data_3FA1 # _entry.id 3FA1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3FA1 pdb_00003fa1 10.2210/pdb3fa1/pdb NDB AD0073 ? ? RCSB RCSB050334 ? ? WWPDB D_1000050334 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1DNS . unspecified PDB 2GPX . unspecified # _pdbx_database_status.entry_id 3FA1 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2008-11-14 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sheng, J.' 1 'Tatsuya, M.' 2 'Hassan, A.E.' 3 'Huang, Z.' 4 # _citation.id primary _citation.title 'Crystal Structure of Tellurium Derivatized DNA' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sheng, J.' 1 ? primary 'Tatsuya, M.' 2 ? primary 'Hassan, A.E.' 3 ? primary 'Huang, Z.' 4 ? # _cell.length_a 42.695 _cell.length_b 42.695 _cell.length_c 24.213 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 3FA1 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.entry_id 3FA1 _symmetry.Int_Tables_number 96 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*DGP*(UMS)P*DGP*(TTI)P*DAP*DCP*DAP*DC)-3'" 2619.151 1 ? 'Tellurium modified deoxy-Uridine' ? 'Tellurium contained DNA' 2 water nat water 18.015 28 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(UMS)(DG)(TTI)(DA)(DC)(DA)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GUGUACAC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 UMS n 1 3 DG n 1 4 TTI n 1 5 DA n 1 6 DC n 1 7 DA n 1 8 DC n # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 3FA1 _struct_ref.pdbx_db_accession 3FA1 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3FA1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 3FA1 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 TTI 'DNA linking' n ;2'-deoxy-5-telluroxouridine 5'-(dihydrogen phosphate) ; "5-Tellurium-deoxyuridine-5'-phosphate" 'C9 H13 N2 O8 P Te' 435.782 UMS 'DNA linking' n "2'-METHYLSELENYL-2'-DEOXYURIDINE-5'-PHOSPHATE" ? 'C10 H15 N2 O8 P Se' 401.168 # _exptl.crystals_number 1 _exptl.entry_id 3FA1 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.11 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 41.61 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details 'MPD,sodium cacodylate,spermine tetra-HCl, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 MPD ? ? ? 1 2 1 'Sodium cacodylate' ? ? ? 1 3 ? 'Spermine tetra-HCl' ? ? ? 1 4 2 MPD ? ? ? 1 5 2 'Sodium cacodylate' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC Q210' _diffrn_detector.pdbx_collection_date 2008-04-12 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol SAD _diffrn_radiation.monochromator 'Si(111)' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X12C' _diffrn_source.pdbx_wavelength_list 0.9795 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X12C # _reflns.entry_id 3FA1 _reflns.d_resolution_high 1.500 _reflns.d_resolution_low 18.890 _reflns.number_obs 3659 _reflns.pdbx_scaling_rejects 239 _reflns.pdbx_Rmerge_I_obs 0.075 _reflns.pdbx_chi_squared 0.930 _reflns.pdbx_redundancy 8.630 _reflns.percent_possible_obs 94.400 _reflns.observed_criterion_sigma_F 50 _reflns.observed_criterion_sigma_I 5 _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.9 _reflns.B_iso_Wilson_estimate 19.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.50 1.55 ? 1469 ? 0.427 2.4 ? 0.420 5.30 ? 277 74.90 1 1 1.55 1.62 ? 2128 ? 0.311 3.5 ? 0.490 6.50 ? 327 85.20 2 1 1.62 1.69 ? 3022 ? 0.224 5.1 ? 0.540 8.40 ? 359 96.20 3 1 1.69 1.78 ? 3563 ? 0.176 6.6 ? 0.580 9.47 ? 376 99.20 4 1 1.78 1.89 ? 3644 ? 0.195 7.6 ? 0.700 9.49 ? 383 99.70 5 1 1.89 2.04 ? 3546 ? 0.137 9.8 ? 0.680 9.36 ? 378 98.70 6 1 2.04 2.24 ? 3583 ? 0.144 11.0 ? 0.830 9.43 ? 378 98.70 7 1 2.24 2.56 ? 3665 ? 0.111 13.2 ? 0.870 9.50 ? 384 99.20 8 1 2.56 3.23 ? 3642 ? 0.073 24.0 ? 1.250 9.28 ? 389 97.50 9 1 3.23 18.89 ? 