.00 14.34 ? 3 DG A C5 1 ATOM 55 C C6 . DG A 1 3 ? 14.206 12.700 25.154 1.00 16.96 ? 3 DG A C6 1 ATOM 56 O O6 . DG A 1 3 ? 15.337 13.050 25.456 1.00 16.03 ? 3 DG A O6 1 ATOM 57 N N1 . DG A 1 3 ? 13.139 13.572 25.170 1.00 14.85 ? 3 DG A N1 1 ATOM 58 C C2 . DG A 1 3 ? 11.854 13.170 24.851 1.00 8.38 ? 3 DG A C2 1 ATOM 59 N N2 . DG A 1 3 ? 10.906 14.117 24.904 1.00 10.59 ? 3 DG A N2 1 ATOM 60 N N3 . DG A 1 3 ? 11.498 11.934 24.498 1.00 10.13 ? 3 DG A N3 1 ATOM 61 C C4 . DG A 1 3 ? 12.559 11.101 24.434 1.00 10.46 ? 3 DG A C4 1 ATOM 62 P P . DA A 1 4 ? 9.016 7.978 20.352 1.00 32.63 ? 4 DA A P 1 ATOM 63 O OP1 . DA A 1 4 ? 7.923 6.974 20.514 1.00 35.35 ? 4 DA A OP1 1 ATOM 64 O OP2 . DA A 1 4 ? 10.164 7.466 19.550 1.00 33.84 ? 4 DA A OP2 1 ATOM 65 O "O5'" . DA A 1 4 ? 8.487 9.398 19.872 1.00 33.33 ? 4 DA A "O5'" 1 ATOM 66 C "C5'" . DA A 1 4 ? 7.341 9.992 20.540 1.00 34.98 ? 4 DA A "C5'" 1 ATOM 67 C "C4'" . DA A 1 4 ? 7.706 11.451 20.750 1.00 28.09 ? 4 DA A "C4'" 1 ATOM 68 O "O4'" . DA A 1 4 ? 8.821 11.533 21.613 1.00 24.66 ? 4 DA A "O4'" 1 ATOM 69 C "C3'" . DA A 1 4 ? 8.160 12.162 19.480 1.00 34.84 ? 4 DA A "C3'" 1 ATOM 70 O "O3'" . DA A 1 4 ? 7.075 12.755 18.764 1.00 43.56 ? 4 DA A "O3'" 1 ATOM 71 C "C2'" . DA A 1 4 ? 9.151 13.216 19.947 1.00 28.48 ? 4 DA A "C2'" 1 ATOM 72 C "C1'" . DA A 1 4 ? 9.578 12.721 21.310 1.00 31.93 ? 4 DA A "C1'" 1 ATOM 73 N N9 . DA A 1 4 ? 11.010 12.377 21.265 1.00 12.76 ? 4 DA A N9 1 ATOM 74 C C8 . DA A 1 4 ? 11.543 11.145 20.994 1.00 17.42 ? 4 DA A C8 1 ATOM 75 N N7 . DA A 1 4 ? 12.853 11.127 21.022 1.00 13.32 ? 4 DA A N7 1 ATOM 76 C C5 . DA A 1 4 ? 13.181 12.446 21.325 1.00 15.77 ? 4 DA A C5 1 ATOM 77 C C6 . DA A 1 4 ? 14.433 13.096 21.499 1.00 11.50 ? 4 DA A C6 1 ATOM 78 N N6 . DA A 1 4 ? 15.618 12.486 21.396 1.00 12.30 ? 4 DA A N6 1 ATOM 79 N N1 . DA A 1 4 ? 14.385 14.418 21.803 1.00 14.83 ? 4 DA A N1 1 ATOM 80 C C2 . DA A 1 4 ? 13.178 15.086 21.911 1.00 10.35 ? 4 DA A C2 1 ATOM 81 N N3 . DA A 1 4 ? 11.978 14.542 21.754 1.00 15.83 ? 4 DA A N3 1 ATOM 82 C C4 . DA A 1 4 ? 12.064 13.225 21.477 1.00 9.41 ? 4 DA A C4 1 ATOM 83 P P . DA A 1 5 ? 6.724 12.253 17.274 1.00 29.12 ? 5 DA A P 1 ATOM 84 O OP1 . DA A 1 5 ? 5.318 12.725 17.143 1.00 31.15 ? 5 DA A OP1 1 ATOM 85 O OP2 . DA A 1 5 ? 