3558 ? 0.052 54.2 ? 2.430 8.37 ? 408 93.60 10 1 # _refine.entry_id 3FA1 _refine.ls_d_res_high 1.500 _refine.ls_d_res_low 18.89 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 93.800 _refine.ls_number_reflns_obs 783 _refine.ls_R_factor_R_work 0.193 _refine.ls_R_factor_R_free 0.215 _refine.ls_percent_reflns_R_free 10.100 _refine.ls_number_reflns_R_free 691 _refine.B_iso_mean 22.409 _refine.solvent_model_param_bsol 54.275 _refine.aniso_B[1][1] -0.602 _refine.aniso_B[2][2] -0.602 _refine.aniso_B[3][3] 1.204 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.pdbx_method_to_determine_struct ? _refine.B_iso_max 47.55 _refine.B_iso_min 14.32 _refine.occupancy_max 1.00 _refine.occupancy_min 0.35 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_all 0.1947 _refine.ls_R_factor_obs 0.1947 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model 1DNS _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details Random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model restrained _refine.details 'THE BIJVOET PAIRS WERE USED IN PHASING' _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_overall_ESU_R ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 162 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 28 _refine_hist.number_atoms_total 190 _refine_hist.d_res_high 1.500 _refine_hist.d_res_low 18.89 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d ? 0.003 ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? 0.694 ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? 0.000 1.500 ? 'X-RAY DIFFRACTION' ? c_scbond_it ? 1.545 2.000 ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? 0.000 2.000 ? 'X-RAY DIFFRACTION' ? c_scangle_it ? 2.115 2.500 ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 CNS_TOPPAR:protein_rep.param CNS_TOPPAR:protein.top 'X-RAY DIFFRACTION' 2 dna-rna_rep_jia.param dna-rna_jia.top 'X-RAY DIFFRACTION' 3 CNS_TOPPAR:water_rep.param CNS_TOPPAR:water.top 'X-RAY DIFFRACTION' 4 CNS_TOPPAR:ion.param CNS_TOPPAR:ion.top 'X-RAY DIFFRACTION' # _struct.entry_id 3FA1 _struct.title 'Crystal Structure of Tellurium Derivatized DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3FA1 _struct_keywords.text 'Tellurium DNA, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 1 "O3'" ? ? ? 1_555 A UMS 2 P ? ? A DG 1 A UMS 2 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale2 covale both ? A UMS 2 "O3'" ? ? ? 1_555 A DG 3 P ? ? A UMS 2 A DG 3 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale3 covale both ? A DG 3 "O3'" ? ? ? 1_555 A TTI 4 P ? ? A DG 3 A TTI 4 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale4 covale both ? A TTI 4 "O3'" ? ? ? 1_555 A DA 5 P ? ? A TTI 4 A DA 5 1_555 ? ? ? ? ? ? ? 1.606 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A UMS 2 N3 ? ? ? 1_555 A DA 7 N1 ? ? A UMS 2 A DA 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A UMS 2 O4 ? ? ? 1_555 A DA 7 N6 ? ? A UMS 2 A DA 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 3 A DC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 3 A DC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 3 A DC 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A TTI 4 N3 ? ? ? 1_555 A DA 5 N1 ? ? A TTI 4 A DA 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A TTI 4 O4 ? ? ? 1_555 A DA 5 N6 ? ? A TTI 4 A DA 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A TTI 4 N3 ? ? A DA 5 A TTI 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A TTI 4 O4 ? ? A DA 5 A TTI 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 6 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N1 ? ? ? 1_555 A UMS 2 N3 ? ? A DA 7 A UMS 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A UMS 2 O4 ? ? A DA 7 A UMS 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _atom_sites.entry_id 3FA1 _atom_sites.fract_transf_matrix[1][1] 0.023422 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023422 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.041300 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P SE TE # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? 29.041 19.093 -5.408 1.00 20.85 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? 28.888 17.699 -5.122 1.00 21.17 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? 30.100 17.126 -4.425 1.00 19.50 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? 31.269 17.302 -5.256 1.00 18.32 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? 30.457 17.810 -3.113 1.00 19.33 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? 29.704 17.256 -2.032 1.00 20.01 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? 31.936 17.500 -2.993 1.00 17.51 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? 32.398 17.617 -4.442 1.00 17.80 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? 32.829 18.968 -4.792 1.00 17.32 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? 32.106 19.919 -5.471 1.00 18.72 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? 32.755 21.043 -5.621 1.00 18.24 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? 33.980 20.817 -5.009 1.00 17.16 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? 35.105 21.671 -4.858 1.00 17.88 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? 35.247 22.837 -5.253 1.00 20.03 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? 36.137 21.038 -4.169 1.00 18.83 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? 36.095 19.750 -3.693 1.00 21.55 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? 37.187 19.316 -3.057 1.00 22.39 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? 35.057 18.945 -3.831 1.00 19.03 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? 34.043 19.539 -4.493 1.00 17.81 ? 1 DG A C4 1 HETATM 20 P P . UMS A 1 2 ? 29.251 18.201 -0.815 1.00 20.62 ? 2 UMS A P 1 HETATM 21 O OP1 . UMS A 1 2 ? 28.398 17.402 0.101 1.00 19.55 ? 2 UMS A OP1 1 HETATM 22 O OP2 . UMS A 1 2 ? 28.730 19.464 -1.394 1.00 20.33 ? 2 UMS A OP2 1 HETATM 23 O "O5'" . UMS A 1 2 ? 30.612 18.539 -0.062 1.00 18.68 ? 2 UMS A "O5'" 1 HETATM 24 C "C5'" . UMS A 1 2 ? 31.307 17.528 0.662 1.00 20.42 ? 2 UMS A "C5'" 1 HETATM 25 C "C4'" . UMS A 1 2 ? 32.632 18.050 1.164 1.00 21.15 ? 2 UMS A "C4'" 1 HETATM 26 O "O4'" . UMS A 1 2 ? 33.484 18.384 0.032 1.00 19.67 ? 2 UMS A "O4'" 1 HETATM 27 C "C3'" . UMS A 1 2 ? 32.591 19.334 1.976 1.00 22.80 ? 2 UMS A "C3'" 1 HETATM 28 O "O3'" . UMS A 1 2 ? 32.236 19.097 3.332 1.00 24.03 ? 2 UMS A "O3'" 1 HETATM 29 C "C2'" . UMS A 1 2 ? 34.028 19.818 1.828 1.00 22.07 ? 2 UMS A "C2'" 1 HETATM 30 SE "SE2'" . UMS A 1 2 ? 35.290 18.590 2.986 1.00 28.55 ? 2 UMS A "SE2'" 1 HETATM 31 C "C1'" . UMS A 1 2 ? 34.340 19.466 0.379 1.00 21.57 ? 2 UMS A "C1'" 1 HETATM 32 C "CA'" . UMS A 1 2 ? 36.874 19.547 2.746 1.00 25.43 ? 2 UMS A "CA'" 1 HETATM 33 N N1 . UMS A 1 2 ? 34.040 20.599 -0.508 1.00 19.54 ? 2 UMS A N1 1 HETATM 34 C C2 . UMS A 1 2 ? 35.003 21.579 -0.638 1.00 20.14 ? 2 UMS A C2 1 HETATM 35 O O2 . UMS A 1 2 ? 36.078 21.524 -0.069 1.00 20.95 ? 2 UMS A O2 1 HETATM 36 N N3 . UMS A 1 2 ? 34.659 22.629 -1.454 1.00 20.75 ? 2 UMS A N3 1 HETATM 37 C C4 . UMS A 1 2 ? 33.474 22.792 -2.142 1.00 19.01 ? 2 UMS A C4 1 HETATM 38 O O4 . UMS A 1 2 ? 33.302 23.810 -2.818 1.00 19.61 ? 2 UMS A O4 1 HETATM 39 C C5 . UMS A 1 2 ? 32.531 21.727 -1.966 1.00 19.67 ? 2 UMS A C5 1 HETATM 40 C C6 . UMS A 1 2 ? 32.841 20.691 -1.175 1.00 20.41 ? 2 UMS A C6 1 ATOM 41 P P . DG A 1 3 ? 31.412 20.216 4.143 1.00 27.54 ? 3 DG A P 1 ATOM 42 O OP1 . DG A 1 3 ? 31.063 19.617 5.452 1.00 26.52 ? 