6.850 10.770 17.152 1.00 33.21 ? 5 DA A OP2 1 ATOM 86 O "O5'" . DA A 1 5 ? 7.794 13.012 16.361 1.00 34.55 ? 5 DA A "O5'" 1 ATOM 87 C "C5'" . DA A 1 5 ? 7.594 14.420 16.087 1.00 30.30 ? 5 DA A "C5'" 1 ATOM 88 C "C4'" . DA A 1 5 ? 8.707 14.922 15.209 1.00 37.52 ? 5 DA A "C4'" 1 ATOM 89 O "O4'" . DA A 1 5 ? 9.935 14.263 15.446 1.00 31.38 ? 5 DA A "O4'" 1 ATOM 90 C "C3'" . DA A 1 5 ? 8.461 14.846 13.702 1.00 31.22 ? 5 DA A "C3'" 1 ATOM 91 O "O3'" . DA A 1 5 ? 8.470 16.143 13.102 1.00 37.28 ? 5 DA A "O3'" 1 ATOM 92 C "C2'" . DA A 1 5 ? 9.604 13.977 13.166 1.00 30.70 ? 5 DA A "C2'" 1 ATOM 93 C "C1'" . DA A 1 5 ? 10.682 14.282 14.199 1.00 35.84 ? 5 DA A "C1'" 1 ATOM 94 N N9 . DA A 1 5 ? 11.728 13.253 14.182 1.00 20.33 ? 5 DA A N9 1 ATOM 95 C C8 . DA A 1 5 ? 11.572 11.901 13.988 1.00 19.32 ? 5 DA A C8 1 ATOM 96 N N7 . DA A 1 5 ? 12.698 11.228 14.025 1.00 15.73 ? 5 DA A N7 1 ATOM 97 C C5 . DA A 1 5 ? 13.655 12.213 14.260 1.00 16.96 ? 5 DA A C5 1 ATOM 98 C C6 . DA A 1 5 ? 15.065 12.148 14.405 1.00 18.02 ? 5 DA A C6 1 ATOM 99 N N6 . DA A 1 5 ? 15.795 11.024 14.356 1.00 19.56 ? 5 DA A N6 1 ATOM 100 N N1 . DA A 1 5 ? 15.718 13.319 14.639 1.00 19.61 ? 5 DA A N1 1 ATOM 101 C C2 . DA A 1 5 ? 15.007 14.501 14.717 1.00 21.30 ? 5 DA A C2 1 ATOM 102 N N3 . DA A 1 5 ? 13.693 14.636 14.579 1.00 19.94 ? 5 DA A N3 1 ATOM 103 C C4 . DA A 1 5 ? 13.076 13.458 14.360 1.00 20.01 ? 5 DA A C4 1 ATOM 104 P P . DA A 1 6 ? 7.371 16.665 12.056 1.00 31.06 ? 6 DA A P 1 ATOM 105 O OP1 . DA A 1 6 ? 6.065 16.389 12.696 1.00 37.07 ? 6 DA A OP1 1 ATOM 106 O OP2 . DA A 1 6 ? 7.511 15.934 10.749 1.00 47.48 ? 6 DA A OP2 1 ATOM 107 O "O5'" . DA A 1 6 ? 7.741 18.196 11.870 1.00 33.14 ? 6 DA A "O5'" 1 ATOM 108 C "C5'" . DA A 1 6 ? 7.750 19.142 12.962 1.00 38.03 ? 6 DA A "C5'" 1 ATOM 109 C "C4'" . DA A 1 6 ? 7.748 20.501 12.295 1.00 31.24 ? 6 DA A "C4'" 1 ATOM 110 O "O4'" . DA A 1 6 ? 8.941 20.742 11.579 1.00 38.30 ? 6 DA A "O4'" 1 ATOM 111 C "C3'" . DA A 1 6 ? 6.642 20.668 11.248 1.00 29.16 ? 6 DA A "C3'" 1 ATOM 112 O "O3'" . DA A 1 6 ? 6.205 22.025 11.169 1.00 31.11 ? 6 DA A "O3'" 1 ATOM 113 C "C2'" . DA A 1 6 ? 7.330 20.195 9.954 1.00 21.62 ? 6 DA A "C2'" 1 ATOM 114 C "C1'" . DA A 1 6 ? 8.667 20.868 10.149 1.00 20.12 ? 6 DA A "C1'" 1 ATOM 115 N N9 . DA A 1 6 ? 9.740 20.138 9.453 1.00 15.61 ? 6 DA A N9 1 ATOM 116 C C8 . DA A 1 6 ? 9.816 18.861 8.994 1.00 18.18 ? 6 DA A C8 1 ATOM 117 N N7 . DA A 1 6 ? 10.970 18.580 8.424 1.00 15.80 ? 6 DA A N7 1 ATOM 118 C C5 . DA A 1 6 ? 11.673 19.774 8.496 1.00 12.42 ? 6 DA A C5 1 ATOM 119 C C6 . DA A 1 6 ? 12.982 20.166 8.106 1.00 18.17 ? 6 DA A C6 1 ATOM 120 N N6 . DA A 1 6 ? 13.863 19.399 7.448 1.00 17.38 ? 6 DA A N6 1 ATOM 121 N N1 . DA A 1 6 ? 13.340 21.462 8.349 1.00 15.62 ? 6 DA A N1 1 ATOM 122 C C2 . DA A 1 6 ? 12.470 22.336 8.977 1.00 16.39 ? 6 DA A C2 1 ATOM 123 N N3 . DA A 1 6 ? 11.242 22.027 9.384 1.00 17.10 ? 6 DA A N3 1 ATOM 124 C C4 . DA A 1 6 ? 10.931 20.741 9.135 1.00 13.37 ? 6 DA A C4 1 ATOM 125 P P . DG A 1 7 ? 4.956 22.445 10.239 1.00 34.99 ? 7 DG A P 1 ATOM 126 O OP1 . DG A 1 7 ? 4.270 23.485 11.047 1.00 32.06 ? 7 DG A OP1 1 ATOM 127 O OP2 . DG A 1 7 ? 4.078 21.277 9.951 1.00 26.70 ? 7 DG A OP2 1 ATOM 128 O "O5'" . DG A 1 7 ? 5.698 22.989 8.931 1.00 35.33 ? 7 DG A "O5'" 1 ATOM 129 C "C5'" . DG A 1 7 ? 6.646 24.063 9.109 1.00 24.57 ? 7 DG A "C5'" 1 ATOM 130 C "C4'" . DG A 1 7 ? 7.430 24.209 7.829 1.00 33.01 ? 7 DG A "C4'" 1 ATOM 131 O "O4'" . DG A 1 7 ? 8.160 23.027 7.591 1.00 30.85 ? 7 DG A "O4'" 1 ATOM 132 C "C3'" . DG A 1 7 ? 6.622 24.483 6.567 1.00 39.31 ? 7 DG A "C3'" 1 ATOM 133 O "O3'" . DG A 1 7 ? 7.187 25.563 5.809 1.00 37.51 ? 7 DG A "O3'" 1 ATOM 134 C "C2'" . DG A 1 7 ? 6.664 23.166 5.782 1.00 32.91 ? 7 DG A "C2'" 1 ATOM 135 C "C1'" . DG A 1 7 ? 8.038 22.680 6.191 1.00 31.03 ? 7 DG A "C1'" 1 ATOM 136 N N9 . DG A 1 7 ? 8.221 21.240 5.996 1.00 17.09 ? 7 DG A N9 1 ATOM 137 C C8 . DG A 1 7 ? 7.384 20.170 6.051 1.00 15.25 ? 7 DG A C8 1 ATOM 138 N N7 . DG A 1 7 ? 7.955 19.011 5.825 1.00 17.34 ? 7 DG A N7 1 ATOM 139 C C5 . DG A 1 7 ? 9.276 19.365 5.577 1.00 15.57 ? 7 DG A C5 1 ATOM 140 C C6 . DG A 1 7 ? 10.408 18.561 5.212 1.00 14.22 ? 7 DG A C6 1 ATOM 141 O O6 . DG A 1 7 ? 10.426 17.349 5.084 1.00 17.60 ? 7 DG A O6 1 ATOM 142 N N1 . DG A 1 7 ? 11.549 19.297 5.040 1.00 14.10 ? 7 DG A N1 1 ATOM 143 C C2 . DG A 1 7 ? 11.593 20.663 5.163 1.00 13.00 ? 7 DG A C2 1 ATOM 144 N N2 . DG A 1 7 ? 12.793 21.212 4.962 1.00 18.10 ? 7 DG A N2 1 ATOM 145 N N3 . DG A 1 7 ? 10.566 21.452 5.488 1.00 17.80 ? 7 DG A N3 1 ATOM 146 C C4 . DG A 1 7 ? 