3 DG A OP1 1 ATOM 43 O OP2 . DG A 1 3 ? 30.334 20.735 3.263 1.00 27.44 ? 3 DG A OP2 1 ATOM 44 O "O5'" . DG A 1 3 ? 32.464 21.392 4.382 1.00 26.19 ? 3 DG A "O5'" 1 ATOM 45 C "C5'" . DG A 1 3 ? 33.608 21.190 5.207 1.00 26.62 ? 3 DG A "C5'" 1 ATOM 46 C "C4'" . DG A 1 3 ? 34.624 22.290 4.995 1.00 23.84 ? 3 DG A "C4'" 1 ATOM 47 O "O4'" . DG A 1 3 ? 35.009 22.355 3.603 1.00 23.38 ? 3 DG A "O4'" 1 ATOM 48 C "C3'" . DG A 1 3 ? 34.187 23.714 5.313 1.00 23.04 ? 3 DG A "C3'" 1 ATOM 49 O "O3'" . DG A 1 3 ? 34.261 23.986 6.717 1.00 24.60 ? 3 DG A "O3'" 1 ATOM 50 C "C2'" . DG A 1 3 ? 35.234 24.515 4.566 1.00 21.54 ? 3 DG A "C2'" 1 ATOM 51 C "C1'" . DG A 1 3 ? 35.442 23.684 3.303 1.00 22.07 ? 3 DG A "C1'" 1 ATOM 52 N N9 . DG A 1 3 ? 34.658 24.186 2.180 1.00 20.15 ? 3 DG A N9 1 ATOM 53 C C8 . DG A 1 3 ? 33.462 23.708 1.700 1.00 19.85 ? 3 DG A C8 1 ATOM 54 N N7 . DG A 1 3 ? 33.001 24.403 0.695 1.00 18.49 ? 3 DG A N7 1 ATOM 55 C C5 . DG A 1 3 ? 33.954 25.395 0.499 1.00 18.36 ? 3 DG A C5 1 ATOM 56 C C6 . DG A 1 3 ? 34.002 26.458 -0.443 1.00 16.61 ? 3 DG A C6 1 ATOM 57 O O6 . DG A 1 3 ? 33.187 26.742 -1.329 1.00 17.42 ? 3 DG A O6 1 ATOM 58 N N1 . DG A 1 3 ? 35.148 27.233 -0.282 1.00 17.45 ? 3 DG A N1 1 ATOM 59 C C2 . DG A 1 3 ? 36.125 27.013 0.656 1.00 17.46 ? 3 DG A C2 1 ATOM 60 N N2 . DG A 1 3 ? 37.159 27.863 0.647 1.00 18.07 ? 3 DG A N2 1 ATOM 61 N N3 . DG A 1 3 ? 36.091 26.030 1.537 1.00 19.37 ? 3 DG A N3 1 ATOM 62 C C4 . DG A 1 3 ? 34.985 25.268 1.403 1.00 18.57 ? 3 DG A C4 1 HETATM 63 N N1 . TTI A 1 4 ? 35.179 28.961 3.592 1.00 17.30 ? 4 TTI A N1 1 HETATM 64 C C2 . TTI A 1 4 ? 35.071 29.894 2.585 1.00 16.63 ? 4 TTI A C2 1 HETATM 65 O O2 . TTI A 1 4 ? 35.907 30.762 2.381 1.00 17.03 ? 4 TTI A O2 1 HETATM 66 N N3 . TTI A 1 4 ? 33.935 29.781 1.824 1.00 16.72 ? 4 TTI A N3 1 HETATM 67 C C4 . TTI A 1 4 ? 32.920 28.855 1.966 1.00 18.05 ? 4 TTI A C4 1 HETATM 68 O O4 . TTI A 1 4 ? 31.953 28.885 1.203 1.00 18.28 ? 4 TTI A O4 1 HETATM 69 C C5 . TTI A 1 4 ? 33.096 27.910 3.045 1.00 17.33 ? 4 TTI A C5 1 HETATM 70 C C6 . TTI A 1 4 ? 34.203 28.007 3.794 1.00 18.00 ? 4 TTI A C6 1 HETATM 71 C "C1'" . TTI A 1 4 ? 36.376 29.000 4.448 1.00 18.79 ? 4 TTI A "C1'" 1 HETATM 72 C "C2'" . TTI A 1 4 ? 36.287 29.993 5.608 1.00 20.02 ? 4 TTI A "C2'" 1 HETATM 73 C "C3'" . TTI A 1 4 ? 35.861 29.117 6.770 1.00 21.59 ? 4 TTI A "C3'" 1 HETATM 74 O "O3'" . TTI A 1 4 ? 36.317 29.643 8.019 1.00 22.18 ? 4 TTI A "O3'" 1 HETATM 75 C "C4'" . TTI A 1 4 ? 36.570 27.807 6.461 1.00 21.01 ? 4 TTI A "C4'" 1 HETATM 76 O "O4'" . TTI A 1 4 ? 36.538 27.705 5.021 1.00 20.77 ? 4 TTI A "O4'" 1 HETATM 77 C "C5'" . TTI A 1 4 ? 35.939 26.581 7.081 1.00 23.07 ? 4 TTI A "C5'" 1 HETATM 78 O "O5'" . TTI A 1 4 ? 34.555 26.504 6.731 1.00 23.93 ? 4 TTI A "O5'" 1 HETATM 79 P P . TTI A 1 4 ? 33.622 25.344 7.306 1.00 24.22 ? 4 TTI A P 1 HETATM 80 O O1P . TTI A 1 4 ? 32.272 25.512 6.712 1.00 24.51 ? 4 TTI A O1P 1 HETATM 81 O O2P . TTI A 1 4 ? 33.768 25.305 8.783 1.00 27.09 ? 4 TTI A O2P 1 HETATM 82 TE TE5 . TTI A 1 4 ? 31.594 26.423 3.371 0.35 25.64 ? 4 TTI A TE5 1 ATOM 83 P P . DA A 1 5 ? 35.547 30.886 8.684 1.00 23.30 ? 5 DA A P 1 ATOM 84 O OP1 . DA A 1 5 ? 36.125 31.088 10.033 1.00 25.99 ? 5 DA A OP1 1 ATOM 85 O OP2 . DA A 1 5 ? 34.081 30.691 8.533 1.00 25.59 ? 5 DA A OP2 1 ATOM 86 O "O5'" . DA A 1 5 ? 35.977 32.126 7.783 1.00 21.02 ? 5 DA A "O5'" 1 ATOM 87 C "C5'" . DA A 1 5 ? 35.148 33.284 7.687 1.00 20.23 ? 5 DA A "C5'" 1 ATOM 88 C "C4'" . DA A 1 5 ? 35.544 34.113 6.486 1.00 19.00 ? 5 DA A "C4'" 1 ATOM 89 O "O4'" . DA A 1 5 ? 35.563 33.289 5.300 1.00 18.75 ? 5 DA A "O4'" 1 ATOM 90 C "C3'" . DA A 1 5 ? 34.581 35.247 6.158 1.00 20.24 ? 5 DA A "C3'" 1 ATOM 91 O "O3'" . DA A 1 5 ? 34.915 36.414 6.913 1.00 20.72 ? 5 DA A "O3'" 1 ATOM 92 C "C2'" . DA A 1 5 ? 