9.456 20.719 5.662 1.00 18.71 ? 7 DG A C4 1 ATOM 147 P P . DC A 1 8 ? 6.224 26.515 4.927 1.00 31.31 ? 8 DC A P 1 ATOM 148 O OP1 . DC A 1 8 ? 5.585 27.380 5.949 1.00 38.78 ? 8 DC A OP1 1 ATOM 149 O OP2 . DC A 1 8 ? 5.228 25.678 4.186 1.00 29.79 ? 8 DC A OP2 1 ATOM 150 O "O5'" . DC A 1 8 ? 7.245 27.259 3.961 1.00 39.66 ? 8 DC A "O5'" 1 ATOM 151 C "C5'" . DC A 1 8 ? 7.683 26.570 2.761 1.00 44.41 ? 8 DC A "C5'" 1 ATOM 152 C "C4'" . DC A 1 8 ? 9.197 26.531 2.809 1.00 44.74 ? 8 DC A "C4'" 1 ATOM 153 O "O4'" . DC A 1 8 ? 9.622 25.311 3.381 1.00 46.44 ? 8 DC A "O4'" 1 ATOM 154 C "C3'" . DC A 1 8 ? 9.851 26.594 1.431 1.00 46.39 ? 8 DC A "C3'" 1 ATOM 155 O "O3'" . DC A 1 8 ? 11.078 27.330 1.407 1.00 40.23 ? 8 DC A "O3'" 1 ATOM 156 C "C2'" . DC A 1 8 ? 10.032 25.126 1.044 1.00 49.75 ? 8 DC A "C2'" 1 ATOM 157 C "C1'" . DC A 1 8 ? 10.258 24.477 2.403 1.00 29.83 ? 8 DC A "C1'" 1 ATOM 158 N N1 . DC A 1 8 ? 9.736 23.100 2.358 1.00 20.94 ? 8 DC A N1 1 ATOM 159 C C2 . DC A 1 8 ? 10.688 22.120 2.087 1.00 15.63 ? 8 DC A C2 1 ATOM 160 O O2 . DC A 1 8 ? 11.853 22.448 1.904 1.00 14.41 ? 8 DC A O2 1 ATOM 161 N N3 . DC A 1 8 ? 10.270 20.823 2.036 1.00 19.37 ? 8 DC A N3 1 ATOM 162 C C4 . DC A 1 8 ? 8.972 20.479 2.230 1.00 16.80 ? 8 DC A C4 1 ATOM 163 N N4 . DC A 1 8 ? 8.624 19.194 2.164 1.00 13.88 ? 8 DC A N4 1 ATOM 164 C C5 . DC A 1 8 ? 8.009 21.490 2.503 1.00 15.56 ? 8 DC A C5 1 ATOM 165 C C6 . DC A 1 8 ? 8.417 22.764 2.380 1.00 17.91 ? 8 DC A C6 1 ATOM 166 P P . DT A 1 9 ? 11.138 28.815 0.780 1.00 58.00 ? 9 DT A P 1 ATOM 167 O OP1 . DT A 1 9 ? 12.393 28.799 -0.016 1.00 54.66 ? 9 DT A OP1 1 ATOM 168 O OP2 . DT A 1 9 ? 11.175 29.849 1.865 1.00 58.17 ? 9 DT A OP2 1 ATOM 169 O "O5'" . DT A 1 9 ? 9.803 28.918 -0.079 1.00 68.73 ? 9 DT A "O5'" 1 ATOM 170 C "C5'" . DT A 1 9 ? 9.316 30.213 -0.515 1.00 69.85 ? 9 DT A "C5'" 1 ATOM 171 C "C4'" . DT A 1 9 ? 8.378 30.712 0.563 1.00 73.54 ? 9 DT A "C4'" 1 ATOM 172 O "O4'" . DT A 1 9 ? 7.272 31.363 -0.022 1.00 74.12 ? 9 DT A "O4'" 1 ATOM 173 C "C3'" . DT A 1 9 ? 7.801 29.635 1.472 1.00 68.66 ? 9 DT A "C3'" 1 ATOM 174 O "O3'" . DT A 1 9 ? 7.761 30.027 2.848 1.00 68.05 ? 9 DT A "O3'" 1 ATOM 175 C "C2'" . DT A 1 9 ? 6.408 29.360 0.901 1.00 78.99 ? 9 DT A "C2'" 1 ATOM 176 C "C1'" . DT A 1 9 ? 6.037 30.726 0.354 1.00 79.50 ? 