34.820 35.452 4.675 1.00 18.83 ? 5 DA A "C2'" 1 ATOM 93 C "C1'" . DA A 1 5 ? 35.067 34.027 4.185 1.00 17.94 ? 5 DA A "C1'" 1 ATOM 94 N N9 . DA A 1 5 ? 33.867 33.342 3.701 1.00 15.31 ? 5 DA A N9 1 ATOM 95 C C8 . DA A 1 5 ? 33.216 32.286 4.287 1.00 17.49 ? 5 DA A C8 1 ATOM 96 N N7 . DA A 1 5 ? 32.168 31.873 3.618 1.00 15.34 ? 5 DA A N7 1 ATOM 97 C C5 . DA A 1 5 ? 32.125 32.713 2.515 1.00 15.61 ? 5 DA A C5 1 ATOM 98 C C6 . DA A 1 5 ? 31.247 32.791 1.423 1.00 14.46 ? 5 DA A C6 1 ATOM 99 N N6 . DA A 1 5 ? 30.206 31.972 1.251 1.00 15.91 ? 5 DA A N6 1 ATOM 100 N N1 . DA A 1 5 ? 31.479 33.751 0.500 1.00 14.38 ? 5 DA A N1 1 ATOM 101 C C2 . DA A 1 5 ? 32.529 34.566 0.674 1.00 14.32 ? 5 DA A C2 1 ATOM 102 N N3 . DA A 1 5 ? 33.425 34.588 1.657 1.00 16.13 ? 5 DA A N3 1 ATOM 103 C C4 . DA A 1 5 ? 33.165 33.626 2.556 1.00 15.77 ? 5 DA A C4 1 ATOM 104 P P . DC A 1 6 ? 33.748 37.393 7.424 1.00 21.56 ? 6 DC A P 1 ATOM 105 O OP1 . DC A 1 6 ? 34.372 38.450 8.259 1.00 23.79 ? 6 DC A OP1 1 ATOM 106 O OP2 . DC A 1 6 ? 32.656 36.557 7.986 1.00 21.22 ? 6 DC A OP2 1 ATOM 107 O "O5'" . DC A 1 6 ? 33.204 38.067 6.089 1.00 18.98 ? 6 DC A "O5'" 1 ATOM 108 C "C5'" . DC A 1 6 ? 34.042 38.918 5.312 1.00 20.29 ? 6 DC A "C5'" 1 ATOM 109 C "C4'" . DC A 1 6 ? 33.359 39.287 4.016 1.00 18.88 ? 6 DC A "C4'" 1 ATOM 110 O "O4'" . DC A 1 6 ? 33.204 38.121 3.176 1.00 19.02 ? 6 DC A "O4'" 1 ATOM 111 C "C3'" . DC A 1 6 ? 31.947 39.834 4.166 1.00 20.03 ? 6 DC A "C3'" 1 ATOM 112 O "O3'" . DC A 1 6 ? 31.969 41.229 4.476 1.00 22.08 ? 6 DC A "O3'" 1 ATOM 113 C "C2'" . DC A 1 6 ? 31.371 39.579 2.788 1.00 18.96 ? 6 DC A "C2'" 1 ATOM 114 C "C1'" . DC A 1 6 ? 32.003 38.238 2.415 1.00 16.96 ? 6 DC A "C1'" 1 ATOM 115 N N1 . DC A 1 6 ? 31.145 37.095 2.750 1.00 16.44 ? 6 DC A N1 1 ATOM 116 C C2 . DC A 1 6 ? 30.117 36.756 1.872 1.00 16.00 ? 6 DC A C2 1 ATOM 117 O O2 . DC A 1 6 ? 29.974 37.424 0.839 1.00 18.24 ? 6 DC A O2 1 ATOM 118 N N3 . DC A 1 6 ? 29.306 35.713 2.167 1.00 14.93 ? 6 DC A N3 1 ATOM 119 C C4 . DC A 1 6 ? 29.499 35.017 3.288 1.00 15.01 ? 6 DC A C4 1 ATOM 120 N N4 . DC A 1 6 ? 28.677 33.987 3.530 1.00 15.39 ? 6 DC A N4 1 ATOM 121 C C5 . DC A 1 6 ? 30.545 35.342 4.207 1.00 14.93 ? 6 DC A C5 1 ATOM 122 C C6 . DC A 1 6 ? 31.338 36.380 3.898 1.00 15.30 ? 6 DC A C6 1 ATOM 123 P P . DA A 1 7 ? 30.751 41.879 5.301 1.00 23.55 ? 7 DA A P 1 ATOM 124 O OP1 . DA A 1 7 ? 31.202 43.224 5.740 1.00 25.77 ? 7 DA A OP1 1 ATOM 125 O OP2 . DA A 1 7 ? 30.270 40.901 6.310 1.00 23.63 ? 7 DA A OP2 1 ATOM 126 O "O5'" . DA A 1 7 ? 29.600 42.064 4.216 1.00 21.91 ? 7 DA A "O5'" 1 ATOM 127 C "C5'" . DA A 1 7 ? 29.762 42.966 3.121 1.00 22.89 ? 7 DA A "C5'" 1 ATOM 128 C "C4'" . DA A 1 7 ? 28.606 42.831 2.157 1.00 21.14 ? 7 DA A "C4'" 1 ATOM 129 O "O4'" . DA A 1 7 ? 28.586 41.502 1.594 1.00 20.24 ? 7 DA A "O4'" 1 ATOM 130 C "C3'" . DA A 1 7 ? 27.228 43.018 2.780 1.00 21.64 ? 7 DA A "C3'" 1 ATOM 131 O "O3'" . DA A 1 7 ? 26.894 44.411 2.769 1.00 22.96 ? 7 DA A "O3'" 1 ATOM 132 C "C2'" . DA A 1 7 ? 26.336 42.223 1.843 1.00 19.53 ? 7 DA A "C2'" 1 ATOM 133 C "C1'" . DA A 1 7 ? 27.241 41.073 1.397 1.00 19.78 ? 7 DA A "C1'" 1 ATOM 134 N N9 . DA A 1 7 ? 27.060 39.826 2.137 1.00 16.86 ? 7 DA A N9 1 ATOM 135 C C8 . DA A 1 7 ? 27.775 39.377 3.220 1.00 17.00 ? 7 DA A C8 1 ATOM 136 N N7 . DA A 1 7 ? 27.394 38.201 3.655 1.00 17.34 ? 7 DA A N7 1 ATOM 137 C C5 . DA A 1 7 ? 26.351 37.855 2.806 1.00 16.85 ? 7 DA A C5 1 ATOM 138 C C6 . DA A 1 7 ? 25.524 36.720 2.737 1.00 16.10 ? 7 DA A C6 1 ATOM 139 N N6 . DA A 1 7 ? 25.627 35.678 3.563 1.00 16.15 ? 7 DA A N6 1 ATOM 140 N N1 . DA A 1 7 ? 24.577 36.690 1.774 1.00 17.35 ? 7 DA A N1 1 ATOM 141 C C2 . DA A 1 7 ? 24.481 37.730 0.939 1.00 17.22 ? 7 DA A C2 1 ATOM 142 N N3 . DA A 1 7 ? 25.202 38.849 0.899 1.00 16.47 ? 