9 DT A "C1'" 1 ATOM 177 N N1 . DT A 1 9 ? 5.118 30.589 -0.793 1.00 78.10 ? 9 DT A N1 1 ATOM 178 C C2 . DT A 1 9 ? 5.581 29.973 -1.943 1.00 79.01 ? 9 DT A C2 1 ATOM 179 O O2 . DT A 1 9 ? 6.729 29.544 -2.027 1.00 73.28 ? 9 DT A O2 1 ATOM 180 N N3 . DT A 1 9 ? 4.713 29.857 -2.995 1.00 67.48 ? 9 DT A N3 1 ATOM 181 C C4 . DT A 1 9 ? 3.433 30.321 -2.936 1.00 72.96 ? 9 DT A C4 1 ATOM 182 O O4 . DT A 1 9 ? 2.637 30.176 -3.999 1.00 77.03 ? 9 DT A O4 1 ATOM 183 C C5 . DT A 1 9 ? 2.971 30.955 -1.753 1.00 61.07 ? 9 DT A C5 1 ATOM 184 C C7 . DT A 1 9 ? 1.563 31.486 -1.632 1.00 65.63 ? 9 DT A C7 1 ATOM 185 C C6 . DT A 1 9 ? 3.834 31.050 -0.732 1.00 80.29 ? 9 DT A C6 1 HETATM 186 CO CO . NCO B 2 . ? 18.780 10.843 25.743 0.33 13.07 ? 10 NCO A CO 1 HETATM 187 N N1 . NCO B 2 . ? 17.791 9.579 24.611 1.00 11.41 ? 10 NCO A N1 1 HETATM 188 N N2 . NCO B 2 . ? 19.394 9.354 26.846 1.00 12.18 ? 10 NCO A N2 1 HETATM 189 O O . HOH C 3 . ? 15.657 23.129 7.112 1.00 22.96 ? 11 HOH A O 1 HETATM 190 O O . HOH C 3 . ? 6.323 17.992 2.901 1.00 23.66 ? 12 HOH A O 1 HETATM 191 O O . HOH C 3 . ? 17.291 14.302 21.017 0.33 20.91 ? 13 HOH A O 1 HETATM 192 O O . HOH C 3 . ? 22.030 9.770 27.571 1.00 5.36 ? 14 HOH A O 1 HETATM 193 O O . HOH C 3 . ? 13.114 16.207 26.224 1.00 42.30 ? 15 HOH A O 1 HETATM 194 O O . HOH C 3 . ? 9.749 6.611 31.190 1.00 30.98 ? 16 HOH A O 1 HETATM 195 O O . HOH C 3 . ? 16.670 15.910 23.080 1.00 34.81 ? 17 HOH A O 1 HETATM 196 O O . HOH C 3 . ? 12.326 18.268 24.518 1.00 42.61 ? 18 HOH A O 1 HETATM 197 O O . HOH C 3 . ? 15.729 6.388 25.474 1.00 25.49 ? 19 HOH A O 1 HETATM 198 O O . HOH C 3 . ? 14.983 9.218 21.033 1.00 42.82 ? 20 HOH A O 1 HETATM 199 O O . HOH C 3 . ? 14.151 23.962 1.621 1.00 43.61 ? 21 HOH A O 1 HETATM 200 O O . HOH C 3 . ? 6.241 5.516 22.360 1.00 57.42 ? 22 HOH A O 1 HETATM 201 O O . HOH C 3 . ? 16.900 11.071 29.632 1.00 53.16 ? 23 HOH A O 1 HETATM 202 O O . HOH C 3 . ? 7.091 16.270 5.269 1.00 27.14 ? 24 HOH A O 1 HETATM 203 O O . HOH C 3 . ? 10.762 9.492 17.510 1.00 56.54 ? 25 HOH A O 1 HETATM 204 O O . HOH C 3 . ? 10.832 24.673 6.091 1.00 35.03 ? 26 HOH A O 1 HETATM 205 O O . HOH C 3 . ? 18.180 14.850 14.493 1.00 19.91 ? 27 HOH A O 1 HETATM 206 O O . HOH C 3 . ? 6.561 13.221 10.142 1.00 28.71 ? 28 HOH A O 1 #