7 DA A N3 1 ATOM 143 C C4 . DA A 1 7 ? 26.131 38.849 1.871 1.00 16.46 ? 7 DA A C4 1 ATOM 144 P P . DC A 1 8 ? 26.018 45.037 3.962 1.00 24.30 ? 8 DC A P 1 ATOM 145 O OP1 . DC A 1 8 ? 26.023 46.514 3.798 1.00 25.64 ? 8 DC A OP1 1 ATOM 146 O OP2 . DC A 1 8 ? 26.484 44.440 5.238 1.00 27.06 ? 8 DC A OP2 1 ATOM 147 O "O5'" . DC A 1 8 ? 24.543 44.512 3.672 1.00 23.62 ? 8 DC A "O5'" 1 ATOM 148 C "C5'" . DC A 1 8 ? 23.850 44.923 2.494 1.00 24.08 ? 8 DC A "C5'" 1 ATOM 149 C "C4'" . DC A 1 8 ? 22.619 44.073 2.279 1.00 25.95 ? 8 DC A "C4'" 1 ATOM 150 O "O4'" . DC A 1 8 ? 22.998 42.702 2.047 1.00 25.18 ? 8 DC A "O4'" 1 ATOM 151 C "C3'" . DC A 1 8 ? 21.668 44.003 3.464 1.00 27.36 ? 8 DC A "C3'" 1 ATOM 152 O "O3'" . DC A 1 8 ? 20.869 45.185 3.549 1.00 29.49 ? 8 DC A "O3'" 1 ATOM 153 C "C2'" . DC A 1 8 ? 20.911 42.715 3.197 1.00 27.60 ? 8 DC A "C2'" 1 ATOM 154 C "C1'" . DC A 1 8 ? 21.965 41.836 2.521 1.00 25.26 ? 8 DC A "C1'" 1 ATOM 155 N N1 . DC A 1 8 ? 22.584 40.825 3.391 1.00 22.19 ? 8 DC A N1 1 ATOM 156 C C2 . DC A 1 8 ? 22.024 39.546 3.431 1.00 21.23 ? 8 DC A C2 1 ATOM 157 O O2 . DC A 1 8 ? 21.009 39.322 2.763 1.00 22.51 ? 8 DC A O2 1 ATOM 158 N N3 . DC A 1 8 ? 22.601 38.592 4.199 1.00 21.30 ? 8 DC A N3 1 ATOM 159 C C4 . DC A 1 8 ? 23.687 38.884 4.918 1.00 19.77 ? 8 DC A C4 1 ATOM 160 N N4 . DC A 1 8 ? 24.229 37.910 5.653 1.00 21.20 ? 8 DC A N4 1 ATOM 161 C C5 . DC A 1 8 ? 24.267 40.189 4.912 1.00 20.39 ? 8 DC A C5 1 ATOM 162 C C6 . DC A 1 8 ? 23.688 41.119 4.140 1.00 20.54 ? 8 DC A C6 1 HETATM 163 O O . HOH B 2 . ? 28.957 32.226 5.753 1.00 31.60 ? 100 HOH A O 1 HETATM 164 O O . HOH B 2 . ? 25.920 16.520 -0.968 1.00 26.64 ? 101 HOH A O 1 HETATM 165 O O . HOH B 2 . ? 28.229 14.839 -7.424 1.00 17.10 ? 102 HOH A O 1 HETATM 166 O O . HOH B 2 . ? 19.883 40.185 5.792 1.00 26.25 ? 103 HOH A O 1 HETATM 167 O O . HOH B 2 . ? 18.307 42.495 1.440 1.00 38.47 ? 104 HOH A O 1 HETATM 168 O O . HOH B 2 . ? 27.931 36.724 5.945 1.00 30.95 ? 105 HOH A O 1 HETATM 169 O O . HOH B 2 . ? 25.700 42.605 6.920 1.00 29.61 ? 106 HOH A O 1 HETATM 170 O O . HOH B 2 . ? 26.393 38.241 7.478 1.00 26.25 ? 107 HOH A O 1 HETATM 171 O O . HOH B 2 . ? 31.419 23.033 -6.874 1.00 30.99 ? 108 HOH A O 1 HETATM 172 O O . HOH B 2 . ? 27.397 20.350 -3.448 1.00 34.47 ? 109 HOH A O 1 HETATM 173 O O . HOH B 2 . ? 31.213 25.902 -2.873 1.00 39.17 ? 110 HOH A O 1 HETATM 174 O O . HOH B 2 . ? 30.193 30.066 4.342 1.00 30.10 ? 111 HOH A O 1 HETATM 175 O O . HOH B 2 . ? 38.116 25.705 3.381 1.00 26.04 ? 112 HOH A O 1 HETATM 176 O O . HOH B 2 . ? 33.684 24.827 -6.147 1.00 34.10 ? 114 HOH A O 1 HETATM 177 O O . HOH B 2 . ? 27.475 40.667 7.172 1.00 38.50 ? 116 HOH A O 1 HETATM 178 O O . HOH B 2 . ? 30.370 24.254 -0.379 1.00 36.86 ? 117 HOH A O 1 HETATM 179 O O . HOH B 2 . ? 20.835 38.724 0.076 1.00 27.49 ? 118 HOH A O 1 HETATM 180 O O . HOH B 2 . ? 27.213 17.019 -8.716 1.00 23.22 ? 125 HOH A O 1 HETATM 181 O O . HOH B 2 . ? 28.338 19.526 -8.012 1.00 28.80 ? 126 HOH A O 1 HETATM 182 O O . HOH B 2 . ? 36.828 37.297 9.678 1.00 44.32 ? 127 HOH A O 1 HETATM 183 O O . HOH B 2 . ? 39.104 25.486 5.901 1.00 39.38 ? 128 HOH A O 1 HETATM 184 O O . HOH B 2 . ? 37.424 33.446 10.943 1.00 43.55 ? 129 HOH A O 1 HETATM 185 O O . HOH B 2 . ? 23.303 48.063 5.234 1.00 44.81 ? 130 HOH A O 1 HETATM 186 O O . HOH B 2 . ? 38.550 29.961 12.815 1.00 47.55 ? 131 HOH A O 1 HETATM 187 O O . HOH B 2 . ? 36.754 27.888 11.244 1.00 47.31 ? 132 HOH A O 1 HETATM 188 O O . HOH B 2 . ? 37.169 39.769 7.202 1.00 38.50 ? 133 HOH A O 1 HETATM 189 O O . HOH B 2 . ? 29.327 21.911 0.356 1.00 39.38 ? 134 HOH A O 1 HETATM 190 O O . HOH B 2 . ? 24.787 17.537 -7.312 1.00 41.33 ? 135 HOH A O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 UMS 2 2 2 UMS UMS A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 TTI 4 4 4 TTI TTI A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DC 8 8 8 DC C A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 100 100 HOH HOH A . B 2 HOH 2 101 101 HOH HOH A . B 2 HOH 3 102 102 HOH HOH A . B 2 HOH 4 103 103 HOH HOH A . B 2 HOH 5 104 104 HOH HOH A . B 2 HOH 6 105 105 HOH HOH A . B 2 HOH 7 106 106 HOH HOH A . B 2 HOH 8 107 107 HOH HOH A . B 2 HOH 9 108 108 HOH HOH A . B 2 HOH 10 109 109 HOH HOH A . B 2 HOH 11 110 110 HOH HOH A . B 2 HOH 12 111 111 HOH HOH A . B 2 HOH 13 112 112 HOH HOH A . B 2 HOH 14 114 114 HOH HOH A . B 2 HOH 15 116 116 HOH HOH A . B 2 HOH 16 117 117 HOH HOH A . B 2 HOH 17 118 118 HOH HOH A . B 2 HOH 18 125 125 HOH HOH A . B 2 HOH 19 126 126 HOH HOH A . B 2 HOH 20 127 127 HOH HOH A . B 2 HOH 21 128 128 HOH HOH A . B 2 HOH 22 129 129 HOH HOH A . B 2 HOH 23 130 130 HOH HOH A . B 2 HOH 24 131 131 HOH HOH A . B 2 HOH 25 132 132 HOH HOH A . B 2 HOH 26 133 133 HOH HOH A . B 2 HOH 27 134 134 HOH HOH A . B 2 HOH 28 135 135 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A UMS 2 A UMS 2 ? DU ? 2 A TTI 4 A TTI 4 ? DU ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-01-27 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal d*TREK 9.9BNLDz 'Mar 25 2008' package 'Jim W. Pflugrath' Jim.Pflugrath@Rigaku.com 'data processing' http://www.rigaku.com/software/dtrek.html ? ? 1 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns-online.org/ Fortran_77 ? 2 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 ADSC Quantum ? ? ? ? 'data collection' ? ? ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 d*TREK . ? ? ? ? 'data scaling' ? ? ? 6 CNS . ? ? ? ? phasing ? ? ? 7 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 HOH O O N N 108 HOH H1 H N N 109 HOH H2 H N N 110 TTI O3P O N N 111 TTI N1 N N N 112 TTI C2 C N N 113 TTI O2 O N N 114 TTI N3 N N N 115 TTI C4 C N N 116 TTI O4 O N N 117 TTI C5 C N N 118 TTI C6 C N N 119 TTI "C1'" C N R 120 TTI "C2'" C N N 121 TTI "C3'" C N S 122 TTI "O3'" O N N 123 TTI "C4'" C N R 124 TTI "O4'" O N N 125 TTI "C5'" C N N 126 TTI "O5'" O N N 127 TTI P P N N 128 TTI O1P O N N 129 TTI O2P O N N 130 TTI TE5 TE N N 131 TTI HO3P H N N 132 TTI HN3 H N N 133 TTI H6 H N N 134 TTI H6A H N N 135 TTI "H1'" H N N 136 TTI "H2'" H N N 137 TTI "H2'A" H N N 138 TTI "H3'" H N N 139 TTI "HO3'" H N N 140 TTI "H4'" H N N 141 TTI "H5'" H N N 142 TTI "H5'A" H N N 143 TTI HO2P H N N 144 UMS OP3 O N N 145 UMS P P N N 146 UMS OP1 O N N 147 UMS OP2 O N N 148 UMS "O5'" O N N 149 UMS "C5'" C N N 150 UMS "C4'" C N R 151 UMS "O4'" O N N 152 UMS "C3'" C N R 153 UMS "O3'" O N N 154 UMS "C2'" C N R 155 UMS "SE2'" SE N N 156 UMS "C1'" C N R 157 UMS "CA'" C N N 158 UMS N1 N N N 159 UMS C2 C N N 160 UMS O2 O N N 161 UMS N3 N N N 162 UMS C4 C N N 163 UMS O4 O N N 164 UMS C5 C N N 165 UMS C6 C N N 166 UMS HOP3 H N N 167 UMS HOP2 H N N 168 UMS "H5'" H N N 169 UMS "H5'2" H N N 170 UMS "H4'" H N N 171 UMS "H3'" H N N 172 UMS "HO3'" H N N 173 UMS "H2'" H N N 174 UMS "H1'" H N N 175 UMS "HA'" H N N 176 UMS "HA'2" H N N 177 UMS "HA'3" H N N 178 UMS H3 H N N 179 UMS H5 H N N 180 UMS H6 H N N 181 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 HOH O H1 sing N N 113 HOH O H2 sing N N 114 TTI O3P P sing N N 115 TTI O3P HO3P sing N N 116 TTI C2 N1 sing N N 117 TTI N1 C6 sing N N 118 TTI N1 "C1'" sing N N 119 TTI N3 C2 sing N N 120 TTI O2 C2 doub N N 121 TTI N3 C4 sing N N 122 TTI N3 HN3 sing N N 123 TTI O4 C4 doub N N 124 TTI C4 C5 sing N N 125 TTI C5 TE5 doub N N 126 TTI C5 C6 sing N N 127 TTI C6 H6 sing N N 128 TTI C6 H6A sing N N 129 TTI "C1'" "O4'" sing N N 130 TTI "C1'" "C2'" sing N N 131 TTI "C1'" "H1'" sing N N 132 TTI "C2'" "C3'" sing N N 133 TTI "C2'" "H2'" sing N N 134 TTI "C2'" "H2'A" sing N N 135 TTI "C4'" "C3'" sing N N 136 TTI "C3'" "O3'" sing N N 137 TTI "C3'" "H3'" sing N N 138 TTI "O3'" "HO3'" sing N N 139 TTI "O4'" "C4'" sing N N 140 TTI "C4'" "C5'" sing N N 141 TTI "C4'" "H4'" sing N N 142 TTI "O5'" "C5'" sing N N 143 TTI "C5'" "H5'" sing N N 144 TTI "C5'" "H5'A" sing N N 145 TTI "O5'" P sing N N 146 TTI O1P P doub N N 147 TTI P O2P sing N N 148 TTI O2P HO2P sing N N 149 UMS OP3 P sing N N 150 UMS OP3 HOP3 sing N N 151 UMS P OP1 doub N N 152 UMS P OP2 sing N N 153 UMS P "O5'" sing N N 154 UMS OP2 HOP2 sing N N 155 UMS "O5'" "C5'" sing N N 156 UMS "C5'" "C4'" sing N N 157 UMS "C5'" "H5'" sing N N 158 UMS "C5'" "H5'2" sing N N 159 UMS "C4'" "O4'" sing N N 160 UMS "C4'" "C3'" sing N N 161 UMS "C4'" "H4'" sing N N 162 UMS "O4'" "C1'" sing N N 163 UMS "C3'" "O3'" sing N N 164 UMS "C3'" "C2'" sing N N 165 UMS "C3'" "H3'" sing N N 166 UMS "O3'" "HO3'" sing N N 167 UMS "C2'" "SE2'" sing N N 168 UMS "C2'" "C1'" sing N N 169 UMS "C2'" "H2'" sing N N 170 UMS "SE2'" "CA'" sing N N 171 UMS "C1'" N1 sing N N 172 UMS "C1'" "H1'" sing N N 173 UMS "CA'" "HA'" sing N N 174 UMS "CA'" "HA'2" sing N N 175 UMS "CA'" "HA'3" sing N N 176 UMS N1 C2 sing N N 177 UMS N1 C6 sing N N 178 UMS C2 O2 doub N N 179 UMS C2 N3 sing N N 180 UMS N3 C4 sing N N 181 UMS N3 H3 sing N N 182 UMS C4 O4 doub N N 183 UMS C4 C5 sing N N 184 UMS C5 C6 doub N N 185 UMS C5 H5 sing N N 186 UMS C6 H6 sing N N 187 # _ndb_struct_conf_na.entry_id 3FA1 _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 8 7_555 -0.490 -0.144 0.089 -9.556 -13.609 1.936 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1 1 A UMS 2 1_555 A DA 7 7_555 -0.015 -0.074 0.193 -7.008 -11.784 3.614 2 A_UMS2:DA7_A A 2 ? A 7 ? 20 1 1 A DG 3 1_555 A DC 6 7_555 -0.185 -0.121 0.169 -3.685 -10.939 3.989 3 A_DG3:DC6_A A 3 ? A 6 ? 19 1 1 A TTI 4 1_555 A DA 5 7_555 -0.077 -0.122 0.361 -5.703 -9.854 -5.837 4 A_TTI4:DA5_A A 4 ? A 5 ? 20 1 1 A DA 5 1_555 A TTI 4 7_555 0.077 -0.122 0.361 5.703 -9.854 -5.837 5 A_DA5:TTI4_A A 5 ? A 4 ? 20 1 1 A DC 6 1_555 A DG 3 7_555 0.185 -0.121 0.169 3.685 -10.939 3.989 6 A_DC6:DG3_A A 6 ? A 3 ? 19 1 1 A DA 7 1_555 A UMS 2 7_555 0.015 -0.074 0.193 7.008 -11.784 3.614 7 A_DA7:UMS2_A A 7 ? A 2 ? 20 1 1 A DC 8 1_555 A DG 1 7_555 0.490 -0.144 0.089 9.556 -13.609 1.936 8 A_DC8:DG1_A A 8 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 8 7_555 A UMS 2 1_555 A DA 7 7_555 0.227 -1.058 3.323 -0.961 10.591 33.772 -3.256 -0.512 2.864 17.694 1.606 35.360 1 AA_DG1UMS2:DA7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ? 1 A UMS 2 1_555 A DA 7 7_555 A DG 3 1_555 A DC 6 7_555 0.614 -1.434 3.054 1.046 11.385 29.753 -4.403 -0.955 2.378 21.213 -1.950 31.827 2 AA_UMS2DG3:DC6DA7_AA A 2 ? A 7 ? A 3 ? A 6 ? 1 A DG 3 1_555 A DC 6 7_555 A TTI 4 1_555 A DA 5 7_555 -0.508 -1.646 3.381 -0.462 0.296 35.301 -2.759 0.766 3.374 0.488 0.761 35.305 3 AA_DG3TTI4:DA5DC6_AA A 3 ? A 6 ? A 4 ? A 5 ? 1 A TTI 4 1_555 A DA 5 7_555 A DA 5 1_555 A TTI 4 7_555 0.000 -1.691 2.857 0.000 3.428 28.740 -4.024 0.000 2.642 6.875 0.000 28.940 4 AA_TTI4DA5:TTI4DA5_AA A 4 ? A 5 ? A 5 ? A 4 ? 1 A DA 5 1_555 A TTI 4 7_555 A DC 6 1_555 A DG 3 7_555 0.508 -1.646 3.381 0.462 0.296 35.301 -2.759 -0.766 3.374 0.488 -0.761 35.305 5 AA_DA5DC6:DG3TTI4_AA A 5 ? A 4 ? A 6 ? A 3 ? 1 A DC 6 1_555 A DG 3 7_555 A DA 7 1_555 A UMS 2 7_555 -0.614 -1.434 3.054 -1.046 11.385 29.753 -4.403 0.955 2.378 21.213 1.950 31.828 6 AA_DC6DA7:UMS2DG3_AA A 6 ? A 3 ? A 7 ? A 2 ? 1 A DA 7 1_555 A UMS 2 7_555 A DC 8 1_555 A DG 1 7_555 -0.227 -1.058 3.323 0.961 10.591 33.772 -3.256 0.512 2.864 17.694 -1.606 35.360 7 AA_DA7DC8:DG1UMS2_AA A 7 ? A 2 ? A 8 ? A 1 ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1DNS _pdbx_initial_refinement_model.details ? #